Regenerative agricultural practices, i.e. organic and natural farming, are rooted in India since ancient times. However, the high cost of production, lack of organic pest control measures and premium price of organic produces in chemical agriculture encourage natural farming. In the present study, the quality improvement of calcareous soils under organic (OGF) and natural (NTF) management was compared with integrated conventional (ICF) and non-invasive (NIF) farming practices with cotton-sorghum crops over three consecutive years. A total of 23 soil attributes were analyzed at the end of the third cropping cycle and subjected to principal component analysis (PCA) to select a minimum data set (MDS) and obtain a soil quality index (SQI). The attributes soil organic carbon (SOC), available Fe, pH, bulk density (BD) and alkaline phosphatase (APA) were selected as indicators based on correlations and expert opinions on the lime content of the experimental soil. The SQI was improved in the order of OGF (0.89) > NTF(0.69) > ICF(0.48) > NIF(0.05). The contribution of the indicators to SQI was in the order of available Fe (17-44%) > SOC (21-28%), APA (11-36%) > pH (0-22%), and BD (0-20%) regardless of the farming practices. These indicators contribute equally to soil quality under natural (17-22%) and organic (18-22%) farming. The benefit:cost ratio was calculated to show the advantage of natural farming and was in the order of NTF(1.95-2.29), ICF (1.34-1.47), OGF (1.13-1.20) and NIF (0.84-1.47). In overall, the natural farming significantly sustained the soil quality and cost benefit compared to integrated conventional farming practices.