Diabetic Nephropathy (DN) is a microvascular complication in patients with both type I and II diabetes with poorly glycemic control. It can ultimately lead to end-stage renal disease, accounting for 40% of patients requiring renal replacement therapy. DN is a chronic disease characterized by glomerular hypertrophy, proteinuria, decreased glomerular filtration, and renal fibrosis with loss of renal function caused by high glucose condition. The morphological and the ultrastructural changes in DN include progressive thickening of the glomerular basement membrane, expansion of the mesangial matrix, glomerular hyperfiltration, and tubulointerstitial fibrosis. DN can quickly progress to end-stage kidney disease without treatment because of no clinical symptoms in early stage. Hence, understanding the mechanism of the development of DN is extremely important for better treatment. Epigenetic dysregulation plays a critical role in the initiation and progression of DN, and post-transcriptional modifcations, such as RNA methylation, have attracted the attention of many researchers. There has been identified more than 170 RNA modifications in RNA. N6-methyladenosine (m6A) is the most abundant and widely distributed RNA modification of most eukaryotes. In addition, METTL3, METTL14, WTAP has been identified as a methyltransferase, while FTO and ALKBH5 have been identified as demethyltransferas. Recently m6A modification has been identified and emerging as an important role in RNA expression, RNA variable splicing, transport, stability and translation, mRNA stability and then influence the development of various diseases especially in cancers. However, the quantity, distribution, and functions of m6A in DN are still unclear. We performed human m6A mRNA & lncRNA Epitranscriptomic Microarray and in-depth bioinformatics analysis of m6A in mRNA and lncRNAs in human healthy kidney and DN puncture tissues. LC-MS Based mRNA modification detection were used to confirm the m6A methylation level. Data mining from the nephroseq database of WTAP level in DN tubulointerstitium and its relationship with kidney function. The results showed marked differences in the amount and distribution of m6A between these two type tissues. The number of m6A methylation genes in DN was much more than that in healthy tissues. Bioinformatics analysis showed that the two groups, with diferent methylation. Heatmap showing the m6A hypermethylation tendency in DN for 30 representative genes involved in 6 canonical DN-related pathways (PI3K–AKT, RAS,VEGF, Chemoking, Isuline and Renin-angiotensin system)(Figure 1). Agilent 6460 QQQ mass spectrometer with an Agilent 1260 HPLC system using Multi reaction monitored 20 types nucleotides with normalized peak area>1000. The ratio of m6A/A and 3’-Omel/I are significantly higher in DN patients than control(Figure 2). WTAP is highly expressed and associated with kidney function from the nephroseq database. Furthermore, there were also correlations of WTAP expression with serum creatinine and glomerular filtration (figure 3). Our findings suggest that m6A methylation in mRNA may be involved in the development of DN and that the methylase WTAP may be a major contributor.
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