The reconstruction of the human impacts on the morphodynamics of river deltas in the long term is challenging. The ternary diagram of Galloway (1975) used to classify morphodynamics of deltas does not include direct human influence which is now affecting most of the deltas of the world. The study of human-dominated deltas requires specific approaches and consideration of human processes and morphologies in interaction with more commonly studied natural processes and morphologies. This study demonstrates how to combine different datasets from natural and social sciences to reconstruct long term temporal trajectories of hybrid urban deltas. The Francolí delta, associated with the UNESCO city of Tarragona, offers a perfect case study to identify the different steps of a wave-dominated delta leading to a human-dominated delta over a long-term perspective. Tarragona emerged in the 1st millennium BCE and became a significant port city in the Roman period. This study identifies the evidence of a semi-protected harbour built 2000 years ago that initiates the evolution of a hybrid urban delta towards a human-dominated delta. Until the end 19th c. CE, cyclical changes at the river mouth are observed due to natural fluvial and coastal dynamics while progradation stages are partly affected by anthropogenic structures over time. The 19th c. CE is a major turning point. Morphodynamics controlled by anthropogenic factors strongly increase while fluvial and coastal sedimentation is partly erased by dredgings. The systematic approach proposed for the Francolí delta can be standardised and applied to other hybrid urban deltas allowing better comparison between urbanised deltas.