Homologous Exchanges Research Articles

Immunity to coccidiosis: T-cell control of infection with Eimeria vermiformis in mice does not require co-operation with inflammatory cells.

The necessity for co-operation between lymphocytes and myeloid-derived inflammatory cells in the mediation of anti-coccidial immunity was investigated using mice infected with Eimeria vermiformis. Reciprocal exchange of immune lymphocytes between H-2 compatible strains of contrasting susceptibility to infection (resistant BALB/B and susceptible C57BL/10) resulted in successful transfer of immunity in both homologous and heterologous exchanges. Recipients of immune cells, whatever their original response phenotype, expressed a high degree of immunity to infection, indicating that the differential susceptibility of the strains is a property of their lymphoid cells and is not attributable to their capacity to mount inflammatory responses. This conclusion was confirmed by the successful adoptive transfer of immunity into NIH mice previously exposed to 600 rad X-irradiation; at this level of irradiation inflammatory responsiveness is severely depressed. Additional confirmation that strain-response phenotype is lymphocyte dependent and that immune lymphocytes can mediate their effects against E. vermiformis without the intervention of inflammatory cells was obtained from studies on the mucosal mast cell response to infection. No correlation existed between the development of intestinal mastocytosis, an index of T-cell-mediated inflammatory responsiveness, and the expression of resistance to E. vermiformis in BALB/c (resistant), C57BL/10 (susceptible) and NIH (susceptible) mice.

Gene segregation in induced tetraploid rainbow trout: genetic evidence of preferential pairing of homologous chromosomes.

Gene segregation at six protein loci was analysed in progeny from tetraploid males and females obtained by suppression of first mitosis. The triploid full-sib families from five tetraploid males and the diploid gynogenetic lines from four tetraploid females were examined. The proportions of heterozygous gametes (0.83 on the average) were significantly higher than expected from tetrasomic inheritance (0.667) at all the loci studied. This was explained by preferential pairing of homologous chromosomes. The proportions of heterozygous gametes were significantly different between loci, but the variations were not correlated with the gene--centromere distances. Our results showed that, at least for one locus, the homozygous gametes mainly resulted from pairing of homologous chromosomes rather than from pairing of homologous chromosomes, quadrivalent formation, and chromatin exchanges between homologous chromosomes.

Gene conversion, unequal crossing-over and mispairing at a non-tandem duplication during meiosis of Saccharomyces cerevisiae.

We have developed a novel system to examine conversion, exchange and mispairing involving a non-tandem duplication of the ade8 locus in yeast by monitoring the segregation of heterozygous markers between the duplicated sequence. Plasmid Yrp17 carries the yeast selectable markers URA3+ and TRP1+. Yrp17 derivatives with a 4 kb insert carrying ade8-18 were used to clone the mutations trp1-1 and ura3-1 by gap repair. Integrants of the resulting plasmids at the Ade8 locus were crossed to yield diploid hybrids with a non-tandem duplication of Ade8 and heterozygosity for the plasmid markers between the duplicated sequences. 1192 complete, unselected asci were analyzed and 270 exhibiting recombination of the markers contributed by the plasmid were analyzed by Southern transfers to detect changes in plasmid sequences. Twenty-seven tetrads had unequal homologous exchanges and five had unequal sister-chromatid exchanges. Seven tetrads carry an additional copy of the integrated plasmid and ten are missing one. We propose that these two classes represent conversions of the entire 11 kb plasmid, which occur after misalignment and formation of an unpaired loop. Mispairing is a frequent event, and occurs in approximately fifty percent of all meioses. The system described provides a means to determine the meiotic rules of conversion, exchange and pairing for duplicated DNA sequences.

Topological requirements for homologous recombination among DNA molecules transfected into mammalian cells.

Cultured animal cells rearrange foreign DNA very efficiently by homologous recombination. The individual steps that constitute the mechanism(s) of homologous recombination in transfected DNA are as yet undefined. In this study, we examined the topological requirements by using the genome of simian virus 40 (SV40) as a probe. By assaying homologous recombination between defective SV40 genomes after transfection into CV1 monkey cells, we showed that linear molecules are preferred substrates for homologous exchanges, exchanges are distributed around the SV40 genome, and the frequency of exchange is not diminished significantly by the presence of short stretches of non-SV40 DNA at the ends. These observations are considered in relation to current models of homologous recombination in mammalian cells, and a new model is proposed. The function of somatic cell recombination is discussed.

Topological requirements for homologous recombination among DNA molecules transfected into mammalian cells.

Cultured animal cells rearrange foreign DNA very efficiently by homologous recombination. The individual steps that constitute the mechanism(s) of homologous recombination in transfected DNA are as yet undefined. In this study, we examined the topological requirements by using the genome of simian virus 40 (SV40) as a probe. By assaying homologous recombination between defective SV40 genomes after transfection into CV1 monkey cells, we showed that linear molecules are preferred substrates for homologous exchanges, exchanges are distributed around the SV40 genome, and the frequency of exchange is not diminished significantly by the presence of short stretches of non-SV40 DNA at the ends. These observations are considered in relation to current models of homologous recombination in mammalian cells, and a new model is proposed. The function of somatic cell recombination is discussed.

Cell-stage dependence of the formation of SCEs and chromosomal aberrations.

Sister chromatid exchanges (SCEs) and homologous chromatid exchanges (chromatid exchanges between homologous chromosomes at homologous sites) are similar, not only in the type of chromosomal alteration but also in their high yields in Bloom syndrome cells or in cells treated with mitomycin C (MMC). However, the similarity between SCEs and homologous exchanges seems superficial as evidenced by the present experiments. In human lymphocytes, when caffeine was added during the S phase under conditions of concurrent exposure to MMC, both SCEs and homologous exchanges increased. However, when caffeine was added during the G2 phase, the frequency of SCEs remained unaffected whereas the frequency of homologous and nonhomologous chromatid exchanges decreased and that of other types of chromatid aberrations increased. We conclude that the process of formation of SCEs is, at least partly, different from that of chromatid exchanges or other types of chromatid aberrations, the former presumably occurring during the S phase and the latter during the G2 phase.

Homologous recombination in mammalian cells mediates formation of a functional gene from two overlapping gene fragments.

Chinese hamster cells with a lesion in the CAD gene (cell line Urd-A) require exogenous uridine to survive. Uridine prototrophs could be isolated after introducing two recombinant plasmids containing overlapping fragments of a cloned Syrian hamster CAD gene. In contrast, no uridine prototrophs were obtained after introducing a plasmid containing only one of the two overlapping fragments. DNA restriction analysis showed that the prototrophic transformants contain a functional CAD gene which was formed by a recombination event in the overlapping region of the two clones. Most of the recombination events involved homologous exchanges, and some of them apparently were reciprocal. In situ hybridization analysis revealed that the donated sequences were integrated at a single chromosomal site which was different in each transformant. These results demonstrate the existence of a recombination system(s) in mammalian cells that can catalyze homologous exchanges. Recombination between donated sequences is a means by which this system can be characterized and also utilized for the production of novel gene fusions.

Specificity of Chromosomal Changes Induced with X Rays in a Human T-Cell Line

A human T-cell line (CCRF-HSB2) was exposed in vitro to various doses of X rays (50, 100, and 200 rad) and analyzed at the first mitotic division for structural chromosome aberrations. When chromosome and chromatid deletions and chromosome exchanges were analyzed with respect to sites of breakage and reunion, nonrandomness was observed, both between and within chromosomes. A marked concentration of deletions and exchanges occurred in chromosome groups F, D, and B. One of the characteristics was the occurrence of homologous chromatid exchanges in groups F, D, and C. The distribution of breaks was also analyzed in chromosome preparations stained for G- and Q-bands. All the breaks were located at lightly stained chromosome segments, with clusters of breaks at some sites. A significant concentration of break-points in deletions and chromatid exchanges was seen at certain chromosomal sites, i.e., 1q11, 2p11, 2q11, 4p11, 4q12, 4q31, 5q13, 6q21, 7q11, 7q22, 11p13, 12p11, 14q13, and 20q11. The results suggest a s...

Sister chromatid exchanges (S.C.E) in normal and abnormal bovine (Bos taurus L.) karyotypes.

Sister chromatid exchanges are studied in 17 normal animals and one carrier of 1/29 centric fusion. A mean of 12.2 exchanges per cell is found on the total animals studied. An analysis of variance done on 11 normal subjects to compare their mean number of exchanges per cell shows a significant individual difference at the 0.5% threshold. Homologous chromosome exchanges are very rare with the exception of one animal which had 4 on 8 cells studied and a quadriradial formation. The fused chromosome presents a variable number of exchanges comparable to those of free homologues.

Mitotic chiasmata in human diplochromosomes.

Three placental tissue cultures of spontaneous human abortions showed an unusually high frequency of metaphases with diplochromosomes. In 62 such cells, nine configurations were interpreted as mitotic chiasmata between the two sister chromosomes of a diplochromosome. One U-type exchange between two sister chromosomes was also found. This differs significantly from the 1 : 1 ratio of adjacent and alternate exchanges in translocations, thus supporting the idea that mitotic chiasmata are in principle different from chromatid translocations. The hypothesis is put forward that the frequency of homologous exchanges is determined by the intimacy of pairing which ranges from meiotic pairing through sister chromatid association, through sister chromosome association in diplochromosomes to accidental pairing of homologous regions in diploid cells.

Study of mitomycin C-induced chromosomal exchange.

Mitomycin C-induced sister chromatic exchange and quadriradial formation were studied in chromosomes from Muntiacus muntjac fibroblasts and A9, a transformed mouse cell line. We present the first direct cytological evidence for the induction of true somatic recombination involving homologous chromosomes. Analysis of the quadriradials from Muntjac cells indicates a non-random distribution with respect to the chromosomes involved and with respect to the points of conjunction. Sister chromatid exchange and quadriradial formation may reflect the outcome of repair processes involving a high frequency of homologous exchanges in the interphase nucleus.

Investigations on radiosenitive and radioresistant populations of Drosophila melanogaster V. Relations beteeen the relative radioresistance and some recombination properties in the irradiated population röi

Experiments were conducted to inquire whether the radioressitance observed in an irradiated laboratory population (RÖI) of Drosophila melanogaster might be associated in some way with recombinational processes. Simultaneously, data were collected on the stage distribution of radioresistance in RÖI by studying the induction of dominant lethals and X-chromosome losses in mature females at various exposure levels of X-irradiation (in eggs sampled from subsequent 12-h broods). The data show that (1) the radiation response of both populations (RÖI and its control + K) is equal in the highly sensitive mature stages, (2) RÖI is resistant relative to +K in the medium-sensitive stage-7 and younger oocytes collected on days 1.0 to 5.5 after exposure, and (3) the difference between the populations disappears again when the sensitivity steeply decreases on days 5.5 to 6.5. Similar brood-pattern experiments indicate that exchanges between homologous chromosomes are induced (by temperature shock or X-irradiation) in eggs sampled after day 5.5. Thus it is evident that the relative radioresistance in RÖI is due to mechanisms which operate in the developing oocyte in the stages of a medium radiosensitivity between that phase in which recombination is inducible and stage-14. The observed temporal sequence of recombination and relative radioresistance in RÖI supports the speculation that the latter might be associated with recombination repair. However, the natural recombination frequencies were equal in +K and RÖI. Likewise, no clear evidence was obtained on differences between the two populations with respect to X-ray-induced modifications of homologous exchanges in various para- and pericentric parts of the genome.

Investigations on radiosensitive and radioresistant populations of Drosophila melanogaster V. Relations between the relative radioresistance and some recombination properties in the irradiated population R�I

Experiments were conducted to inquire whether the radioressitance observed in an irradiated laboratory population (RÖI) of Drosophila melanogaster might be associated in some way with recombinational processes. Simultaneously, data were collected on the stage distribution of radioresistance in RÖI by studying the induction of dominant lethals and X-chromosome losses in mature females at various exposure levels of X-irradiation (in eggs sampled from subsequent 12-h broods). The data show that (1) the radiation response of both populations (RÖI and its control + K) is equal in the highly sensitive mature stages, (2) RÖI is resistant relative to +K in the medium-sensitive stage-7 and younger oocytes collected on days 1.0 to 5.5 after exposure, and (3) the difference between the populations disappears again when the sensitivity steeply decreases on days 5.5 to 6.5. Similar brood-pattern experiments indicate that exchanges between homologous chromosomes are induced (by temperature shock or X-irradiation) in eggs sampled after day 5.5. Thus it is evident that the relative radioresistance in RÖI is due to mechanisms which operate in the developing oocyte in the stages of a medium radiosensitivity between that phase in which recombination is inducible and stage-14. The observed temporal sequence of recombination and relative radioresistance in RÖI supports the speculation that the latter might be associated with recombination repair. However, the natural recombination frequencies were equal in +K and RÖI. Likewise, no clear evidence was obtained on differences between the two populations with respect to X-ray-induced modifications of homologous exchanges in various para- and pericentric parts of the genome.

Distribution of Mitomycin C-induced damage in human chromosomes with special reference to regions of repetitive DNA

The distribution of gaps, breaks, exchanges and other effects induced by Mitomycin C on human chromosomes was analysed to examine the possibility of a correlation between chromosome lesions and regions of repetitive DNA. Homologous and non-homologous exchanges between chromosomes Nos. 1, 9 and 16, and also between and with the acrocentric chromosomes were more frequent than expected, but breaks and gaps appeared to be located randomly with regard to chromosome light and dark bands.

Deletions in Immunoglobulin Polypeptide Chains as Evidence for Breakage and Repair in DNA

The partial sequence of the light chain of the myeloma-like immunoglobulin Sac shows a large deletion in its variable region. The sequence provides evidence that the corresponding gene was formed by the repair of DNA broken at nonhomologous positions. Data from other immunoglobulin (heavy) chains containing large deletions are compatible with their genes also being the result of DNA breakage and nonhomologous repair. Single homologous reciprocal exchanges in DNA networks at immunoglobulin loci could be the cause of the nonhomologous breaks. The relevance of these events to the generation of normal antibody variability remains to be determined.

Differential response of constitutive and facultative heterochromatin in the manifestation of mitomycin induced chromosome aberrations in Chinese hamster cells in vitro.

The distribution of chromatid aberrations induced by mitomycin C among the individual chromosomes of female and male Chinese hamster cells in vitro was studied. The aberrations were found to be non-randomly distributed. Among the autosomes, the chromosomes possessing constitutive heterochromatin were more often involved in aberrations as well as in homologous exchanges. The inactivated X chromosomes in the female cells offer a situation where the short arm is facultatively heterochromatic and the long arm constitutively heterochromatic, thus enabling an analysis of their response for aberration formation. The short arm was seldom found to be involved in the aberration. The long arm of the inactivated X was more often affected (5 to 10 times) than the long arm of the functional X though both are constitutively heterochromatic. The possible role of (a) structure of heterochromatin, (b) the chromocenter formation and their association, (c) allocycly, and (d) the qualitative differences in the DNA of different types of heterochromatin are discussed in relation to the formation of chromatid aberrations.