The production, by 3D printing, of optimized titanium meshes and biphasic calcium phosphate scaffolds for bone regeneration as well as the 3D printing of zirconia with high mechanical performances for dental restorations are between the most relevant challenges in digital dentistry. Our research group offers a complete set of advanced imaging and mechanical analysis to achieve these goals. We are currently using high-resolution X-ray tomography (microCT), electron microscopy and several material testing devices, all available at our laboratories, to test the following 3D-printed samples: (1) titanium meshes with different geometries; (2) zirconia blocks; (3) biphasic calcium phosphate scaffolds. The titanium meshes and the biphasic calcium phosphate scaffolds are currently under analysis with the objective to detect, by microCT imaging, the microarchitecture and eventual 3D defects before and after mechanical tests simulating the masticatory process. Moreover, the mechanical performance of 3D-printed versus milled zirconia blocks was also observed, before and after the application of compressive load, with the aim to investigate the microstructural characteristics of samples printed by Lithography-based Ceramic Manufacturing (LCM). Further, 60% of the 3D-printed samples were observed to have a mechanical behavior overlapping with the milled samples. The early fracture of the remaining 3D-printed samples could be due, as shown by electron microscopy, to the presence of pores of large dimensions and regular shape in the bulk. We are realizing an innovative working flow-chart for a reliable and complete characterization of these innovative 3D-printed biomaterials.