Two-dimensional materials, like graphene, are expected to make highly efficient permeation membranes for separation and sensing applications; however, defects of a specific size and location must be added to the film to make them selectively permeable. Though techniques like TEM drilling give precise information on size and location, this method is not scalable for eventual commercial use. Plasma treatments are a scalable alternative, but there is less information on where the defect formation begins and how intrinsic defects affect pore formation. This work seeks to understand these effects by using Raman spectroscopy at the same location before and after plasma treatments to map how the intrinsic defects affect the formation of extrinsic defects to create nanopores. Defect density increases with increasing RF power, independent of the gas used during the plasma treatment, suggesting that the mechanism is due to ion bombardment. Coalesced and arrested graphene syntheses are used to study the relative trends of defect formation and map existing graphene grain boundary locations. The results show that regions starting with high densities of intrinsic defects, potentially due to strain, were found to degrade into nanocrystalline graphene first on the amorphization trajectory, even before grain boundaries.