A set of thermo-hydro-mechanical coupling control equations was established, and the healing process of the joints between Gaomiaozi bentonite (GMZ01) buffer material blocks and the influence of the joint parameters were numerically simulated. The calculations consider the effect of joints on solute migration, the permeability and thermal conductivity of the buffer material, and the evolution of the healing effect. The effects of the joint design parameters, including the type, number, width, splicing form, and average dry density of the joint, are investigated. Studies show that, under an external water head, the joints will become hydraulic priority channels due to their higher permeability, which will shorten the saturation time of the blocks. As the bentonite gradually saturates, the swelling force compresses the joint material. This action improves the overall uniformity of the buffer material and reduces the priority channel effect. Meanwhile, the final average permeability and diffusion coefficient of the buffer material are found to mainly depend on the average dry density of the buffer material. The higher the average dry density of the buffer material is, the lower the final average permeability and diffusion coefficient are, whereas the distribution of joints and the block splicing are less affected by the average dry density of the buffer material. The findings of this study can provide a reference for the design of bentonite buffer material blocks in the repository.