The article deals with the standard immunological model, which is based on the principles of random combination of molecules and cells and their random encounter with their complementary sites, which is accompanied by the formation of reversible complexes and/or a cascade of subsequent reactions. In its purity, such a model gives rise to various kinds of paradoxes that do not correspond to the reality of immune processes. As a rule, the development of immunology is expressed in the construction of more and more detailed links of immunologic events, but the addition of each new event to the chain of links should lead not to acceleration, but to slowing down of the final process within the combinatorial-complementary system. In this connection, the question of a new possible model of the immune system is raised, which is based on P.K. Anokhin’s theory of functional systems. As its further development the physical-information model (PhIM) of the immune system is proposed, which assumes two plans, informational and physical, of the immune system organization and their coordination on the basis of the ideas of organic potential and processes of conjugation. The information plan is represented as an abstract space of degrees of freedom of the system, analogous to phase space in physics. The current and final state of the system can be represented as points of the state space, the activity of the system with the transition from the current to the final state, as a trajectory in this space. The acceptor of the action result in the theory of functional systems of P.K. Anokhin is connected in this case with the image of the final state as the result of the system action. The construction of the trajectory of the system’s activity can be represented as the direction of reduction of the organic potential of the system, by analogy with that in the case of physical systems and their physical potentials. The organic potential reaches a minimum in the final state and expresses the need of the biosystem as a result of action.