Heusler alloys based on 4d-elements are relatively less explored though they are known to host interesting electronic/magnetic properties useful for future spintronics applications. Here, we report a comparative study of the structural and magnetic properties of FeRuVSi (FRVS) and FeRuVGe (FRVG) using experimental and theoretical tools. Magneto-transport measurements have also been carried out to probe the role of magnetism on their transport behaviour. Room temperature (T) X-ray diffraction data reveals cubic crystal structure (space group No. 216) with B2 type antisite disorder between Fe and Ru sites in both the alloys. They show ferromagnetic behaviour below the Curie temperature (TC) 84 K for FeRuVSi and 57 K for FeRuVGe respectively. The field dependence of magnetization at low-T shows saturating (nearly saturating) behaviour for FRVS (FRVG). Transport measurements show metallic behaviour with a sharp reduction in the resistivity near TC. Ab-initio calculations predict nearly half metallic behaviour with ∼ 87 % and ∼ 89 % spin polarization for FRVS and FRVG in their ordered states. The inclusion of antisite disorder changes the magnetic configuration, leading to a visible decrease in the magnetic moment and spin polarization. The calculated net moment and the transport properties agree fairly well with those observed experimentally. These results confirm the importance of disorder in determining the intrinsic properties of these alloys. Such combined studies help in the identification of more novel quantum materials suitable for future spintronic applications.