With the problem of nuclear leakage being concerned by more and more industries, the research of coastal ecological environment monitoring has become more and more important. Therefore, it is necessary to study the current unsystematic coastal ecological environment monitoring and protection system. Aiming at the accuracy of feature fusion and representation of single short environment information, this paper compares the classification effects of the three fusion methods on four classifiers: logistic regression, SVM, random forest, and naive Bayes, to verify the effectiveness of LDA and DS model fusion and determine the consistency vector representation method of short environment information data. This paper collects and analyzes the coastal data in recent years using multisource information fusion decision‐making. In this paper, DS (Dempster Shafer) evidence algorithm is used to collect the data of coastal salinization degree and air relative humidity, and then, the DS feature matching model is introduced to fuse the whole index system. The method in the article completes the standardized and standardized processing of monitoring data digital conversion, quality control, and data classification, forms interrelated four‐dimensional spatiotemporal data, and establishes a distributed, object‐oriented, Internet‐oriented dynamic management real‐time and delayed database. Finally, this paper carries out tree decision processing on the coastal ecological environment monitoring data of multisource information fusion, to achieve the extraction and intuitive analysis of special data, and puts forward targeted protection strategies for the coastal ecological environment according to the data results of the DS algorithm. The research shows that the number of indicators in multisource information fusion in this paper is 16, a total of 3251 data, 2866 meaningful information, and 1869 data including ecological cycle. These data are the results of the collection of multi‐information data. Based on the multilevel nature of the existing marine environment three‐dimensional monitoring system, the study established a comprehensive resource‐guaranteed framework and divided it into four levels according to the level of the marine monitoring system: country, sea area, locality, and data access point. In specific analysis, the guarantee resources involved in each level are introduced. On the basis of in‐depth analysis of the requirements of the marine environment three‐dimensional monitoring system operation guarantee and the guarantee resource structure, the marine environment three‐dimensional monitoring operation comprehensive guarantee system is described from the internal structure and the external connection. The DS algorithm extracts the status information resources of various marine environment three‐dimensional monitoring systems, through the interaction of various subsystems, realizes the operation and maintenance of the monitoring system, and provides various technical supports such as system evaluation and failure analysis. After multisource information fusion and decision‐making, it is obtained that the index equilibrium module in the DS algorithm in this paper is 0.52, the sensitivity is 0.68, and the independence is 0.42. Among them, the range of sensitivity is the largest. In the simulation results, the eco‐economic coefficient can be increased from 12% to 36%. Therefore, using the method of multisource information fusion for quantitative index analysis can provide data support for coastal ecological environment detection, to establish a more perfect protection system.