Photic Research Articles

The Seasonality of Eddy-Induced Chlorophyll-a Anomalies in the Kuroshio Extension System

The Kuroshio Extension (KE) System exhibits highly energetic mesoscale phenomena, but the impact of mesoscale eddies on marine ecosystems and biogeochemical cycling is not well understood. This study utilizes remote sensing and Argo floats to investigate how eddies modify surface and subsurface chlorophyll-a (Chl-a) concentrations. On average, cyclones (anticyclones) induce positive (negative) surface Chl-a anomalies, particularly in winter. This occurs because cyclones (anticyclones) lift (deepen) isopycnals and nitrate into (out of) the euphotic zone, stimulating (depressing) the growth of phytoplankton. Consequently, cyclones (anticyclones) result in greater (smaller) subsurface Chl-a maximum (SCM), depth-integrated Chl-a, and depth-integrated nitrate. The positive (negative) surface Chl-a anomalies induced by cyclones (anticyclones) are mainly located near (north of) the main axis of the KE. The second and third mode represent monopole Chl-a patterns within eddy centers corresponding to either positive or negative anomalies, depending on the sign of the principal component. Chl-a concentrations in cyclones (anticyclones) above the SCM layer are higher (lower) than the edge values, while those below are lower (higher), regardless of winter variations. The vertical distributions and displacements of Chl-a and SCM depth are associated with eddy pumping. In terms of frequency, negative (positive) Chl-a anomalies account for approximately 26% (18%) of the total cyclones (anticyclones) across all four seasons. The opposite phase suggests that nutrient supply resulting from stratification differences under convective mixing may contribute to negative (positive) Chl-a anomalies in cyclone (anticyclone) cores. Additionally, the opposite phase can also be attributed to eddy stirring, trapping high and low Chl-a, and/or eddy Ekman pumping. Based on OFES outputs, the seasonal variation of nitrate from winter to summer primarily depends on the effect of vertical mixing, indicating that convective mixing processes contribute to an increase (decrease) in nutrients during winter (summer) over the KE.

Mesozooplankton and oceanographic conditions in the North zone of Coiba National Park (Panamá, Central America)

Zooplankton plays a central role in marine trophic webs, where community indexes (diversity, abundance, and biomass) are affected by regional and local oceanographic conditions. The multinational conservation initiative, known as the Eastern Tropical Marine Corridor (CMAR) encompasses a network of Marine Protected Areas of unique and high biological diversity along the Eastern Tropical Pacific. Zooplankton studies in this area are scarce and recently conducted. In the northern zone of Coiba Island (Coiba National Park, Panamá) during the dry and rainy seasons (2019–2020), the composition, abundance, and biomass of mesozooplankton and its relationship with oceanographic variables (temperature, salinity and euphotic zone) were analyzed. In both seasons different oceanographic conditions were found with vertical heterogeneities of temperature (T) and salinity and seasonal significant differences in minimum of T and euphotic zone depth (EZ). Zooplankton abundance and total biomass showed positive associations, and maximum values during the dry season; in oblique trawls, total zooplankton biomass showed negative associations with T (−0,60) and positive with Secchi disk depth (0.67). These patterns suggest higher zooplankton productivity during dry season associated with oceanographic conditions in the North zone of Coiba Island. Organisms were classified to the lowest taxonomic level possible (Sub-family or Genus) and a total of 33 zooplankton taxa were identified. In the holoplankton the most important groups were Copepoda, Chaetognata, Appendicularia and Thaliacea, while in the meroplankton larvae of Crustacea, Echinodermatha and Mollusca were the most common groups. Zooplankton indexes (abundance, biomass and composition) were similar to those reported for other CMAR islands. Strategies recommended to strengthen biodiversity conservation in this MPA include more studies on taxonomy, trophic dynamics, and connectivity of planktonic communities as central link in marine trophic webs.

Geochemical and Hydrographic Evolution of the Late Devonian Appalachian Seaway: Linking Sedimentation, Redox, and Salinity Across Time and Space

AbstractContinental interiors were flooded by epeiric seas during many intervals of the geologic past. Few modern analogs exist for these environments, however, and basic variables such as redox, salinity, and restriction are difficult to reconstruct in deep time. Despite these challenges, constraining epeiric watermass properties is critical because much of our preserved and accessible sedimentary record was deposited in such settings. Here, we present a four‐dimensional reconstruction of watermass evolution in the Late Devonian Appalachian Seaway of North America. We use combined proxies for sediment supply, paleosalinity, paleoredox, and basin hydrography in six cores through the Upper Devonian Cleveland Shale deposited across a paleo‐depth transect. Cyclic, coupled changes in sedimentation, redox, and salinity are recorded in environments near the Catskill Delta. Additionally, a pronounced salinity gradient was present from low‐brackish conditions near the delta to fully marine conditions in the basin interior, with a lower‐salinity mixing zone recorded across the Cumberland Sill. We also identified two broad sequences—the lower and upper Cleveland Shale—each of which shows distinct watermass signatures. The lower Cleveland Shale records a redox gradient with euxinia only present along the Cumberland Sill, whereas the upper Cleveland Shale records intensification of euxinia (potentially in the photic zone) at all six sites, which may be coincident with the Hangenberg extinction event. Ultimately, this study identifies pronounced epeiric watermass gradients over short timescales (millennia) and distances (hundreds of km or less), highlighting the need for interpreting the geochemistry of epicontinental deposits in the context of basin hydrography and paleosalinity.

Metagenome-based analysis of carbon-fixing microorganisms and their carbon-fixing pathways in deep-sea sediments of the southwestern Indian Ocean.

Carbon fixation by chemoautotrophic microorganisms in the dark ocean makes a large contribution to oceanic primary production and the global carbon cycle. In contrast to the Calvin cycle-dominated carbon-fixing pathway in the marine euphotic zone, carbon-fixing pathways and their hosts in deep-sea areas are diverse. In this study, four deep-sea sediment samples close to hydrothermal vents in the southwestern Indian Ocean were collected and processed using metagenomic analysis to investigate carbon fixation potential. Functional annotations revealed that all six carbon-fixing pathways had genes to varied degrees present in the samples. The reductive tricarboxylic acid cycle and Calvin cycle genes occurred in all samples, in contrast to the Wood-Ljungdahl pathway, which previous studies found mainly in the hydrothermal area. The annotations also elucidated the chemoautotrophic microbial members associated with the six carbon-fixing pathways, and the majority of them containing key carbon fixation genes belonged to the phyla Pseudomonadota and Desulfobacterota. The binned metagenome-assembled genomes revealed that key genes for the Calvin cycle and the 3-hydroxypropionate/4-hydroxybutyrate cycle were also found in the order Rhodothermales and the family Hyphomicrobiaceae. By identifying the carbon metabolic pathways and microbial populations in the hydrothermal fields of the southwest Indian Ocean, our study sheds light on complex biogeochemical processes in deep-sea environments and lays the foundation for further in-depth investigations of carbon fixation processes in deep-sea ecosystems.

The Nature of Opal Burial in the Equatorial Atlantic During the Deglaciation

AbstractRelatively high opal concentrations are measured in equatorial Atlantic sediments from the most recent deglaciation. To shed light on their causes, seven cores were analyzed for their content of siliceous (diatom, silicoflagellates, radiolarians, phytoliths, and sponge spicules) and calcareous (coccolithophores) microfossils. An early deglacial signal is detected at the time of rising boreal summer insolation ca. 18 ka by the coccolithophores. The surface freshening is likely due to the rain belt associated with the intertropical convergence zone (ITCZ), implying its southward shift relatively to its present‐day average positioning. The diatom assemblages corresponding to the following increase in diatom abundances ca. 15.5 ka suggest the formation of a cold tongue of upwelled water associated with tropical instability waves propagating westward. Such conditions occur at present during boreal summer, when southerly trade winds are intensified, and the ITCZ shifts northward. The presence of the diatom Ethmodiscus rex (Wallich) Hendey and the coccolithophore Florisphera profunda indicates a deep thermocline and nutrient enrichment of the lower photic zone, revealing that Si‐rich southern sourced water (SSW) likely contributed to enhanced primary productivity during this time interval. The discrepancies between the maximum opal concentrations and siliceous marine microfossils records evidence the contribution of freshwater diatoms and phytoliths, indicative of other processes. The definition of the nature of the opal record suggests successive productivity conditions associated with specific atmospheric settings determining the latitudinal ITCZ positioning and the development of oceanic processes; and major oceanic circulation changes permitting the contribution of SSW to marine productivity at this latitude.

Stromatolite-like Structures Within Microbially Laminated Sandstones of the Paleoarchean Moodies Group, Barberton Greenstone Belt, South Africa.

We report abundant small calcareous mounds associated with fossilized kerogenous microbial mats in tidal-facies sandstones of the predominantly siliciclastic Moodies Group (ca. 3.22 Ga) of the Barberton Greenstone Belt (BGB), South Africa and Eswatini. Most of the bulbous, internally microlaminated mounds are several centimeters in diameter and formed at the sediment-water interface contemporaneously with sedimentation. They originally consisted of Fe-Mg-Mn carbonate, which is now largely silicified; subtle internal compositional laminations are composed of organic matter and sericite. Their presence for >6 km along strike, their restriction to the inferred photic zone, and the internal structure suggest that mineral precipitation was induced by photosynthetic microorganisms. Similar calcareous mounds in this unit also occur within and on top of fluid-escape conduits, suggesting that carbonate precipitation may either have occurred abiogenically or involved chemotrophic metabolism(s) utilizing the oxidation of organic matter, methane, or hydrogen, the latter possibly generated by serpentinization of underlying ultramafic rocks. Alternatively or additionally, carbonate may have precipitated abiotically where heated subsurface fluids, sourced by the intrusion of a major Moodies-age sill, reached the tidal flats. In summary, precipitation mechanisms may have been variable; the calcareous mounds may represent "hybrid carbonates" that may have originated from the small-scale overlap of bioinduced and abiotic processes in space and time. Significantly, the widespread occurrence of these stromatolite-like structures in a fully siliciclastic, high-energy tidal setting broadens search criteria in the search for life on Mars while their possible hybrid origin challenges our ability to unambiguously identify a biogenic component.

A Regional Algorithm for Calculating the Thickness of the Photic Zone from the Vertical Profile of the Beam Attenuation Coefficient with a Case Study of the Northwestern Weddell Sea

A Regional Algorithm for Calculating the Thickness of the Photic Zone from the Vertical Profile of the Beam Attenuation Coefficient with a Case Study of the Northwestern Weddell Sea

Litho- and biostratigraphy of the early Eocenelarger benthic foraminifera-dominated carbonates of the central Tethys domain, Zagros Foreland Basin, SW Iran

The Early Paleogene Tethyan domain saw the development of large platform carbonates rich in large benthic foraminifera (LBF), of which the Taleh Zang Formation in Lurestan Basin, SW Iran, represents an excellent example. The LBF assemblage is dominated by alveolinids, together with a variety of foraminiferal genera such as Nummulites, Rotalia, Sackesaria, Assilina, Operculina, and Glomalveolina. Smaller benthic foraminifera, calcareous algae, gastropods, echinoids, and bivalves constitute minor components of the carbonate. Biostratigraphy analysis of the LBF is conducted on two distinct sections of the Taleh Zang Fm. The sections referred to as TZ-1 and TZ-2 have respective thicknesses of 87 m and 132 m. This analysis has constrained the formation age to the early Ypresian within Shallow Benthic Zones (SBZs) 5–7. Facies analysis supports the major accumulation of these successions in a shallow water environment within the euphotic zone. We recognize 9 distinct facies and microfacies representing four main depositional environments including tidal flat, lagoon, bioclastic shoal, and shallow open marine. These environments are distributed along a low-angle homoclinal ramp and form the foundation of a stratigraphic interpretation characterized by intervals displaying shallowing and deepening trends. Three shallowing-upward intervals have been identified within the Taleh Zang succession. The determined intervals cannot be solely attributed to global sea level fluctuations and support a significant impact of the regional structural context resulting from collision-induced uplift and variable subsidence rates. The identified intervals exhibit local and regional correlation and compatibility on the Arabian Plate, providing robust confirmation of the significant roles played by both tectonics and eustasy at a regional scale.

Taxonomy and morphology of Calciopappus curvus sp. nov. (Syracosphaeraceae, Prymnesiophyceae), a novel appendage-bearing coccolithophore

Based on scanning electron microscopy observations, a new species of the coccolithophore genus Calciopappus (Syracosphaeraceae, Prymnesiophyceae) is described from the surface waters off Bergen and from the lower photic zone of sub-tropical and tropical waters. Morphological, coccolith rim structure and biometric analyses strongly support separation of this morphotype from the two described Calciopappus species, but inclusion of it within the genus. The new form differs from the other species in being noticeably smaller and in morpho-structural details of each of the three coccolith types that form the coccosphere: (1) the body coccoliths have an open central area; (2) the whorl coccoliths have a wide central opening and two thumb-like protrusions; and (3) the appendage coccoliths are curved. On this basis, the species is formally described as Calciopappus curvus sp. nov., its systematic affinity is discussed and compared with other extant coccolithophores.

Effects of vertical mixing on the Lake Michigan food web: an application of a linked end-to-end earth system model framework

AbstractPhysical processes may affect ecosystem structure and function through the accumulation, transport, and dispersal of organic and inorganic materials, nutrients, and organisms; they structure physical habitat and can influence predator–prey interactions and trophic production. In the Laurentian Great Lakes, horizontal currents generally dominate, but little is known about the effects of vertical mixing on lake food webs. We developed a linked earth system model and used it to explore how vertical mixing affects the productivity of Lake Michigan (LM), the world’s fifth-largest lake, whose food web and fisheries have been adversely affected by invasive Dreissena mussels. We hypothesized that higher vertical mixing would result in higher food web biomass by making phosphorus more available to the lower food web, and that filtration by invasive mussels would counter the effects of mixing and decrease food web biomass. Using linked climate, hydrodynamics, and ecosystem models, we projected the response of LM’s food web to scenarios of different levels of vertical mixing, with and without invasive mussels. Biomass of most functional food web groups increased with increases in vertical mixing, with the greatest increases in phytoplankton and zooplankton. Increased biomass was due to the replenishment of nutrients into the euphotic zone, which enhanced growth and biomass of lower trophic levels through bottom-up effects. However, filtration by invasive mussels reduced the positive effects of mixing for most species. Future applications of the linked earth system framework will explore the effects of climate warming and nutrient reduction on fisheries production to inform fisheries managers.

Distinct habitat and biogeochemical properties of low‐oxygen‐adapted tropical oceanic phytoplankton

AbstractWe use data collected by Biogeochemical Argo (BGC‐Argo) float, over a 5‐year period (2016–2021), to study the dynamics of a unique low‐oxygen‐adapted phytoplanktonic community in the eastern tropical North Pacific. We isolate this community using a model that partitions vertical profiles of chlorophyll a (Chl a) and particulate backscattering into the contributions of three communities of phytoplankton: C1, the community in the mixed‐layer; C2, at the deep Chl a maximum; and C3, in low‐oxygen waters at the base of the euphotic zone. We find that C3 has a similar chl‐specific particulate backscattering to C2, both lower than C1. C2 and C3 contribute significantly to integrated stocks of Chl a, both at around 41%, and both around 30% of integrated particulate backscattering (after removing a background signal attributed to nonalgal particles). Found at depths of around 100 m, the peak biomass of C3 is lower than C2 (located at around 60 m), and yet, C3 makes similar contributions to integrated stocks, because it has a broader peak than C2. In relation to C1 and C2, C3 thrives in a lower temperature, higher density, lower light, lower oxygen, and higher saline habitat. This work illustrates how BGC‐Argo floats, in combination with simple conceptual models, can be used to observe the dynamics of unique communities of phytoplankton in extreme environments. The projected climate‐driven changes in oxygen minimum zones add urgency to understand the vulnerabilities of these communities both in terms of stocks and composition.

Characterization and source of fluorescent dissolved organic matter in the Western Arctic Ocean: new insights from the 2019 summer study

Increase in river discharge and seasonal primary production and decline in sea ice coverage in the Arctic Ocean in summer can significantly affect the distribution and composition of dissolved organic matter (DOM). This study aimed to enhance the current available knowledge about the impacts of environmental changes on the characteristics of DOM in the rapidly changing Arctic Ocean. Seawater samples were collected from the western Arctic Ocean during the summer of 2019 and analyzed for fluorescent DOM (FDOM), dissolved organic carbon (DOC), and stable oxygen isotope (δ18O) content in conjunction with biophysical properties. We identified two humic-like (C1 and C2) and one protein-like (C3) components using fluorescence excitation-emission matrix coupled with parallel factor (EEM–PARAFAC) analysis. Remarkably high intensities of humic-like FDOM were found in the upper halocline layer (32 < salinity < 33.5 psu, at depths between 50–200 m) with high inorganic nutrient concentrations and low N* values, indicating that the humic-like FDOM was supplied from the shelf sediment. Furthermore, shoaling of the upper halocline layer brought high levels of humic-like FDOM to the euphotic zone, resulting in an increased probability of photodegradation of humic-like FDOM due to exposure to solar radiation in the surface layer. Tryptophan-like FDOM was positively correlated with river water fraction (friver) and riverine DOC but not with chlorophyll-a (Chl-a) and heterotrophic bacterial abundance, indicating river discharge as a potential additional source of tryptophan-like FDOM. The correlation coefficients between tryptophan-like FDOM and river water parameters (friver and riverine DOC) differed across the Chukchi Sea, Chukchi Borderland, and East Siberian Sea, implying that the influence of river discharge on tryptophan-like FDOM is region-dependent. An increase in river discharge in future might lead to a greater supply of tryptophan-like FDOM, impacting the dynamics of DOM cycling in the western Arctic Ocean.

Benthic Foraminifera as A Tool for Indication of Microfacies, Biostratigraphy, and Depositional Environment of the Baba Formation [Late Oligocene], Kirkuk Oil Field, Northeastern Iraq

A moderately diverse larger foraminiferal is described from the NE Iraq, Baba Formation with important stratigraphy, paleontology, microfacies, and palaeoenvironment implications. The fauna is dominated by hyaline perforated and porcellaneous forms including Nummulites, Austrotrillina, Amphistegina, Archaias, Lepidocyclina, Spiroclypeus, Operculina, and Neorotalia. The presence of those fossils allows the age of the formation to be determined as Late Rupelian [Shallow Benthic Zone SBZ 22A] - Early Chattian [Shallow Benthic Zone SBZ 22B], based on the two recognized biozones from older to younger: - Nummulites fichteli -Nummulites intermedius biozone and Lepidocyclina [Eulephidina] dilatata- Nummulites intermedius- Nummulites fichteli biozone. The identified benthic foraminifera were used to recognize three microfacies types: Nummulitic wackestone facies of inner-shelf environment, Nummulitic wackestone-packstone facies of middle-shelf environment, and Epicyclical packstone facies of outer-shelf environment. The palaeoenvironmental setting of the Baba Formation is interpreted as a shallow ramp lagoon environment rich in nutrients, slightly hyper-saline with the shallowest part of the photic zone characterized by the genera Archaias and Austrotrillina, the deeper part of the inner ramp with Nummulites, to the shallow part of the middle ramp with Spiroclypeus and Operculina, to deeper middle ramp setting dominated by coralline rhodoliths along with Lepidocylinids. Microfossils from Baranan and Kurdamir sections have been used for the regional correlations from Eocene-Early Miocene.

Heritage Stone 9. Tyndall Stone, Canada’s First Global Heritage Stone Resource: Geology, Paleontology, Ichnology and Architecture

Tyndall Stone is a distinctively mottled and strikingly fossiliferous dolomitic limestone that has been widely used for over a century in Canada, especially in the Prairie Provinces. It comprises 6–8 m within the lower part of the 43 m thick Selkirk Member of the Red River Formation, of Late Ordovician (Katian) age. It has been quarried exclusively at Garson, Manitoba, 37 km northeast of Winnipeg, since about 1895, and for the past half-century extraction has been carried out solely by Gillis Quarries Ltd. The upper beds tend to be more buff-coloured than the grey lower beds, as a result of groundwater weathering. Tyndall Stone, mostly with a smooth or sawn finish, has been put to a wide variety of uses, including exterior and interior cladding with coursed and random ashlar, and window casements and doorways. Split face finish and random ashlar using varicoloured blocks split along stylolites have become popular for commercial and residential buildings, respectively. Tyndall Stone lends itself to carving as well, being used in columns, coats of arms and sculptures. Many prominent buildings have been constructed using Tyndall Stone, including the provincial legislative buildings of Saskatchewan and Manitoba, the interior of the Centre Block of the House of Commons in Ottawa, courthouses, land titles buildings, post offices and other public buildings, along with train stations, banks, churches, department stores, museums, office buildings and university buildings. These exhibit a variety of architectural styles, from Beaux Arts to Art Deco, Châteauesque to Brutalist. The Canadian Museum of History and the Canadian Museum for Human Rights are two notable Expressionist buildings. The lower Selkirk Member is massive and consists of bioturbated, bioclastic wackestone to packstone, rich in crinoid ossicles. It was deposited in a low-energy marine environment within the photic zone, on the present-day eastern side of the shallow Williston Basin, which was part of the vast equatorial epicontinental sea that covered much of Laurentia at the time. Scattered thin bioclastic grainstone lenses record episodic, higher energy events. Tyndall Stone is spectacularly fossiliferous, and slabs bearing fossils have become increasingly popular. The most common macrofossils are receptaculitids, followed by corals, stromatoporoid sponges, nautiloid cephalopods, and gastropods. The relative abundance of the macrofossils varies stratigraphically, suggesting that subtle environmental changes took place over time. The distinctive mottles—‘tapestry’ in the trade—have been regarded as dolomitized burrows assigned to Thalassinoides and long thought to have been networks of galleries likely made by arthropods. In detail, however, the bioclastic muddy sediment underwent a protracted history of bioturbation, and the large burrows were mostly horizontal back-filled features that were never empty. They can be assigned to Planolites. The matrix and the sediment filling them were overprinted by several generations of smaller tubular burrows mostly referrable to Palaeophycus due to their distinctive laminated wall linings. Dolomite replaced the interiors of the larger burrows as well as smaller burrows and surrounding matrix during burial, which is why the mottling is so variable in shape.

The transition from hydrothermal oxic conditions to restricted euxinia in the lower cambrian yurtus formation black shale, Tarim Basin

The Yurtus Formation is generally believed as one of the most potential hydrocarbon source rocks under the Cambrian gypsum-salt bed in the Tarim Basin of China. This formation exhibits unique geochemical characteristics during the Ediacaran-Cambrian transition period. In this study, we investigated the lower and upper black shales from the Yurtus Formation for the high-resolution geochemical analysis in order to further characterize the prevailing redox conditions and sedimentary mechanisms involved in the organic matter accumulation process. During the deposition of the lower black shale with high TOC in Unit2, the high concentrations of phosphorite and barite, and the REE geochemistry manifested a mixture of hydrothermal fluid and seawater. Through in-situ laser ablation–inductively coupled plasma–mass spectrometry (LA-ICP-MS), we explored the element distribution of the drill-core-preserved phosphate nodule, indicating that the phosphogenesis may be related to the involvement of bacteria activities under intermittently oxic bottom waters or consistently free oxygen conditions. Biomarker evidence by the identification of green sulfur bacteria demonstrated the occurrence of photic zone euxinia (PZE), and the trace metal patterns revealed intermittently bottom water oxygenation and stratified ocean which was consistent with the scenario of phosphate nodule formation. In contrast, the upper black shale with relatively low TOC was characterized by a detrital input, with significantly decreasing redox-sensitive trace mental enrichment (UEF, MoEF, VEF) and positive excursion of carbon isotopes, as well as a positive relationship between ∑REE and Al. The present study provides more explicit insights into not only the sedimentary mechanism of the black shale, but also the evolution of the Earth system at the key interval of the early Cambrian.

Strong particle dynamics counteract the nutrient-pumping effect leading to weak carbon flux in a cyclonic eddy

Sinking particles play a crucial role in transferring carbon from the atmosphere to the deep ocean. However, due to intensive particle transformations such as aggregation, disaggregation, and remineralization, only a small portion of the organic carbon produced in the euphotic zone ends up being sequestered in the deep ocean or sediment. Mesoscale eddies can significantly impact the surface ocean nutrient budget, primary production, and carbon export. Despite this, there is still a lack of research on how particle dynamics in eddy-impacted regions affect the efficiency of carbon export. In this study, we used observations of thorium isotopes (234Th and 228Th) and particulate organic carbon (POC) at two stations in the South China Sea (TS1: a decaying-eddy-impacted station and SEATS: an oligotrophic station) and an inverse model to investigate the impact of particle dynamics on particle export efficiency. Our findings indicate that particle remineralization/fragmentation was enhanced inside the eddy, which counteracted the nutrient pumping effect that promotes surface ocean productivity and eventually led to even lower carbon flux compared to the oligotrophic station.

Lipid biomarkers recording marine microbial community structure changes through the Frasnian-Famennian mass extinction event.

Studying the response and recovery of marine microbial communities during mass extinction events provides an evolutionary window through which to understand the adaptation and resilience of the marine ecosystem in the face of significant environmental disturbances. The goal of this study is to reconstruct changes in the marine microbial community structure through the Late Devonian Frasnian-Famennian (F-F) transition. We performed a multiproxy investigation on a drill core of the Upper Devonian New Albany Shale from the Illinois Basin (western Kentucky, USA). Aryl isoprenoids show green sulfur bacteria expansion and associated photic zone euxinia (PZE) enhancement during the F-F interval. These changes can be attributed to augmented terrigenous influxes, as recorded collectively by the long-chain/short-chain normal alkane ratio, carbon preference index, C30 moretane/C30 hopane, and diahopane index. Hopane/sterane ratios reveal a more pronounced dominance of eukaryotic over prokaryotic production during the mass extinction interval. Sterane distributions indicate that the microalgal community was primarily composed of green algae clades, and their dominance became more pronounced during the F-F interval and continued to rise in the subsequent periods. The 2α-methylhopane index values do not show an evident shift during the mass extinction interval, whereas the 3β-methylhopane index values record a greater abundance of methanotrophic bacteria during the extinction interval, suggesting enhanced methane cycling due to intensified oxygen depletion. Overall, the Illinois Basin during the F-F extinction experienced heightened algal productivity due to intensified terrigenous influxes, exhibiting similarities to contemporary coastal oceans that are currently undergoing globalized cultural eutrophication. The observed microbial community shifts associated with the F-F environmental disturbances were largely restricted to the extinction interval, which suggests a relatively stable, resilient marine microbial ecosystem during the Late Devonian.

Phylogeny and biogeography of the algal DMS-releasing enzyme in the global ocean

Phytoplankton produce the volatile dimethyl sulfide (DMS), an important infochemical mediating microbial interactions, which is also emitted to the atmosphere and affecting the global climate. Albeit the enzymatic source for DMS in eukaryotes was elucidated, namely a DMSP lyase (DL) called Alma1, we still lack basic knowledge regarding its taxonomic distribution. We defined unique sequence motifs which enable the identification of DL homologs (DLHs) in model systems and environmental populations. We used these motifs to predict DLHs in diverse algae by analyzing hundreds of genomic and transcriptomic sequences from model systems under stress conditions and from environmental samples. Our findings show that the DL enzyme is more taxonomically widespread than previously thought, as it is encoded by known algal taxa as haptophytes and dinoflagellates, but also by chlorophytes, pelagophytes and diatoms, which were conventionally considered to lack the DL enzyme. By exploring the Tara Oceans database, we showed that DLHs are widespread across the oceans and are predominantly expressed by dinoflagellates. Certain dinoflagellate DLHs were differentially expressed between the euphotic and mesopelagic zones, suggesting a functional specialization and an involvement in the metabolic plasticity of mixotrophic dinoflagellates. In specific regions as the Southern Ocean, DLH expression by haptophytes and diatoms was correlated with environmental drivers such as nutrient availability. The expanded repertoire of putative DL enzymes from diverse microbial origins and geographic niches suggests new potential players in the marine sulfur cycle and provides a foundation to study the cellular function of the DL enzyme in marine microbes.

An Overview of Rhodoliths: Ecological Importance and Conservation Emergency.

Red calcareous algae create bio-aggregations ecosystems constituted by carbonate calcium, with two main morphotypes: geniculate and non-geniculate structures (rhodoliths may form bio-encrustations on hard substrata or unattached nodules). This study presents a bibliographic review of the order Corallinales (specifically, rhodoliths), highlighting on morphology, ecology, diversity, related organisms, major anthropogenic influences on climate change and current conservation initiatives. These habitats are often widespread geographically and bathymetrically, occurring in the photic zone from the intertidal area to depths of 270 m. Due to its diverse morphology, this group offers a special biogenic environment that is favourable to epiphyte algae and a number of marine invertebrates. They also include holobiont microbiota made up of tiny eukaryotes, bacteria and viruses. The morphology of red calcareous algae and outside environmental conditions are thought to be the key forces regulating faunistic communities in algae reefs. The impacts of climate change, particularly those related to acidification, might substantially jeopardise the survival of the Corallinales. Despite the significance of these ecosystems, there are a number of anthropogenic stresses on them. Since there have been few attempts to conserve them, programs aimed at their conservation and management need to closely monitor their habitats, research the communities they are linked with and assess the effects they have on the environment.

Deconvolving mechanisms of particle flux attenuation using nitrogen isotope analyses of amino acids

AbstractParticulate organic matter settling out of the euphotic zone is a major sink for atmospheric carbon dioxide and serves as a primary food source to mesopelagic food webs. Degradation of this organic matter encompasses a suite of mechanisms that attenuate flux, including heterotrophic metabolic processes of microbes and metazoans. The relative contributions of microbial and metazoan heterotrophy to flux attenuation, however, have been difficult to determine. We present results of compound specific nitrogen isotope analysis of amino acids of sinking particles from sediment traps and size‐fractionated particles from in situ filtration between the surface and 500 m at Ocean Station Papa, collected during NASA EXPORTS (EXport Processes in the Ocean from RemoTe Sensing). With increasing depth, we observe: (1) that, based on the δ15N values of threonine, fecal pellets dominate the sinking particle flux and that attenuation of downward particle flux occurs largely via disaggregation in the upper mesopelagic; (2) an increasing trophic position of particles in the upper water column, reflecting increasing heterotrophic contributions to the nitrogen pool and the loss of particles via remineralization; and (3) increasing δ15N values of source amino acids in submicron and small (1–6 μm) particles, reflecting microbial particle solubilization. We further employ a Bayesian mixing model to estimate the relative proportions of fecal pellets, phytodetritus, and microbially degraded material in particles and compare these results and our interpretations of flux attenuation mechanisms to other, independent methods used during EXPORTS.