Essential oils obtained from Juniperus rigida Sieb. et Zucc. are potential natural sources for perfume and health products, and are considered as natural antimicrobial agents. This study used chromatographic fingerprint analysis and quantitative ecological methods to research essential oil composition diversity and the antibacterial activity and key soil factors affecting the synthesis of essential oils in J. rigida, which were from the different elevations in Helan Mountain (the arid hinterland) and Changbai Mountain (the humid region). Statistical results showed that the essential oil compounds of J. rigida in Helan Mountain were classified into 3 groups: germacrene D (2063 m, 2280 m, and 2340 m), β-caryophyllene (1568 m, 1883 m, and 2112 m), and α-pinene chemotype (1741 m, 1801 m, and 2182 m). While in Changbai Mountain, they can be classified into 2 major groups, the α-pinene chemotype (838 m and 1203 m) and the sylvestrene/β-myrcene chemotype (885 m, 1073 m, and 1170 m). The essential oils in middle-high elevations (2112−2280 m) in Helan Mountain were of higher yields, composition, chemical composition diversity, and antibacterial activity than low elevations. The essential oils of J. rigida needles in middle-high elevations (1073−1203 m) in Changbai Mountain had lower diversity chemical compositions but better antibacterial activity. The antibacterial activity was closely related to terpenoids in essential oils of J. rigida. Middle-high elevations in Helan and Changbai Mountains provided an excellent source of cosmetics, perfume, and industrial product development from J. rigida. Phosphorus and potassium fertilizers and water conditions should be considered first in the management of cultivation J. rigida. This study researched suitable elevations and cultivation management of J. rigida for the improvement of quality and biological activity of essential oil especially in the arid hinterland and gave insights into resource utilization, perfume and fragrance product development.
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