A small-scale (up to 5 kWe) biogas-solid oxide fuel cell (SOFC) energy system is an envisioned system, which can be used to meet both electrical and thermal energy demand of off-grid settlements. SOFC systems are reported to be more efficient than alternatives like internal combustion engines (ICE). In addition to energy recovery, implementation of biogas-SOFC systems can enhance sanitation among these settlements. However, the capital investment costs and the operation and maintenance costs of a biogas-SOFC energy system are currently higher than the existing alternatives. From previous works, H2S removal by biochar was proposed as a potential local cost-effective alternative. This research demonstrates the techno-economic potential of locally produced biochars made from cow manure, jackfruit leaves, and jack fruit branches in rural Uganda for purifying the biogas prior to SOFC use. Results revealed that the use of biochar from cow manure and jack fruit leaves can reduce H2S to below the desired 1 ppm and substitute alternative biogas treatments like activated carbon. These experimental results were then translated to demonstrate how this biochar would improve the economic feasibility for the implementation of biogas-SOFC systems. It is likely that the operation and maintenance cost of a biogas-SOFC energy system can in the long run be reduced by over 80%. Also, the use of internal reforming as opposed to external reforming can greatly reduce the system capital cost by over 25% and hence further increase the chances of system economic feasibility. By applying the proposed cost reduction strategies coupled with subsidies such as tax reduction or exemption, the biogas-SOFC energy system could become economically competitive with the already existing technologies for off-grid electricity generation, like solar photovoltaic systems.