Eucommiae Cortex (Duzhong) has been collected in several Pharmacopoeias. However, its Pharmacopoeia quality-marker is outdated and unreasonable. Therefore, the study used database-aided ultra-high-performance liquid chromatography coupled with hybrid quadrupole-orbitrap tandem mass spectrometry (UHPLC-Q-Exactive-Orbitrap MS/MS) analysis to putatively identify 33 compounds from Eucommiae Cortex. Especially, 14 “unexcavated” compounds were detected in Eucommiae Cortex for the first time; Meanwhile, all monocaffeoylquinic acid isomers (i.e., 1-O-, 3-O-, 4-O-, and 5-O- caffeoylquinic acids) have been strictly distinguished from each other, and three dicaffeoylquinic acid isomers (1,3-O-, 3,5-O-, and 4,5-O- dicaffeoylquinic acids) have been distinguished as well. All identified compounds were further subjected to a semi-quantification analysis, through which cholesteryl acetate (4.11 ± 0.46 %), sucrose (3.53 ± 0.063 %), and (−)-syringaresinol (2.81 ± 1.31 %) were found to be highly abundant. Furthermore, the semi-quantification results were integrated with ABTS+• antioxidant assay to individually calculate the antioxidant contribution of all compounds. (−)-Syringaresinol, neochlorogenic acid, vanillic acid, chlorogenic acid, and (−) pinoresinol were proven to be the top five antioxidant contributors, and their contribution values were 97.50, 46.31, 40.57, 35.05, and 30.90. Of the top contributors, chlorogenic acid was proposed as an additional pharmacopoeia Q-marker for its good testability and traceability. The additional Q-marker not only enhances the pharmacological relevance, but also effectively recognizes Eucommiae Cortex from its counterfeiting via liquid chromatography analysis. Thus, these findings will help Pharmacopoeias to update its Q-markers.
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