Counterion Release Research Articles

Possibility of identifying 1H-indolylaminium trifluoroacetates with antimicrobial activity by mass spectrometry

The present study proposes a convenient approach to identify a series of novel substituted 1H-indol-5-,6-ylaminium trifluoroacetates with antimicrobial activity based on mass spectral data obtained using direct injection into an ion source at an elevated temperature when the salts decompose with the release of counterions: acids and organic bases – substituted 1H-indolylamines. By the presence of ions with m/z 69, 45, 28, 17 in the spectra, it is judged that the salts are formed by trifluoroacetic acid. Using the available literature data on the mass spectrometry of substituted indoles, aromatic amines, and carboxylic acids, substantiated schemes for the decomposition of molecular ions of organic bases, 1H-indolylamines, are compiled and discussed, in which the mechanism of formation and the structure of fragment ions arising under electron ionization conditions are given. The revealed general, as well as individual for individual representatives with a certain character and place of substitution in the indole bicycle, patterns of behavior of 1H-indolylamine radical ions under conditions of high-temperature mass spectral imaging make it possible to judge their structure and, in general, the structure of 1H-indolylamine trifluoroacetates. The approach used in this work can also be used to prove compounds of a similar group based on the analysis of their mass spectra.

Mixing Order Asymmetry in Nanoparticle-Polymer Complexation and Precipitation Revealed by Isothermal Titration Calorimetry.

In recent years, there has been a renewed interest in complex coacervation, driven by concerted efforts to offer novel experimental and theoretical insights into electrostatic charge-induced association. While previous studies have primarily focused on polyelectrolytes, proteins, or surfactants, our work explores the potential of using cerium (CeO2) and iron (γ-Fe2O3) oxide nanoparticles (NPs) to develop innovative nanomaterials. By combining various charged species, such as polyelectrolytes, charged neutral block copolymers, and coated NPs, we study a wide variety of complexation patterns and compare them using isothermal titration calorimetry, light scattering, and microscopy. These techniques confirm that the titration of oppositely charged species occurs in two steps: the formation of polyelectrolyte complexes and subsequent phase (or microphase) separation, depending on the system studied. Across all examined cases, the entropic contribution to the total free energy surpasses the enthalpic contribution, in agreement with counterion release mechanisms. Furthermore, our investigation reveals a consistent asymmetry in the reaction enthalpy associated with the secondary process, with exothermic profiles observed upon the addition of cationic species to anionic ones and endothermic profiles in the reverse case.

Counterion Release from Macroion Assemblies of Planar Geometry.

Macroions such as nanoparticles, polyelectrolytes, ionic gels, and amphiphiles can form condensed, often self-assembled, phases that are embedded in a solvent region. The condensed phase contains not only the partially or fully immobile charges of their macroions but also corresponding counterions that are mobile and thus free to migrate out of their confinement into the solvent region where they benefit from high translational entropy. Based on the nonlinear Poisson-Boltzmann model for monovalent ions, we quantify the corresponding fraction of released counterions for a planar slab geometry of the macroion phase. Slab thickness, extension of the solvent phase, fixed background charge density provided by the macroions, and dielectric constants inside slab and solvent combine into three dimensionless parameters that the fraction of released counterions depends on. We calculate that fraction and analyze the limits of a thin macroion phase, a large solvent phase, and linearized theory, where simple analytic results become available. Of particular interest is the presence of a single-planar interface that separates a bulk macroion phase from an extended solvent region. We calculate the apparent surface charge density that emerges due to the released counterions. Our model yields a comprehensive description of counterion partitioning between a planar macroion phase and a solvent region on the level of mean-field electrostatics in the absence of added salt ions.

Distribution of polyelectrolytes and counterions upon polyelectrolyte complexation

HypothesisUnderstanding polyelectrolyte complexation remains limited due to the absence of a systematic methodology for analyzing the distribution of components between the polyelectrolyte complex (PEC) and the dilute phases. ExperimentsWe developed a methodology based on NMR to quantify all components of solid-like PECs and their supernatant phases formed by mixing different ratios of poly(allylamine hydrochloride) (PAH) and poly(acrylic acid)-sodium salt (PAA). This approach allowed for determining relative and absolute concentrations of polyelectrolytes in both phases by 1H NMR studies. Using 23Na and 35Cl NMR spectroscopy we measured the concentration of counterions in both phases. FindingsRegardless of the mixing ratio of the polyelectrolytes the PEC is charge-stoichiometric, and any excess polyelectrolytes to achieve charge stoichiometry remains in the supernatant phase. The majority of counterions were found in the supernatant phase, confirming counterion release being a major thermodynamic driving force for PEC formation. The counterion concentrations in the PEC phase were approximately twice as high as in the supernatant phase. The complete mass balance of PEC formation could be determined and translated into a molecular picture. It appears that PAH is fully charged, while PAA is more protonated, so less charged, and some 10% extrinsic PAH-Cl- pairs are present in the complex.

Impedance spectra of soft ionics

Impedance spectroscopy is widely adopted for probing the charge and charge mobility of soft ion-conducting media, such as synthetic membranes and biological tissue. The spectra exhibit a variety of distinctive signatures, but the physical basis of these is not well understood, e.g. models have not previously accounted for viscoelasticity, hydrodynamics or microstructural heterogeneity. This study explores a physically grounded continuum model that captures how these factors shape conductivity spectra. Nonlinear thermodynamics and linearised dynamics of a viscous electrolyte and compressible, elastic polymer network are coupled under the forcing of an oscillatory electric field. The model is solved in a one-dimensional spatially periodic unit cell, reporting conductivity and dielectric permittivity spectra, including Nyquist representations. Whereas rigid microstructures exhibit ion-diffusion-controlled relaxation, which manifests as a low-frequency dielectric ‘constant’, hydrodynamic and elastic forces contribute to a strongly diverging dielectric permittivity at low frequencies for heterogeneous anionic microstructures. The model also captures distinctive characteristics of experimentally reported impedance spectra for films bearing alternating layers of cationic and anionic charge, again highlighting the role of coupled hydrodynamic, elastic and electrical forces. Sufficiently thin and highly charged bilayers exhibit a notably low high-frequency conductivity. This is explained by strong low-frequency electrostatic polarisation and counter-ion release. The one-dimensional solutions computed herein provide a foundation for much more challenging computations in two and three dimensions.

Immunopotentiating Polyphosphazene Delivery Systems: Supramolecular Self-Assembly and Stability in the Presence of Plasma Proteins.

Studies on the biological performance of nanomedicines have been increasingly focused on the paradigm shifting role of the protein corona, which is imminently formed once the formulation is placed in a complex physiological environment. This phenomenon is predominantly studied in the context of protein adsorption science, while such interactions for water-soluble systems remain virtually unexplored. In particular, the importance of plasma protein binding is yet to be understood for pharmaceuticals designed on the basis of supramolecular architectures, which generally lack well-defined surfaces. Water-soluble ionic polyphosphazenes, clinically proven immunoadjuvants and vaccine delivery vehicles, represent an example of a system that requires supramolecular coassembly with antigenic proteins to attain an optimal immunopotentiating effect. Herein, the self-assembly behavior and stability of noncovalently bound complexes on the basis of a model antigen─hen egg lysozyme─and polyphosphazene adjuvant are studied in the presence of plasma proteins utilizing isothermal calorimetry, asymmetric flow field flow fractionation, dynamic light scattering, and size exclusion chromatography methods. The results demonstrate that although plasma proteins, such as human serum albumin (HSA), show detectable avidity to polyphosphazene, the strength of such interactions is significantly lower than that for the model antigen. Furthermore, thermodynamic parameters indicate different models of binding: entropy driven, which is consistent with the counterion release mechanism for albumin versus electrostatic interactions for lysozyme, which are characterized by beneficial enthalpy changes. In vitro protein release experiments conducted in Franz diffusion cells using enzyme-linked immunoassay detection suggest that the antigen-adjuvant complex stability is not adversely affected by the presence of the most physiologically abundant protein, which confirms the importance of the delivery modality for this immunoadjuvant. Moreover, HSA shows an unexpected stabilizing effect on complexes with high antigen load─an important consideration for further development of polyphosphazene adjuvanted vaccine formulations and their functional assessment.

Monte Carlo simulation of the ionization and uptake behavior of cationic oligomers into pH-responsive polyelectrolyte microgels of opposite charge - a model for oligopeptide uptake and release.

External stimuli can tune the uptake and release of guest molecules in microgels. Especially their pH responsiveness makes microgels exciting candidates for drug delivery systems. When both microgel and guest molecules are pH-responsive, predicting the electrostatically driven uptake can be complex since the ionization depends on many parameters. In this work, we performed Metropolis Monte Carlo simulations while systematically varying the pK of the monomers, the concentrations of microgel and guest molecules to obtain a better understanding of the uptake of weak cationic oligomers as a model for oligopeptides into a weak anionic polyelectrolyte microgel. Further, we varied the chain length of the oligomers. The polyelectrolyte networks can take up oligomers when both the network and the oligomers are charged. The presence of both species in the system leads to a mutual enhancement of their ionization. The uptake induces a release of counterions and results in complex formation between the oligomers and the network, leading to the collapse of the networks. Longer oligomers enhance the ionization of the network and, therefore, the complexation. A higher microgel concentration increases the uptake only around the isoelectric point but prevents the uptake due to lower entropy gain at counterion release at higher pH. The results give an insight into the uptake of cationic oligomers into oppositely charged polyelectrolyte microgels and provide hints for the design of anionic microgels as carriers for guest molecules e.g. antimicrobial peptides.

Entropy gain from counterion release

Entropy gain from counterion release

Antifouling Coatings from Glassy Polyelectrolyte Complex Films.

Coatings that prevent or decrease fouling are sought for many applications, including those that inhibit the attachment of organisms in aquatic environments. To date, antifouling coatings have mostly followed design criteria assembled over decades: surfaces should be well/strongly hydrated, possess low net charge, and maintain a hydrophilic character when exposed to the location of use. Thus, polymers based on ethylene glycol or zwitterionic repeat units have been shown to be highly effective. Unfortunately, hydrated materials can be quite soft, limiting their use in some environments. In a major paradigm shift, this work describes glassy antifouling films made from certain complexes of positive and negative polyelectrolytes. The dense network of electrostatic interactions yields tough materials below the glass transition temperature, Tg, in normal use, while the highly ionic character of these polyelectrolyte complexes ensures strong hydration. The proximity of equal numbers of opposite charges within these complexes mimics zwitterionic structures. Films, assembled layer-by-layer from aqueous solutions, contained sulfonated poly(ether ether ketone), SPEEK, a rigid polyelectrolyte that binds strongly to a selection of quaternary ammonium polycations. Layer-by-layer buildup of SPEEK and polycations was linear, indicating strong complexes between polyelectrolytes. Calorimetry also showed that complex formation was exothermic. Surfaces coated with these films in the 100 nm thickness range completely resisted adhesion of the common flagellate green algae, Chlamydomonas reinhardtii, which were removed from surfaces at a minimum applied flow rate of 0.8 cm s-1. The total surface charge density of adsorbed cations, determined with a sensitive radioisotopic label, was very low, around 10% of a monolayer, which minimized adsorption driven by counterion release from the surface. The viscoelastic properties of the complexes, which were stable even in concentrated salt solutions, were explored using rheology of bulk samples. When fully hydrated, their Tg values were observed to be above 75 °C.

Driving forces of the complex formation between highly charged disordered proteins

Highly disordered complexes between oppositely charged intrinsically disordered proteins present a new paradigm of biomolecular interactions. Here, we investigate the driving forces of such interactions for the example of the highly positively charged linker histone H1 and its highly negatively charged chaperone, prothymosin α (ProTα). Temperature-dependent single-molecule Förster resonance energy transfer (FRET) experiments and isothermal titration calorimetry reveal ProTα-H1 binding to be enthalpically unfavorable, and salt-dependent affinity measurements suggest counterion release entropy to be an important thermodynamic driving force. Using single-molecule FRET, we also identify ternary complexes between ProTα and H1 in addition to the heterodimer at equilibrium and show how they contribute to the thermodynamics observed in ensemble experiments. Finally, we explain the observed thermodynamics quantitatively with a mean-field polyelectrolyte theory that treats counterion release explicitly. ProTα-H1 complex formation resembles the interactions between synthetic polyelectrolytes, and the underlying principles are likely to be of broad relevance for interactions between charged biomolecules in general.

Watching ion-driven kinetics of ribozyme folding and misfolding caused by energetic and topological frustration one molecule at a time.

Folding of ribozymes into well-defined tertiary structures usually requires divalent cations. How Mg2+ ions direct the folding kinetics has been a long-standing unsolved problem because experiments cannot detect the positions and dynamics of ions. To address this problem, we used molecular simulations to dissect the folding kinetics of the Azoarcus ribozyme by monitoring the path each molecule takes to reach the folded state. We quantitatively establish that Mg2+ binding to specific sites, coupled with counter-ion release of monovalent cations, stimulate the formation of secondary and tertiary structures, leading to diverse pathways that include direct rapid folding and trapping in misfolded structures. In some molecules, key tertiary structural elements form when Mg2+ ions bind to specific RNA sites at the earliest stages of the folding, leading to specific collapse and rapid folding. In others, the formation of non-native base pairs, whose rearrangement is needed to reach the folded state, is the rate-limiting step. Escape from energetic traps, driven by thermal fluctuations, occurs readily. In contrast, the transition to the native state from long-lived topologically trapped native-like metastable states is extremely slow. Specific collapse and formation of energetically or topologically frustrated states occur early in the assembly process.

Feasibility of sugarcane bagasse/polydopamine as sustainable adsorbents for Cr(VI) with reusability in cement composition

The removal of pollutants from water should be followed by a proper treatment of the spent adsorbents. In this study, sugarcane bagasse/polydopamine (SB/PDA) adsorbents were applied in batch and column adsorption studies towards Cr(VI) ions. Adsorbents prepared with higher concentration of dopamine (4 g.L−1) led to more efficient adsorbents (SB/PDA4) and maximum adsorption capacity (qmax) of 138 mg.g−1. X-ray photoelectron spectroscopy (XPS) analyses revealed that the adsorption mechanism involved ion-dipole and electrostatic interactions between Cr(VI) and the PDA functional groups. The spontaneous (ΔGads - 9 kJ mol−1) adsorption process was driven by an entropic gain related to the release of counter-ions and water molecules. Under optimized operational conditions, the maximum adsorption capacity in the fixed-bed column achieved the adsorption capacity of 141.7 mg.g−1. Considering the circular economy principles, the contaminated adsorbents were incorporated to cement pastes. No leaching of Cr(VI) from the cement/adsorbent samples could be detected over 64 days, and their mechanical behavior was comparable to the reference cement samples. The efficient removal of Cr(VI) from wastewater by SB/PDA adsorbents and the successful incorporation of spent adsorbents to cement demonstrated a sustainable management of liquid and solid wastes.

Polymer complexation: Partially ionizable asymmetric polyelectrolytes.

Theories of bulk coacervation of oppositely charged polyelectrolytes (PE) obscure single molecule level thermodynamic details, considered significant for coacervate equilibrium, whereas simulations account for only pairwise Coulomb interaction. Also, studies of effects of asymmetry on PE complexation are rare compared to symmetric PEs. We develop a theoretical model, accounting for all entropic and enthalpic contributions at the molecular level, and the mutual segmental screened Coulomb and excluded volume interactions between two asymmetric PEs, by constructing a Hamiltonian following Edwards and Muthukumar. Assuming maximal ion-pairing in the complex, the system free energy comprising configurational entropy of the polyions and free-ion entropy of the small ions is minimized. The effective charge and size of the complex, larger than sub-Gaussian globules as for symmetric chains, increase with asymmetry in polyion length and charge density. The thermodynamic drive for complexation is found to increase with ionizability of symmetric polyions and with a decrease in asymmetry in length for equally ionizable polyions. The crossover Coulomb strength demarcating the ion-pair enthalpy-driven (low strength) and counterion release entropy-driven (high strength) is marginally dependent on the charge density, because so is the degree of counterion condensation, and strongly dependent on the dielectric environment and salt. The key results match the trends in simulations. The framework may provide a direct way to calculate thermodynamic dependencies of complexation on experimental parameters such as electrostatic strength and salt, thus to better analyze and predict observed phenomena for different sets of polymer pairs.

Interaction of a Histidine-Rich Antimicrobial Saliva Peptide with Model Cell Membranes: The Role of Histidines.

Histatin 5 is a histidine-rich, intrinsically disordered, multifunctional saliva protein known to act as a first line of defense against oral candidiasis caused by Candida albicans. An earlier study showed that, upon interaction with a common model bilayer, a protein cushion spontaneously forms underneath the bilayer. Our hypothesis is that this effect is of electrostatic origin and that the observed behavior is due to proton charge fluctuations of the histidines, promoting attractive electrostatic interactions between the positively charged proteins and the anionic surfaces, with concomitant counterion release. Here we are investigating the role of the histidines in more detail by defining a library of variants of the peptide, where the former have been replaced by the pH-insensitive amino acid glutamine. By using experimental techniques such as circular dichroism, small angle X-ray scattering, quartz crystal microbalance with dissipation monitoring, and neutron reflectometry, it was determined that changing the number of histidines in the peptide sequence did not affect the structure of the peptide dissolved in solution. However, it was shown to affect the penetration depth of the peptide into the bilayer, where all variants except the one with zero histidines were found below the bilayer. A decrease in the number of histidine from the original seven to zero decreases the ability of the peptide to penetrate the bilayer, and the peptide is then also found residing within the bilayer. We hypothesize that this is due to the ability of the histidines to charge titrate, which charges up the peptide, and enables it to penetrate and translocate through the lipid bilayer.

Physical basis of the cell size scaling laws.

Cellular growth is the result of passive physical constraints and active biological processes. Their interplay leads to the appearance of robust and ubiquitous scaling laws relating linearly cell size, dry mass, and nuclear size. Despite accumulating experimental evidence, their origin is still unclear. Here, we show that these laws can be explained quantitatively by a single model of size regulation based on three simple, yet generic, physical constraints defining altogether the Pump-Leak model. Based on quantitative estimates, we clearly map the Pump-Leak model coarse-grained parameters with the dominant cellular components. We propose that dry mass density homeostasis arises from the scaling between proteins and small osmolytes, mainly amino acids and ions. Our model predicts this scaling to naturally fail, both at senescence when DNA and RNAs are saturated by RNA polymerases and ribosomes, respectively, and at mitotic entry due to the counterion release following histone tail modifications. Based on the same physical laws, we further show that nuclear scaling results from a osmotic balance at the nuclear envelope and a large pool of metabolites, which dilutes chromatin counterions that do not scale during growth.

Analysis of the Binding of Cytokines to Highly Charged Polymer Networks.

A model describing the binding of biological signaling proteins to highly charged polymer networks ispresented. The networks are formed by polyelectrolyte chains for which the distance between two charges at the chain is smaller than the Bjerrum length. Counterion condensation on such highly charged chains immobilizes a part of the counterions. The Donnan-equilibrium between the polymer network and the aqueous solution with salt concentration is used to calculate the salt concentration of the co- and counterions entering the network. Two factors are decisive: i) The electrostatic interaction between the network and the protein is given by the Donnan-potential of the network and the net charge of the protein. In addition to this leading term, a second term describes the change in the Born-energy of the proteins when entering the network. ii) The interaction of the protein with the highly charged chains within the network is governed by counterion release: Patches of positive charge at the protein become multivalent counterions of the polyelectrolyte chains thus releasing a concomitant number of condensed counterions. The model compares favorably to experimental data obtained on a set of biohybrid polymer networks composed of crosslinked glycosaminoglycan chains that interact with a mixture of key signaling proteins.

Counterion effects on the alkali dissolution mechanism of quartz

In gold ore, quartz plays an important role in mineral formation by acting as the follower. Understanding counterion release, transport, and deposition in alkali solution is a prerequisite for evaluating the potential role of gold separate from quartz deposits in pretreatment. In this work, the aggregation, retention, and release of counterion in alkali solution media were investigated by kinetic research and pure mineral experiments, the correlation and mechanism of these processes were revealed by combining geochemical theory, interaction energy calculation, and quantum chemistry. The results showed that the retention and release of counterion were closely related to the dissolution and corrosion rate of quartz. The NH4+ and Fe2+ with higher mineral affinity reduced the quartz stability, and the dispersion stability and mobility of the quartz were greatly improved by an alkaline substance due to the enhancement of steric hindrance effects. Quantum chemical calculation results show that ammonium ion promotes the dissolution of quartz stronger than ferrous ion, which is mainly reflected in reducing the activation energy required for the formation of transition state (TS1), which can be verified by kinetic calculation. These findings provide essential insight into the extraction of gold coated by quartz as well as a vital reference for the experiment of gold-loaded quartz leaching in mineral processing.

Complexes of charged disordered polyelectrolyte-like proteins: From thermodynamics to stuctural plasticity.

The highly charged IDPs ProTα and H1 (−44 and +53, respectively) form a high-affinity, yet disordered complex and thus define a limiting case in the spectrum of disorder in IDP complexes [1-3]. Temperature-dependent single-molecule FRET (smFRET) experiments and isothermal titration calorimetry (ITC) reveal ProTα-H1 complexation to be enthalpically unfavorable. Using smFRET, we also identify stoichiometrically defined ternary complexes between ProTα and H1 at equilibrium and quantitate their salt-dependent stabilities, allowing us to accurately analyze ensemble experiments such as ITC performed with micromolar protein concentrations, where ternary complex formation is pronounced. Salt-dependent measurements show that counterion release entropy is a dominant driving force of complexation. An analytical polymer theory for polyelectrolyte complexation that explicitly accounts for counterions explains the thermodynamic results and suggests that the positive binding enthalpy is dominated by the relative exothermicities of counterion condensation and interchain ion-pair formation. Despite its high affinity, the disordered complex shows remarkable plasticity and expands continuously with increasing salt concentration, as seen from inter- and intramolecular FRET using various ProTα and H1 labeling variants. However, the salt-dependent expansion is non-uniform, which can be explained by differences in charge densities in different ProTα and H1 segments. Our investigations provide a comprehensive framework for the unconventional behavior of polyelectrolyte-like biomolecular complexes.

Molecular dynamics simulations of the adsorption of an intrinsically disordered protein: Force field and water model evaluation in comparison with experiments.

This study investigates possible structural changes of an intrinsically disordered protein (IDP) when it adsorbs to a solid surface. Experiments on IDPs primarily result in ensemble averages due to their high dynamics. Therefore, molecular dynamics (MD) simulations are crucial for obtaining more detailed information on the atomistic and molecular levels. An evaluation of seven different force field and water model combinations have been applied: (A) CHARMM36IDPSFF + CHARMM-modified TIP3P, (B) CHARMM36IDPSFF + TIP4P-D, (C) CHARMM36m + CHARMM-modified TIP3P, (D) AMBER99SB-ILDN + TIP3P, (E) AMBER99SB-ILDN + TIP4P-D, (F) AMBERff03ws + TIP4P/2005, and (G) AMBER99SB-disp + disp-water. The results have been qualitatively compared with those of small-angle X-ray scattering, synchrotron radiation circular dichroism spectroscopy, and attenuated total reflectance Fourier transform infrared spectroscopy. The model IDP corresponds to the first 33 amino acids of the N-terminal of the magnesium transporter A (MgtA) and is denoted as KEIF. With a net charge of +3, KEIF is found to adsorb to the anionic synthetic clay mineral Laponite® due to the increase in entropy from the concomitant release of counterions from the surface. The experimental results show that the peptide is largely disordered with a random coil conformation, whereas the helical content (α- and/or 310-helices) increased upon adsorption. MD simulations corroborate these findings and further reveal an increase in polyproline II helices and an extension of the peptide conformation in the adsorbed state. In addition, the simulations provided atomistic resolution of the adsorbed ensemble of structures, where the arginine residues had a high propensity to form hydrogen bonds with the surface. Simulations B, E, and G showed significantly better agreement with experiments than the other simulations. Particularly noteworthy is the discovery that B and E with TIP4P-D water had superior performance to their corresponding simulations A and D with TIP3P-type water. Thus, this study shows the importance of the water model when simulating IDPs and has also provided an insight into the structural changes of surface-active IDPs induced by adsorption, which may play an important role in their function.

Sequence Properties of An Intramolecular Interaction That Inhibits p53 DNA Binding.

An intramolecular interaction between the p53 transactivation and DNA binding domains inhibits DNA binding. To study this autoinhibition, we used a fragment of p53, referred to as ND WT, containing the N-terminal transactivation domains (TAD1 and TAD2), a proline rich region (PRR), and the DNA binding domain (DBD). We mutated acidic, nonpolar, and aromatic amino acids in TAD2 to disrupt the interaction with DBD and measured the effects on DNA binding affinity at different ionic strengths using fluorescence anisotropy. We observed a large increase in DNA binding affinity for the mutants consistent with reduced autoinhibition. The ΔΔG between DBD and ND WT for binding a consensus DNA sequence is -3.0 kcal/mol at physiological ionic strength. ΔΔG increased to -1.03 kcal/mol when acidic residues in TAD2 were changed to alanine (ND DE) and to -1.13 kcal/mol when all the nonpolar residues, including W53/F54, were changed to alanine (ND NP). These results indicate there is some cooperation between acidic, nonpolar, and aromatic residues from TAD2 to inhibit DNA binding. The dependence of DNA binding affinity on ionic strength was used to predict excess counterion release for binding both consensus and scrambled DNA sequences, which was smaller for ND WT and ND NP with consensus DNA and smaller for scrambled DNA overall. Using size exclusion chromatography, we show that the ND mutants have similar Stokes radii to ND WT suggesting the mutants disrupt autoinhibition without changing the global structure.