The efficient sample pretreatment and high-performance chromatographic separation are essential for an accurate analysis of the complex sample. Finding a material that can apply as both sorbent for sample preparation and stationary phase for chromatography is greatly important for analytical chemistry. With a large number of active sites and designable properties, the dendrimers displayed potential performance for sample preparation and chromatographic separation. In order to improve its selectivity restricted by the limited type of functional groups (amide, ethylidene, amino groups), ionic liquid (1,1′-(1,4-butyricdiyl)bis(1-aminopropyl imidazolium)dibromide) were introduced to functionalize dendrimers. With porous silica as the base, ionic liquid-functionalized dendrimer grafted silica (SiO2@G1.5-IL) was obtained and characterized by X-ray photoelectron spectroscopy, elemental analyzer, as well as specific surface and porosity analyzer. The material was used as stationary phase for mixed-mode chromatography and sorbent for SPE, respectively. Under reversed-phase liquid chromatography (RPLC), it successfully separated some hydrophobic analytes (five polycyclic aromatic hydrocarbons (PAHs), two bisphenols, diphenylpropane, and diphenylmethane), by utilizing hydrophobic, π-stacking and hydrogen bonding interactions. Based on the hydrophilic effect, it could separate hydrophilic analytes (nucleosides and alkaloids), which coincident with hydrophilic interaction liquid chromatography (HILIC). And it exhibited better separation capacity than NH2@SiO2 and SiO2@G1.5 under the above two modes. Furthermore, the thermodynamic parameters (ΔH, ΔS, and ΔG) of the above types of analytes on the SiO2@G1.5-IL column were also investigated in detail, revealing the controlling factors during the chromatographic separation. And the relative standard deviations (RSDs, 0.03–2.95%, n = 10) of the repeatability of chromatographic separation were satisfactory. After that, SiO2@G1.5-IL-based SPE column was online combined with high-performance liquid chromatography to investigate the extraction selectivity for three types of hydrophobic organic pollutants (PAHs, estrogens, and bisphenols), and compared to SiO2 and C18 columns. According to their extraction performance, PAHs were selected as the target analytes, and the online analytical method was established. The limits of detection were as low as 0.001 μg L-1 due to the high enrichment factor reach to 3869, limits of quantity were 0.003–0.17 μg L-1, linear ranges were from 0.003 to 15.0 µg L-1, the adsorption capacity was 16.10 μg g−1, as well as RSDs were 0.5–3.7%, 0.6–6.7%, and 4.2–9.0% for intraday, interday tests and reproducibility. Finally, it was applied to analyze the environmental water samples (tap water, snow water, and rainwater), and satisfactory results were obtained (spiked recoveries were 86.8%-120.9%). Therefore, SiO2@G1.5-IL was a powerful material that can be used for the chromatographic separation of both hydrophobic and hydrophilic samples by RPLC or HILIC mode, as well as the efficient online extraction of hydrophobic targets prior to C18 column-based high-performance liquid chromatography.