Our research aims to investigate the impact of injecting atomic coherence on the phase tunneling time of ultra slow cascade three-level atoms traversing through high-quality cavities. Prior to interacting with the cavity in the Fock state, the atoms are initially prepared in a superposition of the two upper levels. Our study has demonstrated that the coherence of the injected atoms can be tuned to control the phase time. Specifically, we have observed that the injected coherence can regulate the peak values and sub-superclassical nature of the traversal time. Moreover, we have investigated how the number of superclassical peaks and resonances in the tunneling time curve can be influenced by the cavity length and de Broglie waves of the atom. Additionally, we have discovered that the phase time behavior is not only affected by the center-of-mass (CM) motion but also by the atom–field detuning and the final internal state of the transmitted atoms. These findings have potential implications for developing and controlling ultracold atom-based technologies, such as quantum sensors, quantum information processing, and quantum simulation.