Poly (butylene adipate-co-terephthalate) (PBAT) and poly (butylene succinate) (PBS) are polyester materials with excellent biodegradability under soil and compost conditions. However, the research on their degradation process in the marine environment is scarce. In this study, a more realistic simulation marine environment with sediment and marine organisms was developed, followed by investigation of the biodegradation behavior of PBAT and PBS mulch in it. The effect of aromatic structure, carboxyl end group content, molecular weight, and inorganic fillers on the degeneration of mulch was characterized by the changes in appearance, chemical structure, thermal properties, and crystallinity via Fourier transform infrared spectroscopy, differential scanning calorimetry, thermogravimetric analysis, gel permeation chromatography, element analysis, and X-ray photoelectron spectroscopy. The molecular weight of polyester blends decreased, while the content of the C-O bond in the composites increased, indicating that the samples indeed degraded. The degradation rate was measured with the CO2 release amount. The aliphatic polyester structure, lower molecular weight, higher carboxyl end group content, and the involvement of inorganic fillers facilitate the disintegration of polyester in the marine environment, which provides an effective method to construct materials with controllable biodegradable performance.