Chalcogenides and 2D graphene are the emerging materials being investigated rigorously as efficient membrane filler materials for recovering minerals from seawater and for desalination through recrystallization. In this work quasi-2-dimensional bismuth selenide (Bi2Se3) nanostructure synthesized by microwave-assisted solvothermal method - mixed in ethylene glycol is used as the ink for depositing screen-printed film (SPF). A laboratory-scale experiment univocally demonstrates the possibility of application of SPF as an efficient membrane filler material for desalination processes such as in direct contact membrane distillation (DCMD). Morphology and topography studies confirm the growth of homogeneous hexagonal micro structures with an edge-to-edge length of 20–40 µm with a thickness of ~ 2–3 µm respectively and elemental mapping studies confirm the growth of sodium chloride (NaCl) crystals over the Bi2Se3 SPF. Growth of different morphology of NaCl (20–40 µm) including the metastable (111) oriented NaCl depicts that Bi2Se3 film assists the efficient crystallization process and helps in retaining the morphology of NaCl crystals with an enhanced crystal growth rate of the order of 10−8–10−9 m/s. Interestingly, thermoelectric power measurement in these Bi2Se3 nanostructures with n-type carriers and with Seebeck coefficient value of − 98 μV/K around the room temperature open up a new possibility for a combined desalination membrane filler application along with thermoelectric (TEP) application where the waste heat used for desalination/membrane crystallization can also be harvested in the form of useful electrical energy.