Biodiversity Patterns Research Articles

The Influence of Fragmented Landscapes on Speciation.

In the face of unprecedented global transformations, unraveling the intricate mechanisms governing biodiversity patterns is imperative for predicting and interpreting species responses. An important element in this interplay is fragmentation and the spatial mosaic or arrangement of suitable sites within the landscape. Beyond its well-documented impact on biodiversity loss, fragmented landscapes also influence the origin of biodiversity, by influencing speciation dynamics. This research employs a model that integrates spatial configuration and dispersal abilities of individuals to investigate the impact of landscape configuration on species' evolutionary trajectories. Specifically, we propose a microevolutionary model where individuals are characterized by their dispersal ability and a genome, allowing population evolution and diversification. Space is explicitly characterized by suitable and unsuitable sites that define fragmented landscapes. Our model demonstrates how intermediate dispersal abilities enhance diversification. However, simulations of more fragmented landscapes result in a lower total number of individuals and a lower percentage of occupied sites by individuals, particularly when species have limited dispersal abilities. Furthermore, we have found that intermediate levels of fragmentation can stimulate greater species richness, while higher levels of speciation and extinction events tend to occur under higher fragmentations. Our results also show a non-monotonic dependence of richness on dispersal, supporting the intermediate dispersal hypothesis as promotor of diversification, demonstrating the synergistic effects of landscape configuration and species dispersal ability in the processes of speciation, extinction, and diversification. This impact of fragmentation poses a real challenge for biodiversity in the context of a dynamic world.

Biogeographical and biodiversity patterns of planktonic microeukaryotes along the tropical western to eastern Pacific Ocean transect revealed by metabarcoding.

Microeukaryotic plankton (0.2-200 µm), which are morphologically and genetically highly diverse, play a crucial role in ocean productivity and carbon consumption. The Pacific Ocean (PO), one of the world's largest oligotrophic regions, remains largely unexplored in terms of the biogeography and biodiversity of microeukaryotes based on large-scale sampling. We investigated the horizontal distribution of microeukaryotes along a 16,000 km transect from the west to the east of the PO. The alpha diversity indices showed a distinct decreasing trend from west to east, which was highly correlated with water temperature. The microeukaryotic community, which was clustered into the western, central, and eastern PO groups, displayed a significant distance-decay relationship. Syndiniales, a lineage of parasitic dinoflagellates, was ubiquitously distributed along the transect and dominated the community in terms of both sequence and zero-radius operational taxonomic unit (ZOTU) proportions. The prevailing dominance of Syndiniales-affiliated ZOTUs and their close associations with dinoflagellates, diatoms, and radiolarians, as revealed by SparCC correlation analysis, suggested that parasitism may be an important trophic strategy in the surface waters of the PO. Geographical distance and temperature were the most important environmental factors that significantly correlated with community structure. Overall, our study sheds more light on the distribution pattern of both alpha and beta diversities of microeukaryotic communities and highlighted the importance of parasitisms by Syndiniales across the tropical PO.IMPORTANCEUnderstanding the biogeographical and biodiversity patterns of microeukaryotic communities is essential to comprehending their roles in biogeochemical cycling. In this study, planktonic microeukaryotes were collected along a west-to-east Pacific Ocean transect (ca. 16,000 km). Our study revealed that the alpha diversity indices were highly correlated with water temperature, and the microeukaryotic communities displayed a distinct geographical distance-driven pattern. The predominance of the parasitic dinoflagellate lineage Syndiniales and their close relationship with other microeukaryotic groups suggest that parasitism may be a crucial survival strategy for microeukaryotes in the surface waters of the Pacific Ocean. Our findings expand our understanding of the biodiversity and biogeographical pattern of microeukaryotes and highlight the significance of parasitic Syndiniales in the surface ocean.

Diversity and growth patterns of woody species in the Mediterranean Coastal range of Chile: A case study in Altos de Cantillana

Background: The Altos de Cantillana mountain range (ACMR) in central Chile is composed of different vegetation communities, and is currently a priority site for conservation, due to its high endemism, high anthropogenic pressure and vulnerability to climate change. Research on biodiversity and carbon stocks in ACMR is essential to comprehend the resilience of these forests and to define conservation strategies. This study examines the spatial variability of biodiversity and tree biomass patterns along the entire altitudinal gradient of the ACMR. Methods: Six tree species communities were studied in Altos de Cantillana Nature Sanctuary, along an altitudinal gradient ranging from 415 to 2010 m. Woody species regeneration and inventory plots, as well as dendrochronological sampling in ~150 trees were carried out. Diversity patterns were analyzed using the Jaccard index and alpha index. Growth patterns of dominant trees species were analyzed by ring-width and trunk biomass chronologies, focusing on the recent megadrought period since 2010. Results: The forest inventory revealed a notable decline in alfa diversity patterns with increasing elevation. The moist sclerophyllous forest exhibited the highest diversity. However, we did not find a pattern between elevation and diversity (and abundance) at the seed regeneration inventory level. Additionally, we identified three clusters of woody species similarity: (i) sclerophyllous, shrubs and hygrophilous forest (<1,000 m.a.s.l.); (ii) high-elevation sclerophyllous forest (>1,500 m.a.s.l); and (iii) deciduous forests (~ 2,000 m.a.s.l). Furthermore, declining growth rates were observed in all communities studied beginning in the 1980s, with even a stronger reduction in radial growth (35% on average) and biomass accumulation (56% on average) when comparing the megadrought with six decades earlier. Conclusions: We concluded that there is a negative correlation between woody species diversity and elevation. However, there are no altitudinal patterns in seedling regeneration diversity and abundance, which puts the natural succession in ACMR at risk. Additionally, we have determined that the accumulation of trunk biomass in dominant woody species has been significantly impacted by the recent megadrought period. This has affected the sink capacity of forest communities in ACMR. Therefore, our findings can significantly contribute to more efficient and timely decision-making processes regarding the conservation and restoration of this globally unique ecosystem.

Existing levels of biodiversity and river location may determine changes from small hydropower developments

Global ecosystems are facing anthropogenic threats that affect their ecological functions and biodiversity. However, we still lack an understanding of how biodiversity can mediate the responses of ecosystems or communities to human disturbance across spatial gradients. Here, we examined how existing, spatial patterns of biodiversity influence the ecological effects of small hydropower plants (SHPs) on macroinvertebrates in river ecosystems. This study found that levels of biodiversity (e.g., number of species) can influence the degrees of its alterations by SHPs occurring along elevational gradients. The results of the study reveal that the construction of SHPs has various effects on biodiversity. For example, low-altitude areas with low biodiversity (species richness less than 12) showed a small increase in biodiversity compared to high-altitude areas (species richness more than 12) under SHP disturbances. The increases in the effective habitat area of the river segment could be a driver of the enhanced biodiversity in response to SHP effects. Changes in the numerically dominant species contributed to the overall level of community variation from disturbances. Location-specific strategies may mitigate the effects of SHPs and perhaps other disturbances.

Shifting mammal communities and declining species richness along an elevational gradient on Mount Kenya.

Conservation areas encompassing elevation gradients are biodiversity hotspots because they contain a wide range of habitat types in a relatively small space. Studies of biodiversity patterns along elevation gradients, mostly on small mammal or bird species, have documented a peak in diversity at mid elevations. Here, we report on a field study of medium and large mammals to examine the impact of elevation, habitat type, and gross primary productivity on community structure. Species richness was observed using a camera trap transect with 219 sites situated across different habitat types from 2329 to 4657 m above the sea level on the western slope of Mt Kenya, the second highest mountain in Africa. We found that the lowest elevation natural habitats had the highest species richness and relative abundance and that both metrics decreased steadily as elevation increased, paralleling changes in gross primary productivity, and supporting the energy richness hypothesis. We found no evidence for the mid-domain effect on species diversity. The lowest elevation degraded Agro-Forestry lands adjacent to the National Park had high activity of domestic animals and reduced diversity and abundance of native species. The biggest difference in community structure was between protected and unprotected areas, followed by more subtle stepwise differences between habitats at different elevations. Large carnivore species remained relatively consistent but dominant herbivore species shifted along the elevation gradient. There was some habitat specialization and turnover in species, such that the elevation gradient predicts a high diversity of species, demonstrating the high conservation return for protecting mountain ecosystems for biodiversity conservation.

Biodiversity dimensions of fish communities inhabiting coastal muddy bottoms in the Tropical South Atlantic

This study provides insights into the intricate dynamics of coastal muddy bottoms within tropical regions spanning from the Amazon to the São Francisco River estuary. Through species analysis, distinct species pools distributed across the Tropical South Atlantic have been identified, revealing diverse patterns in fish biodiversity that transcend mere species richness and abundance, extending to their functional composition. More precisely, significant variations in taxonomic composition among the studied areas were observed, with differences in species composition and the presence of exclusive species contributing to the rise of unique patterns in functional diversity, partly attributed to differences in biogeographical provinces. Moreover, local processes such as salinization and estuarization also play crucial roles in shaping the taxonomic and functional diversity patterns within coastal muddy bottoms. By acknowledging the distinctive characteristics and ecological significance of these habitats, we can ensure the preservation of fish communities and uphold their crucial roles as vital nursery and fishing grounds.

Testing the Resilience, Physiological Plasticity and Mechanisms Underlying Upper Temperature Limits of Antarctic Marine Ectotherms.

Antarctic marine ectotherms live in the constant cold and are characterised by limited resilience to elevated temperature. Here we tested three of the central paradigms underlying this resilience. Firstly, we assessed the ability of eight species, from seven classes representing a range of functional groups, to survive, for 100 to 303 days, at temperatures 0 to 4 °C above previously calculated long-term temperature limits. Survivors were then tested for acclimation responses to acute warming and acclimatisation, in the field, was tested in the seastar Odontaster validus collected in different years, seasons and locations within Antarctica. Finally, we tested the importance of oxygen limitation in controlling upper thermal limits. We found that four of 11 species studied were able to survive for more than 245 days (245-303 days) at higher than previously recorded temperatures, between 6 and 10 °C. Only survivors of the anemone Urticinopsis antarctica did not acclimate CTmax and there was no evidence of acclimatisation in O. validus. We found species-specific effects of mild hyperoxia (30% oxygen) on survival duration, which was extended (two species), not changed (four species) or reduced (one species), re-enforcing that oxygen limitation is not universal in dictating thermal survival thresholds. Thermal sensitivity is clearly the product of multiple ecological and physiological capacities, and this diversity of response needs further investigation and interpretation to improve our ability to predict future patterns of biodiversity.

EDNA metabarcoding reveals biodiversity and depth stratification patterns of dinoflagellate assemblages within the epipelagic zone of the western Coral Sea

BackgroundDinoflagellates play critical roles in the functioning of marine ecosystems but also may pose a hazard to human and ecosystem health by causing harmful algal blooms (HABs). The Coral Sea is a biodiversity hotspot, but its dinoflagellate assemblages in pelagic waters have not been studied by modern sequencing methods. We used metabarcoding of the 18 S rRNA V4 amplicon to assess the diversity and structure of dinoflagellate assemblages throughout the water column to a depth of 150 m at three stations in the Western Coral Sea. Additionally, at one station we compared metabarcoding with morphological methods to optimise identification and detection of dinoflagellates.ResultsStratification of dinoflagellate assemblages was evident in depth-specific relative abundances of taxonomic groups; the greatest difference was between the 5–30 m assemblages and the 130–150 m assemblages. The relative abundance of Dinophyceae (photosynthetic and heterotrophic) decreased with increasing depth, whereas that of Syndiniales (parasitic) increased with increasing depth. The composition of major taxonomic groups was similar among stations. Taxonomic richness and diversity of amplicon sequence variants (ASVs) were similar among depths and stations; however, the abundance of dominant taxa was highest within 0–30 m, and the abundance of rare taxa was highest within 130–150 m, indicating adaptations to specific depth strata. The number of unclassified ASVs at the family and species levels was very high, particularly for Syndinian representatives.ConclusionsDinoflagellate assemblages in open water of the Coral Sea are highly diverse and taxonomically stratified by depth; patterns of relative abundance along the depth gradient reflect environmental factors and ecological processes. Metabarcoding detects more species richness than does traditional microscopical methods of sample analysis, yet the methods are complementary, with morphological analysis revealing additional richness. The large number of unclassified dinoflagellate-ASVs indicates a need for improved taxonomic reference databases and suggests presence of dinoflagellate-crypto and–morphospecies.

Biodiversity and distribution patterns of blooming jellyfish in the Bohai Sea revealed by eDNA metabarcoding

BackgroundThe mass occurrence of scyphozoan jellyfish severely affects marine ecosystems and coastal economies, and the study of blooming jellyfish population dynamics has emerged in response. However, traditional ecological survey methods required for such research have difficulties in detecting cryptic life stages and surveying population dynamics owing to high spatiotemporal variations in their occurrence. The environmental DNA (eDNA) technique is an effective tool for overcoming these limitations.ResultsIn this study, we investigated the biodiversity and spatial distribution characteristics of blooming jellyfish in the Bohai Sea of China using an eDNA metabarcoding approach, which covered the surface, middle, and bottom seawater layers, and sediments. Six jellyfish taxa were identified, of which Aurelia coerulea, Nemopilema nomurai, and Cyanea nozakii were the most dominant. These three blooming jellyfish presented a marked vertical distribution pattern in the offshore regions. A. coerulea was mainly distributed in the surface layer, whereas C. nozakii and N. nomurai showed a upper-middle and middle-bottom aggregation, respectively. Horizontally, A. coerulea and C. nozakii were more abundant in the inshore regions, whereas N. nomurai was mainly distributed offshore. Spearman’s correlation analysis revealed a strong correlation between the eDNA of the three dominant blooming jellyfish species and temperature, salinity, and nutrients.ConclusionsOur study confirms the applicability of the eDNA approach to both biodiverstiy evaluation of blooming jellyfish and investigating their spatial distribution, and it can be used as a supplementary tool to traditional survey methods.

Setting an Environmental Baseline for the Deep-Sea Slope Offshore Northwestern Cuba (Southeastern Gulf of Mexico) Using Sediments and Nematode Diversity

Deep-sea offshore northwestern Cuba is the less studied zone of the Gulf of Mexico (GoM). Our study aimed to set an environmental baseline and investigate a potential west-east gradient of sediment properties and nematode diversity along the northwestern Cuba. Sediments were collected by multicorer at nine sites in the insular slope between 974 and 1682 m depth. Sediment texture and composition showed a west-east gradient caused likely by narrowing of shelf width and increasing of downslope transport of terrigenous material. We found clear signatures of heavy metal pollution likely derived from Havana City but also from open-sky mining (Castellanos mining complex) and port dredging operations (Mariel). Nematode assemblages were dominated by the deep-sea genera: Acantholaimus, Metadasynemella, Desmodorella, Cervonema, Daptonema, Halalaimus, and Pselionema. α-diversity was about 20–50 genera and γ-diversity of about 100 genera. The β-diversity was substantial likely because small-scale patchiness of resources and heavy metals stress that increased assemblage variability. Individual weight decreased with depth indicating food-supply limitation in the deep sea; also, heavy metals were negatively correlated with weight suggesting deleterious effects on the growing. Our findings indicate that heavy metal pollution has reached deep-sea sediments and corroborate the long-range effects of anthropogenic activities on deep sea. Taxonomic diversity and biological traits (life strategy and trophic composition) constituted a powerful bioindicator of benthic health and benchmark for future potential disturbances in the region. Northwestern Cuba slope is still an understudied portion of the GoM and more research is needed to fully understand its biodiversity and biogeochemical patterns.

Both local stability and dispersal contribute to metacommunity sensitivity to asynchronous habitat availability

The stability of isolated communities depends on the complexity of their foodwebs. However, it remains unclear how local stability interacts with dispersal in multitrophic metacommunities to shape biodiversity patterns. This lack of understanding is deeper in the more realistic frame of landscapes that exhibit non-trivial and time-varying structures. Therefore, in this study, we aim to evaluate the influence of local stabilizing factors versus dispersal in determining the sensitivity of metacommunity biodiversity to increasing asynchrony of site availability. Additionally, we assess the role of foodweb complexity and landscape structure as modulating factors. To accomplish our goals we developed a model based on random matrices for local communities, which are linked by stochastic dispersal over explicit dynamic landscapes. We ran numerical simulations and computed the effect sizes of foodweb temperature, self-limitation, dispersal ability, and all pairwise combinations, on the sensitivity of biodiversity to landscape asynchrony. In our experiments we explored gradients of species richness, foodweb connectance, number of sites, and landscape modularity. Our results showed that asynchrony among site availability periods reduced α\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$\\alpha$$\\end{document}-diversity and increased β\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$\\beta$$\\end{document}-diversity. Asynchrony increased γ\\documentclass[12pt]{minimal} \\usepackage{amsmath} \\usepackage{wasysym} \\usepackage{amsfonts} \\usepackage{amssymb} \\usepackage{amsbsy} \\usepackage{mathrsfs} \\usepackage{upgreek} \\setlength{\\oddsidemargin}{-69pt} \\begin{document}$$\\gamma$$\\end{document}-diversity at high dispersal rates. Both local and regional stabilizing factors determined the sensitivity of metacommunities to landscape asynchrony. Local factors were more influential in landscapes with fewer sites and lower modularity, as well as in metacommunities composed of complex foodwebs. This research offers insights into the dynamics of metacommunities in dynamic landscapes, providing valuable knowledge about the interplay between local and regional factors in shaping ecological stability and species persistence.

Biodiversity patterns of macrofauna associated with Halodule wrightii (Ascherson) in meadows of north-eastern Brazil

Context Seagrass meadows are highly productive habitats with a vast species diversity that perform multiple ecosystem services. The fauna associated with these environments is responsible for many of the ecosystem services. Therefore, the fauna composition and functional characteristics should be considered in studies addressing seagrass meadows. Aims This study aimed to evaluate the differences in the taxonomic and functional compositions of the macrofauna associated with Halodule wrightii (Ascherson) meadows subject to different settings of habitat characteristics in the shallow coastal regions of the north-eastern coast of Brazil. Methods We used the Hill diversity series to estimate taxonomic diversity, whereas functional diversity was estimated through biological-trait analyses. Key results Distinct patterns of taxonomic and functional diversities were observed among meadows. However, the composition of functional traits diverged more. Lower taxonomic and functional diversity were observed in the Suape meadows, with values mainly related to the low organic matter content. Catuama meadows presented opposite results, associated with higher organic matter and plant density. Conclusions The meadow heterogeneity can influence the associated macrofauna and its functional characteristics. Implications These results are highly relevant for predicting the consequences of changes in seagrass meadows and how this affects the functioning of these ecosystems.

Eco-evolutionary evidence for the global diversity pattern of Cycas (Cycadaceae).

The evolution of the latitudinal diversity gradient (LDG), characterized by a peak in diversity toward the tropics, has captured significant attention in evolutionary biology and ecology. However, the inverse LDG (i-LDG) mechanism, wherein species richness increases toward the poles, remains inadequately explored. Cycads are among one of the oldest lineages of extant seed plants and have undergone extensive diversification in the tropics. Intriguingly, the extant cycad abundance exhibits an i-LDG pattern, and the underlying causes for this phenomenon remain largely elusive. Here, using 1,843 nuclear genes from a nearly complete sampling, we conducted comprehensive phylogenomic analyses to establish a robust species-level phylogeny for Cycas, the largest genus within cycads. We then reconstructed the spatial-temporal dynamics and integrated global environmental data to evaluate the roles of species ages, diversification rates, contemporary environment, and conservatism to ancestral niches in shaping the i-LDG pattern. We found Cycas experienced decreased diversification rates, coupled with the cooling temperature since its origin in the Eocene from continental Asia. Different regions have distinctively contributed to the formation of i-LDG for Cycas, with the northern hemisphere acting as evolutionary museums and the southern hemisphere serving as cradles. Moreover, water-related climate variables, specifically precipitation seasonality and potential evapotranspiration, were identified as paramount factors constraining Cycas species richness in the rainforest biome near the equator. Notably, the adherence to ancestral monsoonal climates emerges as a critical factor in sustaining the diversity pattern. This study underscores the imperative of integrating both evolutionary and ecological approaches to comprehensively unravel the mechanisms underpinning global biodiversity patterns.

Plastid phylogenomics provides new insights into the systematics, diversification, and biogeography of Cymbidium (Orchidaceae)

Cymbidium (Orchidaceae: Epidendroideae), with around 60 species, is widely-distributed across Southeast Asia, providing a nice system for studying the processes that underlie patterns of biodiversity in the region. However, phylogenetic relationships of Cymbidium have not been well resolved, hampering investigations of species diversification and the biogeographical history of this genus. In this study, we construct a plastome phylogeny of 56 Cymbidium species, with four well-resolved major clades, which provides a framework for biogeographical and diversification rate analyses. Molecular dating and biogeographical analyses show that Cymbidium likely originated in the region spanning northern Indo-Burma to the eastern Himalayas during the early Miocene (∼21.10 Ma). It then rapidly diversified into four major clades in East Asia within approximately a million years during the middle Miocene. Cymbidium spp. migration to the adjacent regions (Borneo, Philippines, and Sulawesi) primarily occurred during the Pliocene-Pleistocene period. Our analyses indicate that the net diversification rate of Cymbidium has decreased since its origin, and is positively associated with changes in temperature and monsoon intensity. Favorable hydrothermal conditions brought by monsoon intensification in the early Miocene possibly contributed to the initial rapid diversification, after which the net diversification rate was reduced with the cooling climate after the middle Miocene. The transition from epiphytic to terrestrial habits may have enabled adaptation to cooler environments and colonization of northern niches, yet without a significant effect on diversification rates. This study provides new insights into how monsoon activity and temperature changes affected the diversification dynamics of plants in Southeast Asia.

Bayesian analysis of biodiversity patterns via beam trawl versus video transect—a comparative case study of Svalbard rhodolith beds

Knowledge of spatial biodiversity patterns is important for ecosystem assessment. Rhodoliths, free-living calcareous algae, are biotic components that structure the sea floor through their complex calcareous skeletons and their tendency to accumulate in an area to form rhodolith beds. Thereby, rhodoliths are considered to act as ecosystem engineers promoting local biodiversity. In this study, the biodiversity of rhodolith beds in Mosselbukta, Svalbard, was investigated to analyse the proposed link between local biodiversity and the presence of rhodoliths by evaluating beam trawl and underwater video transect data. The comparative analysis of two sampling methods addressing the same research question allowed us to assess the suitability of these two methods. To test our hypothesis and the utility of the two methods, evaluations of the two data sets were carried out separately by using Bayesian statistics. The results confirm a positive relationship between the presence of rhodoliths and local biodiversity with a posterior probability of 70% for the video transects and 85% for the beam trawl data. The similarity of the results of the two methods suggests that both methods are well-suited for the analysis of local biodiversity patterns. The combination of the two methods, with their individual strengths and weaknesses, has provided stronger support for the results and a broader view on different components of the biodiversity in the Svalbard rhodolith beds.

Mosses and vascular plants show diverging diversity patterns along a latitudinal gradient in boreal bogs and fens

AbstractQuestionsThe latitudinal biodiversity gradient; i.e., the increase in biodiversity towards the equator, is one of the most prominent biodiversity patterns. Nevertheless, many questions remain to be answered about the influence of multiple environmental factors on the latitudinal biodiversity gradient, especially for mosses, and the functional diversity of mosses and vascular plants. This study aims at evaluating the influence of latitude, climate, environmental variables, and habitat types (bog vs fen) on taxonomic and functional diversity (α‐diversity and β‐diversity) and the composition of vascular plant and moss species.Location49° N to 55° N in Northwestern Quebec, Canada.TaxonMosses, vascular plants.MethodsWe used a database containing 376 phytosociological plots (400 m2) sampled in boreal peatlands located along a 600‐km latitudinal gradient. We evaluated changes in α‐diversity and β‐diversity in response to latitude, longitude, climate, and local abiotic variables for both taxonomic groups using linear mixed effect models. We evaluated the effects of these variables on taxonomic and functional composition using variance partitioning by redundancy analysis.ResultsMoss diversity increased with latitude, although the effects were masked by environmental variables, whereas vascular plant diversity decreased with latitude in fens and did not vary with latitude in bogs. We observed a decrease in taxonomic and functional uniqueness with latitude. Moss and vascular plant taxonomic and functional composition were primarily structured by contrasting local conditions in bogs and fens, whereas climatic variations along the latitudinal gradient played a secondary role.ConclusionsOur results highlight the contrasting biodiversity patterns in both peatland types and the importance of local habitat conditions in structuring vascular plant and moss diversity. These patterns varied depending on the diversity indicator used, as α‐ and β‐diversity and functional and taxonomic diversity were often decoupled. Future studies should therefore include more than one diversity indicator and consider the differences between ecosystems and taxon groups.

Bacterial rarity in a subarctic stream network: Biodiversity patterns, assembly mechanisms and types of rarity.

Dendritic stream networks are an intriguing subject for exploring the spatial and temporal variability of the rare and common bacterial biosphere, yet very few such studies have been conducted. We sampled riverine bacterioplankton at 13 sites in a subarctic riverine network across 3 years, with five sampling times each year. Ordinations showed a consistent pattern of downstream shift for both rare and abundant subcommunities. We also detected a temporal signal, with seasonal community shifts reflecting changes in water temperature and groundwater contribution, and an inter-annual pattern where the year 2018 differed from other years. Phylogenetic turnover of the rare subcommunity indicated homogeneous selection, whereas the abundant subcommunity was mainly stochastically structured. Transiently rare taxa were the dominant type of rarity with the highest proportion at the headwater regions. The bacterioplankton community was characterized by a small group of core taxa that occurred at most sites with little temporal variation, a very large number of permanently or transiently rare taxa, and taxa shifting through time between the rare and abundant biosphere. While this basic structure could have been detected with less extensive temporal replication, a comprehensive understanding of the rare biosphere in riverine bacterioplankton can only be achieved via inter-annual, spatially replicated sampling that covers the whole stream network.

Woody plant taxonomic, functional, and phylogenetic diversity decrease along elevational gradients in Andean tropical montane forests: Environmental filtering and arrival of temperate taxa

Mountains are paramount for exploring biodiversity patterns due to the mosaic of topographies and climates encompassed over short distances. Biodiversity research has traditionally focused on taxonomic diversity when investigating changes along elevational gradients, but other facets should be considered. For first time, we simultaneously assessed elevational trends in taxonomic, functional, and phylogenetic diversity of woody plants in Andean tropical montane forests and explored their underlying ecological and evolutionary causes. This investigation covered four transects (traversing ca. 2200 m a.s.l.) encompassing 114 plots of 0.1 ha across a broad latitudinal range (ca. 10°). Using Hill numbers to quantify abundance-based diversity among 37,869 individuals we observed a consistent decrease in taxonomic, functional, and phylogenetic diversity as elevation increased, although the decrease was less pronounced for higher Hill orders. The exception was a slight increase in phylogenetic diversity when dominant species were over-weighted. The decrease in taxonomic and functional diversity might be attributed to an environmental filtering process towards highlands, where the increasingly harsher conditions exclude species and functional strategies. Besides, the differences in steepness decrease between Hill orders suggest that rare species disproportionately contribute to functional diversity. For phylogenetic diversity the shifting elevational trend between Hill orders indicates a greater than previously considered influence in central Andean highlands of tropical lowlands originated species with strong niche conservatism relative to distantly related temperate lineages. This could be explained by a decreasing presence and abundance of temperate, extratropical taxa towards the central Andes relative to northern or southern Andes, where they are more prevalent.

Acoustic indices are responsive to local-scale but not landscape-scale agricultural land use

Agricultural land use shapes biodiversity patterns. In the literature, land use and land cover at both local and landscape scales has been shown to be important to understanding variation in biodiversity in agricultural systems including measures of occupancy, abundance, and diversity, with landscape scale processes moderating local patterns. The relative role of these processes in explaining variation in acoustic indices, an increasingly frequent measure of biological and environmental change, remains unknown. To address this gap, we recorded acoustic data by passive sampling for two months across 39 farms in central Kansas, USA with automated recording units. We used these data to calculate eight different acoustic indices. We found that acoustic indices were associated with local land use composition (within 100 m) but not landscape composition (within 1000 m). These data suggest that passive acoustic monitoring may be used explain how local land use shapes the soundscape and perhaps biodiversity, but future research should seek to understand the lack of response to landscape variation.

Recolonization of secondary forests by a locally extinct Caribbean anole through the lens of range expansion theory.

Disturbance and recovery dynamics are characteristic features of many ecosystems. Disturbance dynamics are widely studied in ecology and conservation biology. Still, we know less about the ecological processes that drive ecosystem recovery. The ecological processes that mediate ecosystem recovery stand at the intersection of many theoretical frameworks. Range expansion theory is one of these complementary frameworks that can provide unique insights into the population-level processes that mediate ecosystem recovery, particularly fauna recolonization. Although the biodiversity patterns that follow the fauna recolonization of recovering forests have been well described in the literature, the ecological processes at the population level that drive these patterns remain conspicuously unknown. In this study, we tested three fundamental predictions of range expansion theory during the recolonization of recovering forests in Puerto Rico by a shade specialist anole, Anolis gundlachi. Range expansion theory predicts that individuals at the early stages of recolonization (i.e., younger forests) would have a high prevalence of dispersive traits, experience less density dependence, and suffer less parasitism. To test these predictions, we conducted a chronosequence study applying space-for-time substitution where we compared phenotypic traits (i.e., body size, body condition, and relative limb size), population density, population growth rates, and Plasmodium parasitism rates among lizard populations living in young (<30 years), mid (~40-70 years), and old-growth forests (>75 years). Lizard populations in younger forests had lower densities, higher population growth rates, and lower rates of Plasmodium parasitism compared with old-growth forests. Still, while we found that individuals had larger body sizes, and longer forelimbs in young forests in one site, this result was not consistent among sites. This suggests a potential trade-off between the traits that provide a dispersal advantage during the initial stages of recolonization and those that are advantageous to establish in novel environmental conditions. Overall, our study emphasizes the suitability of range expansion theory to describe fauna recolonization but also highlights that the ecological processes that drive recolonization are time-dependent, complex, and nuanced.