Water quality monitoring reveals changing trends in the environmental condition of aquatic systems, elucidates the prevailing factors impacting a water body, and facilitates science-backed policymaking. A 2020 hiatus in water quality data tracking in the Lower Passaic River (LPR), New Jersey, has created a 5-year information gap. To gain insight into the LPR water quality status during this lag period and ahead, water quality indices computed with 16-year historical data available for 12 physical, chemical, nutrient, and microbiological parameters were used to predict water quality between 2020 and 2025 using seasonal autoregressive moving average (ARIMA) models. Average water quality ranged from good to very poor (34 ≤ µWQI ≤ 95), with noticeable spatial and seasonal variations detected in the historical and predicted data. Pollution source tracking with the positive matrix factorization (PMF) model yielded significant R2 values (0.9 < R2 ≤ 1) for the input parameters and revealed four major LPR pollution factors, i.e., combined sewer systems, surface runoff, tide-influenced sediment resuspension, and industrial wastewater with pollution contribution rates of 23-30.2% in the upstream and downstream study areas. Significant correlation of toxic metals, nutrients, and sewage indicators suggest similarities in their sources.