The present study reports on the variability of atmospheric carbon dioxide (CO2) and methane (CH4) concentrations over Antarctica using data collected during the 2015–2016 and 2016–2017 as part of the Indian Scientific Expedition to Antarctica (ISEA). During the austral summer (January–March), this study examined the spatio-temporal variability in atmospheric CO2 and CH4 concentrations at the Indian Antarctic Stations (IAS). An average atmospheric CO2 concentration was observed to be 396.25 ± 4.20 ppm at Bharati station during 2015-16 austral summer period, whereas CO2 (CH4) concentrations were 398.7 ± 0.46 ppm (1780 ± 2 ppb) and 399.1 ± 0.41 ppm (1780 ± 3 ppb) at Bharati and Maitri stations, respectively during 2016–17. During the study period, the Orbiting Carbon Observatory-2 (OCO-2) based column averaged CO2 concentration shows similar values against records. At Bharati and Maitri, the diurnal amplitudes of CO2 (CH4) are varied from 0.11 ppm (0.37 ppb) to 8.90 ppm (11.44 ppb) and 0.54 ppm (1.96 ppb) to 7.30 ppm (16 ppb), respectively. In the austral summer, dominant winds at the IAS are from the east, northeast, and southeast.