Many aerodynamic shape optimization methods often focus on utilizing the end-to-end relationship between design variables and aerodynamic performance to find the optimal design, while overlooking the exploration of geometric knowledge of the shape itself. To fully use geometric knowledge to improve optimization efficiency, this paper proposes an efficient method by exploring the potential correlation between geometric features and aerodynamic performance at a low cost. We use unsupervised isometric feature mapping in manifold learning to capture geometric features that can distinguish the aerodynamic performance of different airfoils without embedding any tags. Then a filter criterion is establish based on the geometric features. During the optimization process, airfoils that deliver poor aerodynamic performance can be filtered out with a high probability before being precisely evaluated through computational fluid dynamics simulations. This helps improve samples quality to enhance the optimization efficiency. We applied the proposed method to the unconstrained and constrained optimizations of the Royal Aircraft Establishment (RAE) 2822 airfoil to validate its performance. The results demonstrate that the proposed method can improve the efficiency of optimization by over 50% compared with the original evolutionary optimization algorithm. It performs well across various optimization problems, demonstrating high engineering practical value.