This paper aims to achieve collision-free formation tracking for multiple hypersonic flight vehicles without introducing conventional approximators such as fuzzy logic systems and neural networks. By relying on the hierarchical control theory, a globally fixed-time distributed formation control protocol with guaranteed tracking behaviors is proposed. Firstly, for the purpose of deriving the virtual control commands in the three-dimensional translational dynamics, a fixed-time consensus control input is presented. Then, by designing a comprehensive performance-preserving feedback control law, the actual control commands are derived, so that the virtual control inputs can be tracked timely and accurately. Meanwhile, with resort to a novel exponential-type artificial potential function, a collision-free control input is proposed to avoid close proximity between adjacent hypersonic flight vehicles. Summarily, the outstanding advantage of the proposed protocol is that it simultaneously realize the collision-free formation tracking, fixed-time stability and performance-preserving control for multiple hypersonic flight vehicles with uncertain dynamics. Lyapunov stability criterion verifies the closed-loop stability, showing that the error signals can attenuate to a tiny region around the origin within a user-specified time. Finally, comparative numerical simulations are performed to further demonstrate the theoretical results.