Abundance Of Microbial Communities Research Articles

Subtle microbial community changes despite rapid glyphosate degradation in microcosms with four German agricultural soils

Glyphosate is the world's most widely applied herbicide. Despite its extensive and heavy use in agriculture and forestry, the microbial key players involved in glyphosate breakdown and the impact of this compound on the soil microbiota including fungi is not fully understood. Here, we used microcosm experiments to determine the impact of glyphosate application on the microbial community structure and abundance of four different agricultural soils from the Ammer valley, Germany, with a history of glyphosate application. We identified putative glyphosate degraders that could be active under in-situ conditions. Glyphosate was applied to the soils in a single dose of 15 mg·kg−1, which were incubated in the dark with 60 % water-filled pore space at 20 °C for 56 days. Soil samples were taken on the day of glyphosate addition (day 0) and after 7, 28 and 56 days. Capillary electrophoresis-mass spectrometry was used to quantify glyphosate and its major transformation product aminomethylphosphonic acid. Changes in the microbial community structure and abundance were evaluated using 16S rRNA gene or internal transcribed spacer region amplicon sequencing and qPCR. Our findings demonstrate that glyphosate was rapidly degraded in the four soils, with 60–85 % of the applied glyphosate disappearing within 7 days. However, the observed impact of glyphosate application on the microbial community composition was minimal and, notably, there was no significant time-dependent glyphosate effect at 7 days across all four soils. This suggests that glyphosate degradation in soil might be a concerted effort by a wide microbial network or it might be occurring co-metabolically. In addition, the sorption/desorption dynamics of glyphosate with the soil matrix can heavily influence its bioavailability, further reasoning the subtle effects observed on the microbial community structure.

Soil carbon dynamics in drained prairie pothole wetlands

Drainage leads to trade-offs between crop production efficiency and wetland conservation, with complex impacts on ecosystem services. In North America’s Prairie Pothole Region, wetland drainage is widespread, often to increase the available land for cultivation, prevent crop loss due to flooding, and manage soil salinity. Wetlands are known for providing key ecosystem services such as improved water quality, flood mitigation, and carbon storage. There is limited research on how changes to soil hydrology and soil redistribution through wetland drainage can impact soil carbon storage and persistence in this region. This research evaluates factors that contribute to soil carbon storage in drained prairie pothole wetland based on 33 drained wetlands in Saskatchewan, Canada. These analyses showed regional differences in the response of soil carbon storage to drainage that are driven by environmental factors such as annual precipitation, temperature, and wetland permanence. We observed increasing soil carbon storage from the Dark Brown to Black soil zones, as well as with longer wetland pond permanence. The sampling depth used for calculating soil carbon storage was especially important when comparing geographically across the soil zones as the Black soil zone had greater soil carbon stored at depth. Soil carbon was also intensively monitored over 2 years following installation of surface drainage across a wetland complex (8 drained wetlands) where water was partially directed to a consolidation wetland. We further assessed changes in soil carbon dynamics and protection from microbial decomposition based on three soil organic matter fractions, ATR-FTIR for organic matter functional groups, and phospholipid fatty acid analysis to understand the microbial community abundance and structure. After 2 years following drainage, ephemeral wetlands with short pond permanence were found to be most sensitive to drainage and the only wetland class with decreases in soil carbon. The temporary and seasonal wetland classes showed no significant differences in soil carbon content but there were changes in the organic matter with depth due to soil redistribution during drainage implementation. Jointly, this research provides region-specific estimates of soil carbon storage in drained prairie pothole wetlands that can be used to inform wetland soil carbon management in cultivated fields.

Spatiotemporal Dynamics of Assyrtiko Grape Microbiota.

Vitis vinifera, an economically significant grapevine species, is known for wine, juice, and table grape production. The berries of wine grapes host a diverse range of microorganisms influencing both grapevine health and the winemaking process. Indigenous to Greece, the emblematic variety Assyrtiko, renowned for high-quality white wines, originated from Santorini and spread to various Greek regions. Despite existing studies on the microbiota of several varieties, the carposphere microbiota of Assyrtiko grapes remains unexplored. Thus, we conducted a spatiotemporal metagenomic study to identify the epiphytic microbial community composition of Assyrtiko grapes. The study was conducted in two consecutive vintage years (2019 and 2020) across three different and distinct viticulture regions in Greece (Attica, Thessaloniki, Evros). We performed amplicon sequencing, targeting the 16S rRNA gene for bacteria and the ITS region for fungi, with subsequent comprehensive bioinformatic analysis. Our data indicate that the distribution and relative abundance of the epiphytic carposphere microbial communities of the Assyrtiko variety are shaped both by vintage and biogeography.

Biocontrol mechanism of Bacillus siamensis sp. QN2MO-1 against tomato fusarium wilt disease during fruit postharvest and planting

Tomato fusarium wilt caused by Fusarium oxysporum f. sp. lycopersici (Fol) is a highly destructive disease, resulting in severe economic losses of global tomato production annually. An eco-friendly alternative to chemical fungicide using biological control agents (BCAs) is urgently needed. Here, Bacillus siamensis QN2MO-1 was isolated from Noli fruit and had a strong antagonistic activity against Fol in vitro and in vivo. Strain QN2MO-1 also exhibited a broad-spectrum antifungal activity against the selected 14 phytopathogenic fungi. The crude protein produced by strain QN2MO-1 could inhibit the spore germination of Fol and destroy the spore structure. It was closely related with the generation of chitinase and β-1,3-glucanase secreted by strain QN2MO-1. In a pot experiment, the application of B. siamensis QN2MO-1 effectively alleviated the yellowing and wilting symptoms of tomato plants. The disease index and incidence rate were decreased by 72.72% and 80.96%, respectively. The rhizospheric soil in tomato plants owed a high abundance of microbial community. Moreover, strain QN2MO-1 also enhanced the plant growth and improved the fruit quality of tomato. Therefore, B. siamensis QN2MO-1 will be explored as a potential biocontrol agent and biofertilizer.

Nano calcium carbonate improves wheat nitrogen accumulation and grain yield by enhancing soil nitrogen supply and flag leaf photosynthetic characteristics

ContextOver-application of chemical fertilizers to attain optimal crop yields has resulted in an environmental issue of global concern. To mitigate this, reducing nitrogen (N) application and enhancing fertilizer use efficiency is crucial, and nano-fertilizers offer a promising solution. However, there is a paucity of studies examining the use of nano-fertilizers in fields. ObjectivesThis study aimed to assess the impact of different dosages of nano calcium carbonate (NCC) mixed with compound fertilizer (CF) on soil N supply, enzyme activity, microbial ecology, as well as photosynthetic characteristics, N accumulation and yield of wheat plants. MethodsThe effects were examined through a soil column leaching experiment and a two-year field experiment conducted from 2020 to 2022. Five treatment groups were established, namely CK (CF), T1 (CF + 0.15% NCC), T2 (CF + 0.30% NCC), T3 (CF + 0.45% NCC), and T4 (CF + 0.60% NCC), to determine the optimal ratio of NCC to CF. ResultsAll NCC treatments resulted in reduced leaching of soluble N. Nevertheless, the 0.45% and 0.60% NCC treatments (T3 and T4) posed a risk of migration through water runoff, leading to nutrient losses. The simultaneous application of NCC and CF increased the content of soil nitrate N (NO3--N), as well as the activity levels of urease and protease during the anthesis stage. Additionally, it elevated the abundance of various microbial communities, including Actinobacteria, Acidobacteria, Chloroflexi, Cyanobacteria, and Nitrospirae. NCC application reduced the content of Na+/K+ and malondialdehyde (MDA), while elevating the activities of flag leaf superoxide dismutase (SOD), catalase (CAT), ascorbate peroxidase (APX), nitrate reductase (NR), and glutamine synthetase (GS). Additionally, it increased stomatal conductance (Gs) and net photosynthetic rate (Pn). The 0.30% NCC treatment showed significantly higher N accumulation in the stem, leaf, and spike compared to CK at the maturity stage. Moreover, 0.30% NCC treatment exhibited a significant increase in the number of grains per spike and higher yields compared to CK. In particular, 0.30% and 0.45% NCC treatments accomplished yield boosts of 29.6–34.7% and 19.9–26.0%, respectively. ConclusionNCC enhanced wheat plant N accumulation and yield through regulation of N release rate and increased soil N content, enzyme activity, and microbial community diversity and abundance. Additionally, NCC boosted flag leaf photosynthesis rate during the anthesis to maturity stage of wheat. This research highlights the potential of NCC to improve wheat crop production. And 0.30% NCC is the optimal application concentration for NCC.

Combined hydrothermal pretreatment of agricultural and forestry wastes to enhance anaerobic digestion for methane production

The dense structure and significant differences in the properties of agricultural and forestry wastes make it difficult to achieve anaerobic conversion. This study employed hydrothermal pretreatment (HTP) and combined hydrothermal pretreatment (CHTP) to enhance the anaerobic digestion (AD) performance of agricultural and forestry organic wastes. At a specific hydrothermal condition of 140℃ for 30 mins, the cumulative methane production of garden waste (GW), chicken manure (CM), duck manure (DM), and pig manure (PM) increased by 14.70%, 14.18%, 27.48%, and 21.81%, respectively. Under the same conditions, CHTP of garden waste with livestock and poultry manures showed noticeable synergistic effects, resulting in the methane production potential of garden waste mixed with chicken manure, duck manure, and pig manure increased by 28.82%, 36.59%, and 37.56%, respectively, compared with the untreated group. Metabolomic analysis showed that CHTP could significantly promote the decomposition of biomass carbohydrates, proteins, and lipids, leading to increased levels of small molecular metabolites. Analysis of microbial community diversity showed that HTP and CHTP increase the abundance of specific functional microbial communities, such as hydrolysis bacteria and methanogens, thereby promoting the anaerobic production of methane from biomass waste. Energy balance analysis shows that HTP-AD and CHTP-AD have a positive net energy benefit. This study provides an efficient CHTP technology and theoretical support for the resource utilization and energy conversion of agricultural and forestry wastes.

Adsorption, natural attenuation, and microbial community response of ofloxacin and oxolinic acid in marine sediments

The pollution of quinolone antibiotics in the marine environment has attracted widespread attention, especially for ofloxacin (OFL) and oxolinic acid (OXO) due to their frequent detection. However, few studies have been conducted to assess the behaviors and microbial community response to these antibiotics in marine sediments, particularly for potential antibiotic-resistant bacteria. In this work, the adsorption characteristics, natural attenuation characteristics, and variation of microbial communities of OFL and OXO in marine sediments were investigated. The adsorption process of antibiotics in sediments occurred on the surface and internal pores of organic matter, where OFL was more likely to be transferred from seawater to sediment compared with OXO. Besides, the adsorption of two antibiotics on sediment surfaces was attributed to physisorption (pore filling, electrostatic interaction) and chemisorption (hydrogen bonding). The natural attenuation of OFL and OXO in marine sediment followed second-order reaction kinetics with half-lives of 6.02 and 26.71 days, respectively, wherein biodegradation contributed the most to attenuation, followed by photolysis. Microbial community structure in marine sediments exposure to antibiotics varied by reducing abundance and diversity of microbial communities, as a whole displaying as an increase in the relative abundance of Firmicutes whereas a decrease of Proteobacteria. In detail, Escherichia-Shigella sp., Blautia sp., Bifidobacterium sp., and Bacillus sp. were those antibiotic-resistant bacteria with potential ability to degrade OFL, while Bacillus sp. may be resistant to OXO. Furthermore, functional predictions indicated that the microbial communities in sediment may resist the stress caused by OFL and OXO through cyano-amino acid metabolism, and ascorbate and aldarate metabolism, respectively. The research is key to understanding fate and bacterial resistance of antibiotics in marine sediments.

A matter of choice: Understanding the interactions between epiphytic foraminifera and their seagrass host Halophila stipulacea

In sub/tropical waters, benthic foraminifera are among the most abundant epiphytic organisms inhabiting seagrass meadows. This study explored the nature of the association between foraminifera and the tropical seagrass species H. stipulacea, aiming to determine whether these interactions are facilitative or random. For this, we performed a "choice" experiment, where foraminifera could colonize H. stipulacea plants or plastic "seagrasses" plants. At the end of the experiment, a microbiome analysis was performed to identify possible variances in the microbial community and diversity of the substrates. Results show that foraminifera prefer to colonize H. stipulacea, which had a higher abundance and diversity of foraminifera than plastic seagrass plants, which increased over time and with shoot age. Moreover, H. stipulacea leaves have higher epiphytic microbial community abundance and diversity. These results demonstrate that seagrass meadows are important hosts of the foraminifera community and suggest the potential facilitative effect of H. stipulacea on epiphytic foraminifera, which might be attributed to a greater diversity of the microbial community inhabiting H. stipulacea.

Eutrophication of seawater intensified biocorrosion of copper caused by Desulfovibrio vulgaris biofilm

Seawater eutrophication increases the abundance of microbial communities and metabolic activities of microorganisms in seawater and potentially impacts microbiologically influenced corrosion (MIC). Copper as a common material in marine structures and nuclear waste containers faces serious MIC problems. This study investigated the copper MIC caused by Desulfovibrio vulgaris in anaerobic artificial seawater (ASW) with four eutrophication levels: pure ASW (PASW), oligotrophication ASW (OASW), mesotrophication ASW (MASW), and eutrophication ASW (EASW). It was found that the copper MIC increased along with the eutrophication level. The higher eutrophication led to an increase in the planktonic and Cu surface sessile D. vulgaris cell counts and H2S concentration in the headspace of anaerobic vials. The resultant weight loss and maximum pitting depth of copper in OASW were 2.0 and 2.4 times those in PASW, while their values in EASW were 2.8 and 4.2 times after 10 d of incubation, respectively. The experimental results combined with a bioenergetic analysis in this study indicated the copper MIC caused by D. vulgaris as belonging to biogenic H2S corrosion (i.e., metabolite MIC or M-MIC), which was further confirmed by the identical cytochrome c (Cyt c) (redox-active protein for extracellular electron transfer) expression levels of the planktonic D. vulgaris cells and sessile cells on copper.

Opportunistic pathogens increased and probiotics or short-chain fatty acid-producing bacteria decreased in the intestinal microbiota of pneumonia inpatients during SARS-CoV-2 Omicron variant epidemic.

The global pandemic of COVID-19 has been over four years, and the role of intestinal microbiota in the occurrence and development of COVID-19 needs to be further clarified. During the outbreak of SARS-CoV-2 Omicron variant in China, we analyzed the intestinal microbiome in fecal samples from inpatients with pneumonia and normal individuals in January 2023. The microbiota composition, alpha diversity, beta diversity, differential microbial community, co-occurrence networks, and functional abundance were analyzed. The results showed significant differences in microbiota composition between the two groups. In pneumonia group, the abundance of Bifidobacterium, Blautia, Clostridium, and Coprococcus decreased, while the abundance of Enterococcus, Lactobacillus, and Megamonas increased. Through LEfSe analysis, 37 marker microbiota were identified in pneumonia group. Co-occurrence network analysis found that Lachnospiraceae was critical for the interaction of intestinal microbiota, and the anti-inflammatory bacteria Blautia was negatively correlated with the pro-inflammatory bacteria Ruminococcus. Functional prediction found the up-regulation of steroid biosynthesis, geraniol degradation, and mRNA surveillance pathway in pneumonia group. In conclusion, opportunistic pathogens increased and probiotics, or short-chain fatty acid-producing bacteria, decreased in the intestinal microbiota of pneumonia inpatients during the Omicron epidemic. Blautia could be used as a probiotic in the treatment of pneumonia patients in the future.

Remediation of cadmium-contaminated soil by biochar-loaded nano-zero-valent iron and its microbial community responses

At present, cadmium (Cd)-contaminated soil has been increasingly serious, which is adverse to soil health. In this study, biochar (BC) and biochar-loaded nanoscale zero-valent iron (nZVI@BC) were synthesized for remediation of Cd-contaminated soil. The effects of various factors including reaction time, dosage, nZVI loading on Cd fractionation, soil available iron, pH, CEC, and soil enzyme activity were comprehensively discussed. It can be concluded that nZVI@BC exhibited more excellent immobilization effect of Cd, and was positively correlated with dosage and reaction time, but negatively related to nZVI loading. As a result, 5% nZVI@BC(1:3) performed the best. Soil available iron, pH, and CEC were significantly enhanced with increasing nZVI loading. The immobilization mechanism was analyzed, including ion exchange, physical adsorption, surface complexation, electrostatic attraction as well as co-precipitation. Besides, nZVI@BC remarkably promoted soil catalase activity, but inhibited urease and FDA hydrolase activities. Furthermore, the effects and differences on the diversity, abundance, and species composition of soil microbial communities were deeply explored. The order of bacterial community richness in each group was CK > Cd > BC > nZVI@BC, and the bacterial community diversity was CK > nZVI@BC > Cd > BC. The greatest difference of species abundance composition was observed between nZVI@BC treatment group and the control. Additionally, forty-three biomarkers were screened, which primarily belonged to Proteobacteria, Gemmatimonadetes, Firmicutes, and Actinobacteria. This study will provide the profound theoretical basis for nZVI@BC remediation of Cd-contaminated soil and its microbial community responses.

Enhancing bioavailable carbon sources and minimizing ammonia emissions in distillery sludge and distiller's grains waste co-composting through deep eutectic solvent addition

This study introduced two deep eutectic solvents, ChCl/oxalic acid (CO) and ChCl/ethylene glycol (CE), into a 34-day co-composting process of distillery sludge and distiller's grains waste to address challenges related to NH3 emissions. The addition of DES increased dissolved organic carbon by 68% to 92%, offering more utilizable carbon for microorganisms. SYTO9/PI staining and enzyme activity tests showed the CE group had higher bacterial activity and metabolic levels during the thermophilic phase than the control. Bacterial community analysis revealed that early dominance of Lactobacillus and Lysinibacillus in CE accelerated the onset of the thermophilic phase, reduced pile pH, and significantly decreased urease production by reducing Ureibacillus. Consequently, CE treatment substantially dropped NH3 emissions by 73% and nitrogen loss by 54%. Besides, CE fostered a more abundant functional microbial community during the cooling and maturation phases, enhancing deep degradation and humification of organic matter.

High Frankia abundance and low diversity of microbial community are associated with nodulation specificity and stability of sea buckthorn root nodule.

Actinorhizal symbioses are gaining attention due to the importance of symbiotic nitrogen fixation in sustainable agriculture. Sea buckthorn (Hippophae L.) is an important actinorhizal plant, yet research on the microbial community and nitrogen cycling in its nodules is limited. In addition, the influence of environmental differences on the microbial community of sea buckthorn nodules and whether there is a single nitrogen-fixing actinomycete species in the nodules are still unknown. We investigated the diversity, community composition, network associations and nitrogen cycling pathways of the microbial communities in the root nodule (RN), nodule surface soil (NS), and bulk soil (BS) of Mongolian sea buckthorn distributed under three distinct ecological conditions in northern China using 16S rRNA gene and metagenomic sequencing. Combined with the data of environmental factors, the effects of environmental differences on different sample types were analyzed. The results showed that plants exerted a clear selective filtering effect on microbiota, resulting in a significant reduction in microbial community diversity and network complexity from BS to NS to RN. Proteobacteria was the most abundant phylum in the microbiomes of BS and NS. While RN was primarily dominated by Actinobacteria, with Frankia sp. EAN1pec serving as the most dominant species. Correlation analysis indicated that the host determined the microbial community composition in RN, independent of the ecological and geographical environmental changes of the sea buckthorn plantations. Nitrogen cycle pathway analyses showed that RN microbial community primarily functions in nitrogen fixation, and Frankia sp. EAN1pec was a major contributor to nitrogen fixation genes in RN. This study provides valuable insights into the effects of eco-geographical environment on the microbial communities of sea buckthorn RN. These findings further prove that the nodulation specificity and stability of sea buckthorn root and Frankia sp. EAN1pec may be the result of their long-term co-evolution.

Study on the impact of hydraulic loading rate (HLR) on removal of nitrogen under low C/N condition by modular moving bed constructed wetland (MMB-CW) system

Traditional constructed wetlands often exhibit low nitrogen removal efficiency when treating low C/N wastewater, prompting the need for targeted technological innovation. Modular moving bed constructed wetlands (MMB-CWs) have demonstrated superior performance, achieving over 15% higher TN removal compared to traditional subsurface flow wetlands, even without the addition of carbon, further research is required to fully understand the operational effects of different hydraulic loads and the underlying nitrogen removal mechanisms. To address this gap, the contrast performance of MMB-CWs with three different substrate addition ratios 90% (unit A), 60% (unit B), 30% (unit C) was studied under low C/N conditions and different hydraulic loading rates (HLRs). Results show that there are no significant differences in TN removal among the three systems at 250 mm/d and 500 mm/d. NH4+-N and NO3--N removal rates don't significantly decrease (p>0.05). High HLR leads to significantly lower effluent NO2--N concentrations. HLR minimally affects CODCr removal, with unit C exhibiting better resistance. Functional gene analysis reveals a minor role of nitrification, emphasizing the crucial role of anaerobic ammonium oxidation. The copy number of the Anammox gene is 1.2–4.0 times that of the NIR gene, with a larger ratio in the secondary unit, indicating that denitrification is mainly driven by Anammox. The dominant genera in the first unit are Azospira, Thauera, and Denitratisoma, while Defluviicoccus, Mycobacterium, and Nocardioides dominate the ceramsite and biochar of the second unit. The addition of biochar enhances the composition and abundance of microbial communities in the system, and as biochar addition increases, the removal rates of NH4+-N and TN gradually increase, ensuring effective denitrification under varying loads.

Selenium Fertilizer Improves Microbial Community Structure and Diversity of Rhizospheric Soil and Selenium Accumulation in Tomato Plants

ABSTRACT Selenium (Se) is an essential microelement in living organisms, and has a beneficial effect on plant growth and stress tolerance at low concentrations. Se biofortification is commonly practiced in agriculture and is considered the best method for increasing human Se uptake. This study aimed to investigate the effects of Se fertilizer application on Se accumulation and microbial communities in the rhizospheric soil of tomato plants. A pot experiment with five treatments, i.e. (a) non-Se fertilizer as control (Ck) and Se fertilizer in the form of (b) sodium selenite (1 mg kg−1), (c) sodium selenite (5 mg kg−1), (d) sodium selenate (1 mg kg−1), and (e) sodium selenate (5 mg kg−1) was set up. The results showed that Se content in the tomato plants’ parts gradually increased with an increasing concentration of sodium selenate or selenite. Sodium selenate significantly increased tomato yield and improved Se accumulation in tomato plants. Se-treated treatments decreased the abundance of soil microbial community, and had no effect on the Chao1 and Shannon indices of them. Furthermore, Se application increased the relative abundance of Acidobacteriota and Actinobacteriota involved in the decomposition of organic matter, reducing Bacteriodota and Ascomyta, and significantly affected the bacterial community structure. Thus, Se fertilizer application increased the crop yield, improved Se accumulation, and the structure and diversity of rhizospheric soil microbial community in the tomato plants. In line with our experiment, 5 mg kg−1 concentration selenate is a reasonable way to harvest Se-enriched tomatoes.

The combined effects of lanthanum-modified bentonite and Vallisneria spiralis on phosphorus, dissolved organic matter, and heavy metal(loid)s

The use of lanthanum-modified bentonite (LMB) combined with Vallisneria spiralis (V∙s) (LMB + V∙s) is a common method for controlling internal phosphorus (P) release from sediments. However, the behaviors of iron (Fe) and manganese (Mn) under LMB + V∙s treatments, as well as the associated coupling effect on P, dissolved organic matter (DOM), and heavy metal(loid)s (HMs), require further investigations. Therefore, we used in this study a microelectrode system and high-resolution dialysis technology (HR-Peeper) to study the combined effects of LMB and V∙s on P, DOM, and HMs through a 66-day incubation experiment. The LMB + V∙s treatment increased the sediment DO concentration, promoting in-situ formations of Fe (III)/Mn (IV) oxyhydroxides, which, in turn, adsorbed P, soluble tungsten (W), DOM, and HMs. The increase in the concentrations of HCl-P, amorphous and poorly crystalline (oxyhydr) oxides-bound W, and oxidizable HMs forms demonstrated the capacity of the LMB + V∙s treatment to transform mobile P, W, and other HMs forms into more stable forms. The significant positive correlations between SRP, soluble W, UV254, and soluble Fe (II)/Mn, and the increased concentrations of the oxidizable HMs forms suggested the crucial role of the Fe/Mn redox in controlling the release of SRP, DOM, and HMs from sediments. The LMB + V∙s treatment resulted in SRP, W, and DOM removal rates of 74.49, 78.58, and 54.78 %, which were higher than those observed in the control group (without LMB and V∙s applications). On the other hand, the single and combined uses of LMB and V·s influenced the relative abundances of the sediment microbial communities without exhibiting effects on microbial diversity. This study demonstrated the key role of combined LMB and V∙s applications in controlling the release of P, W, DOM, and HMs in eutrophic lakes.

Effect of long-term in-row branch covering on soil microorganisms in pear orchards.

Branches covering (BC) is a way to reuse the pruned branches and save the cost of ground cloth. This study investigated the effects of BC and ground-cloth covering on the soil microcosm environment by measuring the chemical properties and microbial communities at different soil depths for 6 years. The results revealed that BC significantly improved soil chemical properties, increased the abundance of bacterial microbial communities and the diversity and homogeneity of bacteria and fungi, while decreased the abundance of fungal microbial communities. There was a threshold value for the regulation of microbial communities by BC, which decreased the high-abundance communities (Proteobacteria, Ascomycota, etc.) and increased the low-abundance communities (Acidobacteriota, Basidiomycota, etc.). Fungi were more sensitive to BC than bacteria. The stability and homogeneity of microorganisms were stronger in the 15-25 cm soil layer. The bacterial phyla were dominated by Proteobacteria, with the top 10 phyla accounting for more than 80% of the relative abundance; the genera were dominated by MND1, with the top 10 genera accounting for about 10%. The fungal phyla were dominated by Ascomycota, with the top 10 phyla accounting for 50-90%; the genera were dominated by unidentified Pyronemataceae sp., with the top 10 genera accounting for 30-60%. The phyla that differed significantly between treatments were mainly Proteobacteria, Ascomycota, Acidobacteriota, and Basidiomycota. In addition, metabolism was the predominant function in bacteria, while Saprotroph was the predominant function in fungi. Bacteroidota correlated strongly with soil chemical properties and bacterial functions, while Chytridiomycota correlated strongly with soil chemical properties and Pathogen-Saprotroph-Symbiotroph. In conclusion, BC can improve soil nutrient content and optimize microbial community structure and function. Through initially assessing the effects of BC on soil nutrients and microorganisms in pear orchard rows, this study provides a reference for excavating key microorganisms and updating the soil row management model.

Long-term toxic effects of iron-based metal-organic framework nanopesticides on earthworm-soil microorganism interactions in the soil environment

With the widespread use of controlled-release nanopesticides in field conditions, the interactions between these nanopesticides and biological systems are complex and highly uncertain. The toxicity of iron-based metal organic frameworks (CF@MIL-101-SL) loaded with chlorfenapyr (CF) to terrestrial invertebrate earthworms in filter paper and soil environments and the potential mechanisms of interactions in the nanopesticide-earthworm-cornfield soil microorganism system were investigated for the first time. The results showed that CF@MIL-101-SL was more poisonous to earthworms in the contact filter paper test than suspension concentrate of CF (CF-SC), and conversely, CF@MIL-101-SL was less poisonous to earthworms in the soil test. In the soil environment, the CF@MIL-101-SL treatment reduced oxidative stress and the inhibition of detoxifying enzymes, and reduced tissue and cellular substructural damage in earthworms compared to the CF-SC treatment. Long-term treatment with CF@MIL-101-SL altered the composition and abundance of microbial communities with degradative functions in the earthworm intestine and soil and affected the soil nitrogen cycle by modulating the composition and abundance of nitrifying and denitrifying bacterial communities in the earthworm intestine and soil, confirming that soil microorganisms play an important role in reducing the toxicity of CF@MIL-101-SL to earthworms. In conclusion, this study provides new insights into the ecological risks of nanopesticides to soil organisms.

Molecular insights into the microbial degradation of sediment-derived DOM in a macrophyte-dominated lake under aerobic and hypoxic conditions

The mineralization of dissolved organic matter (DOM) in sediments is an important factor leading to the eutrophication of macrophyte-dominated lakes. However, the changes in the molecular characteristics of sediment-derived DOM during microbial degradation in macrophyte-dominated lakes are not well understood. In this study, the microbial degradation process of sediment-derived DOM in Lake Caohai under aerobic and hypoxic conditions was investigated using Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) and metagenomics. The results revealed that the microbial degradation of sediment-derived DOM in macrophyte-dominated lakes was more intense under aerobic conditions. The microorganisms mainly metabolized the protein-like substances in the macrophyte-dominated lakes, and the carbohydrate-active enzyme genes and protein/lipid-like degradation genes played key roles in sediment-derived DOM degradation. Organic compounds with high H/C ratios such as lipids, carbohydrates, and protein/lipid-like compounds were preferentially removed by microorganisms during microbial degradation. Meanwhile, there was an increase in the abundance of organic molecular formula with a high aromaticity such as tannins and unsaturated hydrocarbons with low molecular weight and low double bond equivalent. In addition, aerobic/hypoxic environments can alter microbial metabolic pathways of sediment-derived DOM by affecting the relative abundance of microbial communities (e.g., Gemmatimonadetes and Acidobacteria) and functional genes (e.g., ABC.PE.P1 and ABC.PE.P) in macrophyte-dominated lakes. The abundances of lipids, unsaturated hydrocarbons, and protein compounds in aerobic environments decreased by 58 %, 50 %, and 44 %, respectively, compared to in hypoxic environments under microbial degradation. The results of this study deepen our understanding of DOM biodegradation in macrophyte-dominated lakes under different redox environments and provide new insights into nutrients releases from sediment and continuing eutrophication in macrophyte-dominated lakes.

Study on the effect of compound cultivation on the growth feature and active ingredients content of Salvia miltiorrhiza.

We investigated the effects of the complex cultivation of Salvia miltiorrhiza on microbial communities, secretions, yield, and active ingredients, and the mechanism of action between microbial communities, secretions, and S. miltiorrhiza growth and development. Neither maize nor soybean was suitable to grow with S. miltiorrhiza, but sesame significantly increased salvinone content, the active ingredient of S. miltiorrhiza, and Tanshinone IIA, Tanshinone I, and Cryptotanshinone increased by 27.06%, 22.76%, and 26.41%, respectively, which increased the abundance and number of microbial communities in S. miltiorrhiza roots. 16S rRNA results showed that the most abundant bacterial phyla were Proteobacteria and Acidobacteriota, and their number increased with compound planting of sesame and S. miltiorrhiza. Salvia inter-root secretions affected the microbial community and Salvia growth and development, and lipids and lipid-like molecules significantly reduced Salvia yield and active ingredients. Overall, different plant secretions can lead to differences in the natural environment and Salvia root growth and development, and the composite planting of sesame with Salvia can improve inter-root microbial communities, enhance Salvia quality, and make fuller use of land resources.