Complete Genome Sequence of Xanthomonas arboricola pv. juglandis Strain DW3F3, Isolated from a Juglans regia L. Bacterial Blighted Fruitlet.

Benzhong Fu,Qianqian Chen,Lihua Wang,Jieqian Zhu,Lulu Zou,Guoyuan Li,Mi Wei

doi:10.1128/genomea.00023-18

Benzhong Fu, Qianqian Chen + Show 5 more

Open Access

https://doi.org/10.1128/genomea.00023-18

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Abstract

ABSTRACTHere, we report the complete genome sequence of Xanthomonas arboricola pv. juglandis DW3F3, a strong pathogenic strain isolated from blighted walnut immature fruit (Juglans regia L. cv. Qingxiang). The genome consists of a single chromosome (5,144 kb).

Highlights

We report the complete genome sequence of Xanthomonas arboricola pv. juglandis DW3F3, a strong pathogenic strain isolated from blighted walnut immature fruit
The initial scaffold was later subjected to a finishing process using the CLC Genomics Workbench software, and gaps were removed with recursive rounds of short reads mapped against the scaffold with the GapCloser and GapFiller tools [10]
Juglandis strain DW3F3 genome sequence and annotation data have been deposited at DDBJ/EMBL/GenBank under the accession number PNRC00000000

Summary

Introduction

We report the complete genome sequence of Xanthomonas arboricola pv. juglandis DW3F3, a strong pathogenic strain isolated from blighted walnut immature fruit The genome sequence was obtained using the MiSeq system (Illumina, Inc., San Diego, CA) with two paired-end libraries, which generated 1,861,577,316 and 2,013,450,108 reads. The estimated genome coverage with these two libraries was ϳ72-fold.

Results

Conclusion