Ceramic composites with high temperature strengths and low neutron cross-sections are promising candidates for core materials in advanced nuclear systems. In present work, SiC-20 vol% ZrC composites were irradiated with 500 keV He-ions at 25, 500 and 800 °C to evaluate the effect of irradiation temperature on the structural damage and bubble evolution in ceramic composites. XRD and Raman spectra analysis give that the irradiation resulted in structural damages of both SiC and ZrC. TEM observations reveal the formation of helium bubbles and defect clusters after irradiation. Moreover, the occurrence of micro-cracks in ZrC grains and amorphization of SiC are observed for the samples irradiated at room temperature. Nanoindentation test showed that there is irradiation induced hardening or softening of the composites which depends on the irradiation temperature or fluence. The correlation between microstructural evolution and mechanical properties response is discussed.