Wild Varieties Research Articles

Combining Deep Learning and Structural Modeling to Identify Potential Acetylcholinesterase Inhibitors from Hericium erinaceus.

Alzheimer's disease (AD) is the most common type of dementia, affecting over 50 million people worldwide. Currently, most approved medications for AD inhibit the activity of acetylcholinesterase (AChE), but these treatments often come with harmful side effects. There is growing interest in the use of natural compounds for disease prevention, alleviation, and treatment. This trend is driven by the anticipation that these substances may incur fewer side effects than existing medications. This research presents a computational approach combining machine learning with structural modeling to discover compounds from medicinal mushrooms with a high potential to inhibit the activity of AChE. First, we developed a deep neural network capable of rapidly screening a vast number of compounds to indicate their potential to inhibit AChE activity. Subsequently, we applied deep learning models to screen the compounds in the BACMUSHBASE database, which catalogs the bioactive compounds from cultivated and wild mushroom varieties local to Thailand, resulting in the identification of five promising compounds. Next, the five identified compounds underwent molecular docking techniques to calculate the binding energy between the compounds and AChE. This allowed us to refine the selection to two compounds, erinacerin A and hericenone B. Further analysis of the binding energy patterns between these compounds and the target protein revealed that both compounds displayed binding energy profiles similar to the combined characteristics of donepezil and galanthamine, the prescription drugs for AD. We propose that these two compounds, derived from Hericium erinaceus (also known as lion's mane mushroom), are suitable candidates for further research and development into symptom-alleviating AD medications.

Evaluation of the Phenolic Content and the Nutraceutical Potential of Ancestor and Cultivated Artichokes.

Wild cardoon (Cynara cardunculus var. sylvestris) is the ancestor of many cultivated forms, including globe artichoke (C. cardunculus var. scolymus). Four organs (receptacles, bracts, leaves and stems) of wild and cultivated artichokes (organic and conventional) were assessed considering their individual phenolic constituents (HPLC-DAD), total phenol-flavonoid content, and pharmaceutical potentials (antibacterial and antioxidant). All three sources of artichokes had the highest concentration of 1,3-dicaffeoylquinic acid (cynarin) in their receptacles and cultivated artichoke receptacles had more cynarin than wild one. On the other hand, receptacles of wild cardoon had the highest 1,5-dicaffeoylquinic acid and caffeic acid than the cultivated ones. Generally, receptacles, stems and leaves of wild cardoon were superior to both cultivated artichokes on antioxidant potential, and total phenol-flavonoid content. The rise in total phenolic content can be attributed to an increase in antioxidant capacity in all artichoke organs. Only the leaves of all different artichokes showed antibacterial activity against Gram-positive bacteria. The investigated wild cardoon was believed to be a true ancestor since a comparison of wild and cultivated varieties revealed similar trends in terms of phenolic profile and biological properties. The nutraceutical industry can profit from this invasive wild cardoon due to their strong antioxidant potential and phenolic content.

OLEAtool: An open-source software for morphopalynological research in Olea europaea L. pollen

In this paper we present OLEAtool, a new software tool for palynological research to facilitate morphological analysis and measurements of Olea pollen. OLEAtool is a macro extension for use with ImageJ, an open-access and freely available image analysis software, and was developed as a component of the OLEA-project. This larger project examines olive tree expansion and mosaic landscape formation on the Balearic Islands. Pollen analysis of both fossil and modern grains has been proven useful for characterizing cultivars and therefore an important method for studying olive tree cultivation in the Mediterranean. However, these methods still struggle with distinguishing between wild and cultivated varieties. Traditional morphological analysis of pollen grains can be a difficult and time-consuming task. However, OLEAtool dramatically increases the speed of collecting data on pollen grains, expands the number of variables an analyst can measure, and greatly enhances the replicability of morphological analysis.

T-DNA insertion mutants of Arabidopsis DA1 orthologous genes displayed altered plant height and yield-related traits in rice (O. Sativa L.).

The Arabidopsis DA1 gene is a key player in the regulation of organ and seed development. To extend our understanding of its functional counterparts in rice, this study investigates the roles of orthologous genes, namely DA1, HDR3, HDR3.1, and the DA2 ortholog GW2, through the analysis of T-DNA insertion mutants. The aim of this research is to elucidate the impact of T-DNA insertions in DA1, HDR3, HDR3.1, and GW2 on agronomic traits in rice. By evaluating homozygous plants, we specifically focus on key parameters such as plant height, tiller number, days to heading, and grain size. T-DNA insertion locations were validated using PCR, and subsequent analyses were conducted on homozygous plants. Agronomic traits, including plant height, tiller number, days to heading, and grain size, were assessed. Additionally, leaf senescence assays were performed under dark incubation conditions to gauge the impact of T-DNA insertions on this physiological aspect. The study revealed distinctive phenotypic outcomes associated with T-DNA insertions in HDR3, HDR3.1, GW2, and DA1. Specifically, HDR3 and HDR3.1 mutants exhibited significantly reduced plant height and smaller grain size, while GW2 and DA1 mutants displayed a notable increase in both plant height and grain size compared to the wild type variety Dongjin. Leaf senescence assays further indicated delayed leaf senescence in hdr3.1 mutants, contrasting with slightly earlier leaf senescence observed in hdr3 mutants under dark incubation. The findings underscore the pivotal roles of DA1 orthologous genes in rice, shedding light on their significance in regulating plant growth and development. The observed phenotypic variations highlight the potential of these genes as targets for crop improvement strategies, offering insights that could contribute to the enhancement of agronomic traits in rice and potentially other crops.

Deciphering PDH1's role in mung bean domestication: a genomic perspective on pod dehiscence.

Mung bean (Vigna radiata) stands as a crucial legume crop in Asia, contributing to food security. However, our understanding of the underlying genetic foundation governing domesticated agronomic traits, especially those linked to pod architecture, remains largely unexplored. In this study, we delved into the genomic divergence between wild and domesticated mung bean varieties, leveraging germplasm obtained from diverse sources. Our findings unveiled pronounced variation in promoter regions (35%) between the two mung bean subpopulations, suggesting substantial changes in gene expression patterns during domestication. Leveraging transcriptome analysis using distinct reproductive stage pods and subpopulations, we identified candidate genes responsible for pod and seed architecture development, along with Genome-Wide Association Studies (GWAS) and Quantitative Trait Locus (QTL) analysis. Notably, our research conclusively confirmed PDH1 as a parallel domesticated gene governing pod dehiscence in legumes. This study imparts valuable insights into the genetic underpinnings of domesticated agronomic traits in mung bean, and simultaneously highlighting the parallel domestication of pivotal traits within the realm of legume crops.

Utilizing Integrated UHPLC-Q-Exactive Orbitrap-MS, Multivariate Analysis, and Bioactive Evaluation to Distinguish between Wild and Cultivated Niudali (Millettia speciosa Champ.).

Millettia speciosa Champ. (MSCP) enjoys widespread recognition for its culinary and medicinal attributes. Despite the extensive history of MSCP cultivation, the disparities in quality and bioactivity between wild and cultivated varieties have remained unexplored. In this study, 20 wild and cultivated MSCP samples were collected from different regions in China. We embarked on a comprehensive investigation of the chemical constituents found in both wild and cultivated MSCP utilizing UHPLC-Q-Exactive Orbitrap-MS technology and multivariate analysis such as principal component analysis (PCA) and orthogonal partial least squares discriminant analysis (OPLS-DA). In total, 62 chemical components were unequivocally identified or tentatively characterized. Via the multivariate statistical analysis, we successfully pinpointed nine compounds with the potential to serve as chemical markers, enabling the differentiation between wild and cultivated MSCP varieties. Moreover, both genotypes exhibited substantial antioxidant and anti-fatigue properties. The bioactivities of wild MSCP were marginally higher when compared to their cultivated counterparts. This study illuminates the impressive antioxidant and anti-fatigue potential present in both wild and cultivated MSCP genotypes, further augmenting the allure of this species and opening new avenues for the economic valorization of MSCP. Hence, this study provides a valuable method for the identification and quality control of MSCP and a method in chemistry and pharmacology to assess an alternative possibility for cultivated MSCP.

Occurrence of the <i>FBF</i>7 fire blight resistance locus in accessions of apple wild species (<i>Malus</i> Mill.)

Background. Fire blight (Erwinia amylovora (Burill) Winslow et al.) is a dangerous disease of fruit crops. In the Russian Federation, fire blight is one of the quarantine diseases. Apple resistance to fire blight is controlled polygenically. However, the data on the genotypes of Malus Mill. wild species and varieties in the context of individual resistance loci are scarce. The purpose of the research was studying the genetic collection of apple wild species according to the FBF7 fire blight resistance locus to identify promising sources of resistance to E. amylovora.Materials and methods. The materials of this study included 23 wild and two cultivated apple-tree species (50 accessions) from the genetic collection of the I.V. Michurin FSC. The FBF7 QTL for fire blight resistance was identified with the flanking SCAR-markers AE10-375 and GE-8019, and SSR-marker CH-F7-Fb1.Results and conclusion. The GE-8019 marker was identified in 50.0% of the apple accessions, AE10-375 in 76.0% of the accessions, and CH-F7-Fb1 in 30.0%. Inter- and intraspecific polymorphism of the Malus genus was revealed for the analyzed resistance locus, as well as for individual DNA markers linked to the FBF7 QTL. The GE-8019 and AE10-375 markers flanking the FBF7 QTL were found in 42.0% of the studied genotypes. Meanwhile, three diagnostic markers (GE-8019, AE10-375, and CH-F7-Fb1) were identified only in 7 accessions: M. × robusta var. persicifolia (Carr.) Rehd. (к-41279), M. × cerasifera var. hiemalis Spach. (к-2342) (Ser. Baccatae), M. sylvestris (L.) Mill. (k-73 and k-123), M. × spectabilis var. albi plena (Ait.) Borkh. (к-2416) (Ser. Malus), M. × sargentii (Rehd.) Langenf. (k-2428) (Ser. Toringonae), and M. coronaria (L.) Mill. (к-2336) (Ser. Coronariae). These forms are promising genetic sources of resistance to E. amylovora.

Research on species identification of wild grape leaves based on deep learning

There are more than 70 species of Vitis in the world, and 40 species, 1 subspecies and 13 varieties of Vitis native from China. Wild grapes are diverse and complex, and it is difficult to identify. As an important research direction, deep learning can quickly extract the deep features of images under the premise of ensuring high accuracy, and is widely used in the field of image classification and recognition. In this study, the images of mature leaves of 23 species of wild grapes under natural conditions were selected as the research objects, and the images of leaves were collected by smart phones to construct a wild grape leaf data set with a number of 10,077 images. Four deep learning networks (GoogleNet, ResNet-50, ResNet-101, VGG-16) were used to identify the leaf images of wild grapes. The classification network with the highest average accuracy is ResNet-101, average accuracy and recall rate are 98.64 % and 95.98 %, respectively. Among the 23 categories of the detection model, the prediction accuracy of 12 categories reached 100 %, and the recognition recall rate of 13 categories reached 100 %. It proves the feasibility of deep learning network model to identify leaf species in natural environment, and realizes automatic real-time identification of wild grapes, so as to provide reference for the protection, utilization, classification research of wild grapes and variety identification of other crops.

Physico-chemical characterisation of whole meal flours from three wild chickpea varieties and their technological performance in Gluten Free Bread

The present study investigated the physico-chemical characteristics of whole-meal flours from three wild chickpea varieties (white chickpea – WC, red rough chickpea – RRC, red smooth chickpea – RSC) compared to a modern chickpea variety (MC) and their bread-making performances in 30% (w/w flour) substituted GF breads. Wild chickpea flours showed the highest ash, total dietary fiber (TDF), and total antioxidant capacity (6.3%, 13.4%, and 9.5% increase for WC, RRC, and RSC flour compared to MC flour) values compared to MC sample, and red varieties (RRC- and RSC-samples) showed the highest total phenolic content (15.5% and 17.0% increase compared to MC flour). Significant differences were also found in protein content and techno-functional properties. Bread specific volume and crumb hardness were significantly affected by chickpea variety, with red varieties (RRC- and RSC-samples) revealing the lowest impact. 1H NMR proton molecular mobility significantly changed as a function of chickpea variety, and these differences might be associated to the different macroscopic bread quality. Overall, the tested wild chickpea flours revealed valuable chemical composition, and differed in the techno-functional and bread-making performances, with red varieties showing the most promising results to improve GF breads.

The importance of the Tulip Festival in the development of event tourism in Zhambyl region

Event tourism is extremely popular all over the world. Millions of sports fans, lovers of various festivals, admirers of outstanding artists travel around the planet to attend those events that meet their needs. In this regard, in order to attract inbound and domestic tourists, it is necessary to define regional brands of an exotic nature in the regions of Kazakhstan, on the basis of which it will be possible to develop event tourism. This article is devoted to the study of the significance of the tulip festival in the Zhambyl region for the development of event tourism. Particular attention is paid to the study of the diversity of wild tulip varieties in their natural habitat, attracting tourists and researchers not only from Kazakhstan, but also from all over the world. The influence of the festival on attracting the attention of the world community to the problem of preserving biodiversity in the Central Asian region is analyzed. It is concluded that it is wild tulips that can become a regional tourism brand of the republic, various festivals will contribute to the sustainable growth of tourism and the economy of the region, and the development of event tourism will give impetus to the revival of the intangible cultural heritage of the country.

Evaluation of the Hepatoprotective Properties of Traditional Formulations Based on Cochlospermum tinctorium Used in Benin.

Hepatic diseases represent a public health problem. Among the approaches to their management is the use of traditional treatments based on the use of medicinal plants. In Benin, several recipes based on Cochlospermum tinctorium are used in the treatment of hepatitis without a real scientific basis. This study aimed to evaluate the hepatoprotective effects and acute oral toxicity of 10 of these recipes. The variables studied were the variety of C. tinctorium (wild form vs. cultivated form), the species associated with C. tinctorium (Combretum micranthum vs. Chromolaena odorata), and the proportion of C. tinctorium in the recipe (1; 4/5; 1/2). The hepatoprotective effect of these extracts at doses of 100, 200, and 400 mg/kg/bw was evaluated in Wistar rats subjected to hepatotoxicity induction through the administration of 5 g/kg of paracetamol. Acute oral toxicity was assessed following the OECD 423 protocol. The results revealed an absence of acute oral toxicity for the 10 recipes. The hepatoprotective tests conducted indicated that the hepatoprotective effect of C. tinctorium is dose dependent. The wild variety of C. tinctorium had a better hepatoprotective effect than the cultivated one. The association with C. micranthum enhances the hepatoprotective effect of C. tinctorium, unlike that with C. odorata. This study emphasizes that the combination of C. tinctorium with C. micranthum in the treatment of hepatitis is scientifically justified and it exhibits a dose-dependent hepatoprotective effect.

Genetic Evaluation of Recombinant Inbred Lines of Rice Derived from Swarna-Sub1 x AC 20431B for Yield Related Traits

Submergence is the third most important abiotic stress hugely affecting yield and productivity in rice. There are many wild varieties and landraces available which are tolerant to submergence stress. These genotypes can be utilized as donors in different breeding programs. The population derived from such germplasms are subjected to genetic evaluation for yield and yield related attributes for development of lines that are high yielding as well as tolerant to submergence. The present investigation was executed in 120 Recombinant Inbred Lines (RIL) population (F10) derived from Swarna-Sub1 x AC 20431B along with four land races and Swarna-Sub1 to elucidate the association existing between yield and yield attributing characters. Apart from this, Correlation and path analysis was also employed to study direct and indirect effect on grain yield. Observations for agro-morphological traits such as days to 50% flowering, plant height, panicle length, total number of tillers, number of effective tillers per plant, number of filled grains and Spikelet fertility, test weight, grain yield per plant, biomass per plant and harvest index were recorded and analyzed for various variability parameters. Correlation and path coefficient analysis were also carried out. High heritability and genetic advance values were observed for days to 50% flowering, plant height, panicle length, total number of tillers per plant, effective tillers per plant, filled grains per panicle, spikelet fertility, test weight, grain yield and biomass per plant. Among all the characters; filled grains per panicle, biomass and harvest index per plant showed significant correlation with grain yield. Effective number of tillers per plant has the highest positive direct effect on grain yield.

Genetic diversity analysis of indigenous pomegranate (Punica granatum L.) germplasm lines

Pomegranate (Punica granatum L.) is an ancient edible fruit crop well recognized for its immense nutraceutical and medicinal properties. Precise morphological characterization of wild, exotic and commercial (cultivar) varieties and understanding the molecular variability in perennial crops like pomegranate is essential for developing varietal DNA fingerprints, identifying true-to-type of genotypes, to avoid duplication and overcome the problem of clonal admixture. It has become a challenge to identify varieties based solely on observable phenotypic traits due to dynamic environmental factors that influence physical traits and increasing number of varieties. Hence, the implementation of stable molecular markers is the best complementary biotechnological tool, which fulfil the above requirements. In our first objective, we identified 24 polymorphic SSR markers out of 40. These SSRs screened on 13 different varieties of pomegranate. The PIC value ranged from 0.13 to 0.37 (mean 0.25) and heterozygosity percent ranged from 0.14% to 0.50% (mean 0.35%). Highest PIC value and heterozygosity observed in PgSSR78 marker. Similarity coefficient matrix showed the genetic distance between the twenty-four varieties, ranged from 0.58 to 0.99. Maximum similarity was observed between Alah and Khandari. Minimum similarity was found between IC318743 and 1185 followed by Maha and 1185. PgSSR16, PgSSR23, PgSSR49, PgSSR60, PgSSR32, PgSSR40, PgSSR78 markers were found with high PIC value and heterozygosity and these primers could be useful for pomegranate cultivar identification. From this study, microsatellite markers have proven to be very useful marker for developing varietal identification marker at early growth stage due to its high polymorphism, abundance, multi-allelic and co-dominant inheritance

Genomic signatures of strawberry domestication and diversification.

Cultivated strawberry (Fragaria × ananassa) has a brief history of less than 300 yr, beginning with the hybridization of octoploids Fragaria chiloensis and Fragaria virginiana. Here we explored the genomic signatures of early domestication and subsequent diversification for different climates using whole-genome sequences of 289 wild, heirloom, and modern varieties from two major breeding programs in the United States. Four nonadmixed wild octoploid populations were identified, with recurrent introgression among the sympatric populations. The proportion of F. virginiana ancestry increased by 20% in modern varieties over initial hybrids, and the proportion of F. chiloensis subsp. pacifica rose from 0% to 3.4%. Effective population size rapidly declined during early breeding. Meanwhile, divergent selection for distinct environments reshaped wild allelic origins in 21 out of 28 chromosomes. Overlapping divergent selective sweeps in natural and domesticated populations revealed 16 convergent genomic signatures that may be important for climatic adaptation. Despite 20 breeding cycles since initial hybridization, more than half of loci underlying yield and fruit size are still not under artificial selection. These insights add clarity to the domestication and breeding history of what is now the most widely cultivated fruit in the world.

Telomere-to-telomere and gap-free genome assembly of a susceptible grapevine species (Thompson Seedless) to facilitate grape functional genomics.

Grapes are globally recognized as economically significant fruit trees. Among grape varieties, Thompson Seedless holds paramount influence for fresh consumption and for extensive applications in winemaking, drying, and juicing. This variety is one of the most efficient genotypes for grape genetic modification. However, the lack of a high-quality genome has impeded effective breeding efforts. Here, we present the high-quality reference genome of Thompson Seedless with all 19 chromosomes represented as 19 contiguous sequences (N50 = 27.1Mb) with zero gaps and prediction of all telomeres and centromeres. Compared with the previous assembly (TSv1 version), the new assembly incorporates an additional 31.5Mb of high-quality sequenced data with annotation of a total of 30 397 protein-coding genes. We also performed a meticulous analysis to identify nucleotide-binding leucine-rich repeat genes (NLRs) in Thompson Seedless and two wild grape varieties renowned for their disease resistance. Our analysis revealed a significant reduction in the number of two types of NLRs, TIR-NB-LRR (TNL) and CC-NB-LRR (CNL), in Thompson Seedless, which may have led to its sensitivity to many fungal diseases, such as powdery mildew, and an increase in the number of a third type, RPW8 (resistance to powdery mildew 8)-NB-LRR (RNL). Subsequently, transcriptome analysis showed significant enrichment of NLRs during powdery mildew infection, emphasizing the pivotal role of these elements in grapevine's defense against powdery mildew. The successful assembly of a high-quality Thompson Seedless reference genome significantly contributes to grape genomics research, providing insight into the importance of seedlessness, disease resistance, and color traits, and these data can be used to facilitate grape molecular breeding efforts.

The Determination of Secondary Metabolites of Kamchatka Honeysuckle Lonicera caerulea var. kamtschatika Sevast.

For the first time, a comprehensive analysis of polyphenolic compounds in extracts of Kamchatka honeysuckle berries (Lonicera caerulea var. kamtschatica Sevast.) was carried out. We used 5 samples of wild honeysuckle and one variety sample Elena from the collection of the Kamchatka Research Institute of Agriculture. High-resolution tandem mass spectrometry was used to identify target analytes in the extracts. 58 polyphenolic compounds corresponding to the Caprifoliaceae family have been identified. Among the identified analytes, some compounds were determined for the first time: flavones—hydroxy genistein, diosmetin O-hexoside, chrysoeriol-O-diglucoside; flavanols—herbacetin, myricetin, astragalin, taxifolin-O-hexoside, rhamnocitrin; flavan-3-ols—epiafzelechin, epicatechin-O-hexoside, epigallocatechin-epicatechin dimer; phenolic acids—hydroxyferulic acid, hydroxy methoxy dimethylbenzoic acid, neochlorogenic acid, ellagic acid; stilbenes—pinosylvin, resveratrol and many other polyphenols. The richest in the content of polyphenolic compounds was the wild form variety nos. 5–23 polyphenolic compounds, followed by the Elena variety—21 polyphenolic compounds.

Complex evaluation of wild pear

Abstract The National Centre for Biodiversity and Gene Conservation (NBGK) started the gene bank collection and agrobotanical evaluation of wild pear varieties in 2022. The survey of individuals and the recording of descriptors was carried out in several rounds. Part of the data was recorded in situ on the field, and the other part was analysed after the trip. For the in-situ collection of wild fruit plant species and varieties, it was necessary to develop a method for the collection and description. This applied to the development of the survey methodology as well as to the design of the working method.

Fluctuation of ecological niches and geographic range shifts along chile pepper's domestication gradient.

Domestication is an ongoing well-described process. However, while many have studied the changes domestication causes in plant genetics, few have explored its impact on the portion of the geographic landscape in which the plants exist. Therefore, the goal of this study was to understand how the process of domestication changed the geographic space suitable for chile pepper (Capsicum annuum) in its center of origin (domestication). C. annuum is a major crop species globally whose center of domestication, Mexico, has been well-studied. It provides a unique opportunity to explore the degree to which ranges of different domestication classes diverged and how these ranges might be altered by climate change. To this end, we created ecological niche models for four domestication classes (wild, semiwild, landrace, modern cultivar) based on present climate and future climate scenarios for 2050, 2070, and 2090. Considering present environment, we found substantial overlap in the geographic niches of all the domestication classes. Yet, environmental and geographic aspects of the current ranges did vary among classes. Wild and commercial varieties could grow in desert conditions, while landraces could not. With projections into the future, habitat was lost asymmetrically, with wild, semiwild, and landraces at greater risk of territorial declines than modern cultivars. Further, we identified areas where future suitability overlap between landraces and wilds is expected to be lost. While range expansion is widely associated with domestication, we found little support of a constant niche expansion (either in environmental or geographical space) throughout the domestication gradient in chile peppers in Mexico. Instead, particular domestication transitions resulted in loss, followed by capturing or recapturing environmental or geographic space. The differences in environmental characterization among domestication gradient classes and their future potential range shifts increase the need for conservation efforts to preserve landraces and semiwild genotypes.

A systematic study on composition and antioxidant of 15 varieties of wild Idesia polycarpa fruits in China

Idesia polycarpa is a good source of high-quality vegetable oil and can potentially alleviate pressure on the supply of edible oil. Exploring Idesia polycarpa could enrich the world’s food and oil resources and make up for the shortage of vegetable oil types and production. Here, 15 varieties of wild Idesia polycarpa from major wild Idesia polycarpa resource belts in the middle and upper reaches of the Yangtze River in China were investigated to elucidate the quality and antioxidant activity of wild Idesia polycarpa fruits to tap the potential exploitation capacity of Idesia polycarpa. In this study, wild Idesia polycarpa varieties with high oil quality and antioxidant activity were screened by the comprehensive evaluation of 42 indexes including oil content, dry basis white grain weight, fatty acids, tocopherols, total flavonoids, and minerals, as well as comparisons of free radical scavenging of 2,2′-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid (ABTS)) and 1,1-diphenyl-2-picrylhydrazyl (DPPH). The result showed the quality characteristics of 15 wild Idesia polycarpa: oil (MN:29.21/100 g), dry basis white grain weight (MN:17.32 g), total flavonoids (MN:27.27 RE/kg), total polyphenols (MN:159.63 GAE/kg), tocopherols [MN:356.10 mg/kg (α-tocopherol (MN:284.96 mg/kg), γ-tocopherol (MN:50. 20 mg/kg), β-tocopherol (MN:9.54 mg/kg), and δ-tocopherol (MN:11.40 mg/kg)], total mineral content (MN:25653.44 mg/kg), and fatty acids [MN:20.89/100 g (70.42% polyunsaturated fatty acids (MN:14.63/100 g), 20.29% saturated fatty acids (MN:4.25/100 g), and 9.29% monounsaturated fatty acids (MN:2.01/100 g)]. Correlation analysis revealed that flavonoids, C16:0, C18:1n9c, C18:2n6c, polyphenols, α-tocopherol, δ-tocopherol, and Ca were significantly correlated with DPPH and ABTS. Cluster analysis and principal component analysis classified the 15 wild samples into three clusters, with the first cluster represented by H8, H6, and H9 being the optimal sample as a woody oilseed crop, the second cluster represented by H10, H 12, and H11 being the optimal sample for functional oil development, and the rest could be selected with emphasis when conducting certain characteristic product development. The excellent lipids and rich nutritional and antioxidant properties suggest that Idesia polycarpa will be a new direction for the development of edible oil resources in the future.

Epigenetic mechanism of Gtl2-miRNAs causes the primitive sheep characteristics found in purebred Merino sheep

BackgroundIt is not uncommon for some individuals to retain certain primitive characteristics even after domestication or long-term intensive selection. Wild ancestors or original varieties of animals typically possess strong adaptability to environmental preservation, a trait that is often lacking in highly artificially selected populations. In the case of the Merino population, a world-renowned fine wool sheep breed, a phenotype with primitive coarse wool characteristic has re-emerged. It is currently unclear whether this characteristic is detrimental to the production of fine wool or whether it is linked to the adaptability of sheep. The underlying genetic/epigenetic mechanisms behind this trait are also poorly understood.ResultsThis study identified lambs with an ancestral-like coarse (ALC) wool type that emerged during the purebred breeding of Merino fine wool sheep. The presence of this primitive sheep characteristic resulted in better environmental adaptability in lambs, as well as improved fine wool yield in adulthood. Reciprocal cross experiments revealed that the ALC phenotype exhibited maternal genetic characteristics. Transcriptomic SNP analysis indicated that the ALC phenotype was localized to the imprinted Gtl2-miRNAs locus, and a significant correlation was found between the ALC wool type and a newly identified short Interstitial Telomeric Sequences (s-ITSs) at this locus. We further confirmed that a novel 38-nt small RNA transcribed from these s-ITSs, in combination with the previously reported 22-nt small RNAs cluster from the Gtl2-miRNAs locus, synergistically inhibited PI3K/AKT/Metabolic/Oxidative stress and subsequent apoptotic pathways in wool follicle stem cells, resulting in the ALC wool type. The necessity of Gtl2-miRNAs in controlling primary hair follicle morphogenesis, as well as the wool follicle type for ALC wool lambs, was verified using intergenic differentially methylated region-knockout mice.ConclusionThe ALC wool type of Merino sheep, which does not reduce wool quality but increases yield and adaptability, is regulated by epigenetic mechanisms in the imprinted Gtl2-miRNAs region on sheep chromosome 18, with the maternally expressed imprinted gene responsible for the ALC phenotype. This study highlights the significance of epigenetic regulation during embryonic and juvenile stages and emphasizes the advantages of early adaptation breeding for maternal parents in enhancing the overall performance of their offspring.