Abstract A severe drought struck southwest China during autumn 2009, which had a huge impact on productivity and the lives of the affected population. A nonconventional El Niño, the so-called warm pool (WP) El Niño, was supposed to be a principal factor of this strong autumn drought. In sharp contrast to a conventional El Niño, in the 2009 WP El Niño year the maximum sea surface temperature (SST) anomalies are confined to the central equatorial Pacific Ocean. Moreover, this WP El Niño was characterized by the relatively farther westward location and the strongest intensity among the WP El Niño events in the past 60 years. Observations and modeling studies both indicate that the rainfall deficits over southwest China are significantly influenced by the combined effects of the location and intensity of the WP El Niño. That is, the drought over southwest China tends to be more severe when the warming SST anomalies associated with the WP El Niño are located farther westward and are stronger. Therefore, the strong autumn drought over southwest China in 2009 can be largely attributed to the concurrent distinctive WP El Niño, which generates a strongly anomalous cyclone over the west North Pacific and leads to a serious reduction in rainfall over southwest China. The influence of the Indian Ocean warming on autumn rainfall over southwest China was also examined but seems to have little contribution to this drought.