Sediment-water Interface Research Articles

Validation and Application of the Diffusive Gradients in Thin-Films Technique for In Situ Measurement of β-Blocker Drugs in Waters and Sediments

The occurrence of β-blocker drugs in aquatic environments worldwide has caused increasing attention to their threat to human health in recent years. It is essential to monitor these widely prescribed pharmaceuticals in natural waters and sediments, helping us investigate their potential risk to humans and ecosystems. In this study, a passive sampling technique, diffusive gradients in thin-films (DGT), was systematically developed for eight frequently detected β-blockers. The effective capacities of target compounds were large enough for the devices to deploy for several weeks. The uptake of all compounds was linearly correlated with deployment times during the 7-day laboratory experiment and agreed well with the theoretical line, except for several compounds (e.g., ATL) due to their relatively slow uptake rate. The performance of most compounds was independent of varying pH values and organic matter contents; only a few compounds were affected, while the application in high-salinity environments needs to be conducted with caution. Field deployments of DGT to detect β-blockers in situ in rivers and sediments proved that DGT is an effective tool to monitor β-blocker drugs and their fate in the natural aquatic environment, while DGT probes can provide information for us to investigate the biogeochemical processes occurred in sediment, especially at the sediment–water interface. This novel approach will help us understand the behaviour of β-blocker drugs in the aquatic environment, assess their risks, finally protect human health and maintain the sustainable development of the ecosystem.

Seasonal hypoxia enhances sediment iron-bound phosphorus release in a subtropical river reservoir

Dams worldwide commonly accelerate the eutrophication of reservoirs. While the seasonal hypoxia in deep reservoirs is widely acknowledged, there is limited research on its impact on benthic phosphorus (P) cycling and P fraction release from the reservoir sediments. Here we show that seasonal hypoxia enhances sediment P release and P fluxes at the sediment-water interface (SWI) which might alter P dynamics in deep reservoirs. We conducted a detailed measurement of sediment P fractions through the SEDEX approach, combined with a labile P gradient analysis using the diffusive gradients in thin films (DGT) technique to understand P cycling patterns in sediments during the transition period from spring (oxic) to late summer (hypoxic) conditions. The sediment P pool was predominantly composed of iron-bound phosphorus (Fe−P, 76–80 %), primarily due to the widespread occurrence of lateritic red soil (rich in Fe2O3/MnO2) in subtropical areas. More organic-P was observed in summer compared to spring. A significant increase in labile P occurred at the depth of 0–4 cm and 0–1 cm in spring and summer, respectively, where sediment P release was primarily governed by the reduction of Fe−P and the generation of S2−. A higher apparent fluxes of phosphate across the SWI were observed in summer characterized by higher temperature and lower oxygen levels. The current results suggest that seasonal hypoxia was a crucial factor affecting P cycling and diffusion in deep reservoirs. These findings present important implications for the ecology and management of the watershed-coast ecosystem.

Comprehensive risk assessment and interactions of fluoride and boron ions in the water-sediments interface: The Red Sea, Egypt

This study presents a baseline evaluation of the distribution, human and ecotoxicological risk, and the potential interactions of fluoride and boron in the water-sediment interface in 25 locations from incredible Red Sea tourist destinations. Results showed comparable levels of B and F in the water and sediments with previous literature. Significant positive correlation was found between B and F (r = 0.57; P<0.01). Based on the sediment/liquid partition coefficient (Kd), F is more likely to be released from the sediment into seawater (logKd< 3) than B (3<logKd< 4). pH and alkalinity may affect water-sediment interactions of B and F, respectively, while SO42− and Cl− ions had no significant effect on adsorption ability of F and B. The majority of minerals had average saturation Index (SI) > 1 referring to the over saturation of seawater with these minerals and their inability to dissolve. The formation of CF, FAP, and CFAP may be related to the high correlation between Fw (r = 0.928, P< 0.01; r = 0.527, P< 0.01; r = 0.608, P< 0.01) and Bw (r = 0.38, P< 0.05; r = 0.38, P< 0.05; r = 0.397, P< 0.05). Total hazard quotient (THQ) for children and adults were <1, revealing no health risks from exposure to B and F through ingestion and skin contact while swimming. The risk characterization ratio; RCRmix(MEC/PNEC) showed high short-term risks to aquatic organisms. Further investigations might emphasis on emerging mitigation strategies to address these concerns.

Combination of lanthanum-modified attapulgite and Vallisneria natans for immobilization of phosphorus in various types of sediments

As a kind of phosphorus (P) inactivating agent, lanthanum-modified attapulgite (LMA) has effectively been used for controlling the release of P from sediments. However, the effects of LMA on sediments from different types of ecological environments, especially in the rhizosphere of macrophyte, have not yet been studied. In this study, sediments from black-odor rivers (Black-S), cyanobacteria blooms-dominated lake (Algal-S) and macrophyte-dominated lake (Phytic-S) were collected for laboratory-scale microcosmic experiments. The results indicated that LMA had a good inactivation effect on mobile P (sum of Labile-P, Fe-P and organic-P) in three types of sediments, and significantly reduced soluble and labile P in pore water. The rates of reduction of mobile P in Black-S and Algal-S were much higher than that in Phytic-S. LMA capping generated a new sediment water interface, which significantly promoted the growth of roots, the release of oxygen from Vallisneria natans, and the secretion of organic acids to improve the rate of utilization of P in sediments. Meanwhile, the addition of LMA increased the relative abundance of Sideroxydans in the rhizosphere of Vallisneria natans. The study provides a new insight into the applications of LMA capping combined with macrophyte in the restoration of sediments obtained from different ecological settings.

Barite-bearing “septarian concretions” (upper Cretaceous – Paleocene) from the Biban area (north Algeria)

The "septarian barite concretions" have garnered significant interest worldwide. This study presents the first detailed investigation of these sedimentary structures in Algeria, with a primary focus on elucidating their genesis through petrography, SEM-EDS, major and trace elements (including REEs), and sulfur isotope analysis. The sampled concretions occur in Upper Cretaceous-Paleocene marl layers from the Biban area, primarily in two main sectors (Koudiat Djebassa and Sidi Ziane), situated within the Southern Tellian Atlas in Northern Algeria (Maghrebides). While these barite concretions exhibit diverse morphologies, our analysis focuses specifically on oblate ellipsoidal concretions. The flattened shape of these concretions may stem from compressed echinoid tests or small, oblate septarian cracked concretions representing the flattened cores. Notably, these concretions feature an outer cortex of radial fibrous barite crystals, measuring centimeters in thickness. Petrographic examination coupled with SEM-EDS analysis suggests that concretion growth occurred from porewaters in unconsolidated, soft sediments at shallow burial depths beneath the sediment-water interface, manifesting in three growth episodes: (i) an initial stage characterized by primarily thin lamellar barite crystals intertwining to form rosette-like structures in concretion cores, (ii) a later stage marked by radial-fibrous barite crystal growth in concretion margins, and (iii) the filling of septarian cracks by barite. The presence of terrigenous sediment, particularly abundant in rosette-like barite crystals, indicates growth within highly porous sediment. Conversely, the radial fibrous outer cortex is related to an effective displacive growth mode. The δ34S values of the barite concretions (ranging from 16 ‰ to 24.4 ‰), consistent with seawater values, which document that seawater was the primary sulfur source. Furthermore, REE geochemistry further supports the seawater origin of diagenetic fluids rather than a hydrothermal one. Concretions are suggested to have formed in organic-rich, fine-grained sediments at shallow depth below the sea floor, in sedimentation halts, and as a result of microbial degradation of organic matter. Barium was supplied to porewaters within the methanogenic zone, precipitating as barite when, migrating upwards, reached the boundary with the overlying sulfidic zone.

Microplastics alter the microbiota-mediated phosphorus profiles at sediment-water interface: Distinct microbial effects between sediment and plastisphere

Microplastics (MPs) are ubiquitous in freshwater sediments, raising concern about their potential impacts on ecosystem services. However, the specific impacts of microbiota mediated by MPs in sediment and plastisphere compartments on P availability remain elusive. This investigation conducted a series of microcosm experiments utilizing eutrophic lake sediment amended with fuel-based polyethylene terephthalate (PET), bio-based polylactic acid (PLA) MPs, and a natural cobblestone substrate to unravel their effects. The findings highlighted that MPs induced alterations in bacterial communities in both sediment and plastisphere, consequently modifying P availabilities at the sediment-water interface (SWI). In comparison to non-biodegradable PET, biodegradable PLA MPs presented higher proportions of specific bacteria and functional genes associated with P profiles, such as Firmicutes, Ignavibacteriota, and P mineralizing genes in the sediment and plastisphere. This, in turn, elevated the levels of soluble reactive P in the porewater by 54.19 % (0–1 cm), 55.81 % (1–3 cm), and 18.24 % (3–5 cm), respectively. Additionally, PLA obviously altered P immobilization capacity and bioavailability, increasing the organic P fraction. Whereas, inert cobblestone exhibited negligible influence on P biogeochemical processes during the incubation. Moreover, the biofilm communities and those in the surrounding sediment specifically contributed to the changes in P profiles at the SWI. The functional genes associated with P profiles in the sediment mainly concentrate on P mineralization and P uptake/transport. In the plastisphere, P activation genes are obviously affected under MP exposure. This study fills the knowledge gap concerning the repercussions of MPs on ecosystem services.

Hyporheic exchange flows in a mountainous river catchment identified by distributed temperature sensing

AbstractElevated stream temperatures under low‐flows, exacerbated by global warming, are a stressor that affects aquatic species directly or in combination with other stressors. Stream temperatures are influenced by energy fluxes across the air–water interface as well as by hydrological exchange processes occurring at the water–riverbed interface. Small‐scale stream temperature dynamics influenced by exchange flows are still underrepresented in stream temperature research. To investigate high‐resolution temperature dynamics and hydrological exchange processes at the sediment–water interface we applied fiber‐optic distributed temperature sensing (FO‐DTS) at two sites in the mountainous Kinzig catchment combined with mapping and measurement of additional environmental conditions. Two types of temperature anomalies could be observed at one site under conditions of low flow and high air temperature. Dampening effects coincided with riverine features such as pools, vegetation roots, fine sediment, and signs of streambank seepage which indicated hyporheic exchange flows. Increased heating of the substrate during the day was identified in shallow sections where sediment was exposed to the air and shading from riparian vegetation was patchy. At another site, at which the cable could not be buried because of the sediment composition, temperature anomalies in the overlying water indicated diffuse groundwater exfiltration. The results show that small‐scale processes in the hyporheic zone, low water tables, and riparian shading influence stream temperature in mountainous streams and can be identified with FO‐DTS under suitable conditions. The results improve our understanding of stream temperatures (in the hyporheic zone) and provide important information on how to improve hydrological modeling.

Effect of topography and hydrological change on solute transport at the sediment-water interface in seasonal lakes

Study regionThe Poyang Lake is located in northern Jiangxi Province, which is the largest fresh water in China. The upstream connection with rivers and downstream access to the Yangtze River create seasonal hydrological regimes, resulting in over 100 seasonal lakes within the floodplain. These lakes provide important habitats for migratory birds to forage and nest during dry seasons, and contribute to floodwater regulation during wet seasons, maintaining lake ecosystem. Study focusThis study has combined laboratory experiments and numerical simulations to mechanically analyze the effect of the depth, width, slope of seasonal lakes, water level amplitude and dry season periods on water recharge patterns, exchange fluxes and solute transport characteristics at the sediment-water interface. New hydrological insights for the regionReducing the lake area by 33% through adjustments in depth or slope significantly reduces solute transport range (12.81% and 6.5% within 120 min) and high velocity area. The sensitivity of the solute amount in the lakebed to depth is the highest, followed by slope and width. Decreasing water level amplitude during dry seasons increases the flow velocity within the beach, facilitating short-term solute transport towards the lakebed. Extending the duration of dry periods increases cumulative flux of solutes entering the lakebed. These findings contribute to the ecological restoration efforts in floodplains and water pollution control measures.

Evaluation of fate of organic matter in sediment through microcosm experiments

AbstractLaboratory microcosm experiments help to understand the degradation pattern of different sources derived from organic matter (OM) at the sediment–water interface and relate it to field processes. Microcosm experiments were carried out for 65 days to assess the degradation of organic materials such as diatoms, zooplankton, and mangrove leaves using source‐specific fatty acid (FA) biomarkers. The viable bacterial population in the microcosm sediment was low on day 1, but on day 3, it increased substantially by two to threefold in all the treatments. An increase in the bacterial population resulted in a decrease in the FAs specific to organic materials during the initial incubation phase (10 days), suggesting the degradation of organic materials derived from different sources. The FAs specific to diatoms showed faster degradation when compared to zooplankton and mangrove‐specific FAs. The degradation of FAs was influenced by the nature of the source material, unsaturation of FAs, and the sediment type. Sandy sediment facilitated higher degradation of diatom and zooplankton‐specific FAs, whereas mangrove‐specific FAs showed higher degradation in silty‐clay sediment. Thus, bacterial community composition coupled with the habitat characteristics, the OM composition, and the grain size of the sediment, influenced the degradation of FAs. The degradation of mangrove‐specific long‐chain FAs was ~1.11–2.5 times higher when spiked with plankton‐derived labile OM from mixed sources, which otherwise took a longer time for degradation pointing toward co‐metabolism (priming effect), which could play a significant role in the cycling of terrestrial plant‐derived OM in an estuarine ecosystem.

Response of sediment microbial communities to the flow effect of the triangular artificial reef: A simulation-based experimental study

Artificial reefs (ARs), as an important tool for habitat restoration, play significant impacts on benthic microbial ecosystems. This study utilized 16S rRNA gene sequencing technology and computational fluid dynamics (CFD) flow simulation to investigate the effects of flow field distribution around ARs on microbial community structure. The results revealed distinct regional distribution patterns of microbial communities affected by different hydrodynamic conditions. Flow velocity and flow regime of water in sediment-water interface shaped the microbial community structure. The diversity and richness in R–HF were significantly decreased compared to other five regions (p < 0.05). At the phyla and OUT levels, most abundant taxa (1>%) showed an enrichment trend in R–HB. However, more than half of differentially abundant taxa were enriched in R–HB, which was significantly correlated with organic matter (OM). Bugbase phenotypic predictions indicated a low abundance of the anaerobic phenotype in R–HF and a high abundance of the biofilm-forming phenotype in R–HB.

Diagenetic iron-oxyhydroxides formed in suboxic to anoxic mine-impacted lake sediments near Sudbury, Ontario

Iron-oxyhydroxides are common in lake sediments, typically forming in oxidizing conditions near the sediment-water interface. However, in the mine-tailings-impacted sediment delta at Long Lake near Sudbury, Ontario, diagenetic Fe-oxyhydroxides are formed in suboxic-anoxic conditions. Geochemical and mineralogical techniques were applied to investigate the diagenetic transformations of tailings-derived oxidation products following burial in the sediment delta. Two sets of vertical cores were collected, one from a shallow-water location in the sediment delta near the lake shore and the other from a deeper-water location, approximately 90 m north from the mouth of the active channel. One core from each location was sectioned in the field into 0.1 m intervals using an anaerobic globe bag and porewater was extracted for aqueous geochemical analysis. The second core from each location was dried anaerobically and sub-sampled for solid-phase geochemical and mineralogical analyses. The aqueous concentrations of As, Fe, and SO4 are elevated near the sediment-water interface at both locations but at the shallow location they decline to the lowest observed concentrations at depth in the natural sediment. The decline in their concentrations may be enhanced by bacterial SO4 reduction and precipitation of Fe- and As-sulfides which were observed in mineralogical analysis. The mine-impacted sediment consists of numerous fragments of tailings-derived ferric-arsenate-cemented crusts. Compared to the cemented crusts that occur in the tailings, these fragments exhibit partial-dissolution features and SEM-EDS analyses demonstrate that they have relatively low As/Fe ratios, suggesting the occurrence of selective As(V) dissolution during diagenesis. Diagenetic Fe-oxyhydroxides occur throughout the mine-impacted sediment, including zones that contain diagenetic Fe- and As-sulfides, suggesting they may have formed in suboxic-anoxic conditions. They occur proximal to, but separate from, the fragments of tailings-derived crusts and display diverse morphologies, including what may be a previously unreported spherulitic form. Individual Fe-oxyhydroxides range in size from nm to μm but they mostly occur in delicate clusters suggesting they are autochthonous. Compared to the cemented crusts from the tailings, they contain very small amounts of As. Analysis of one spherule indicates it contains lepidocrocite microcrystals with amorphous SiO2.nH2O in the interstitial spaces. The microcrystals contain a mixture of Fe(III) and Fe(II), with Fe(III)/ΣFe = approximately 0.8. We interpret them to have formed by burst nucleation from Fe(III)-supersaturated solution, with subsequent aggregation of crystallites to form spherules.

Authigenic carbonate and native sulfur formation in Messinian (upper Miocene) marine sediments: Sedimentological, petrographical and geochemical constraints

Carbonate concretions accompanied by elemental sulfur were found in an early Messinian (Late Miocene) marine succession of NW Italy. The rocks were studied with an integrated approach including sedimentological, petrographical, stable isotope (carbon, oxygen, and multiple sulfur isotopes), and lipid biomarker analyses. Unlike other examples from Messinian strata of the Mediterranean area, the studied carbonate and sulfur concretions did not derive from the diagenetic replacement of sulfate minerals. Three lithofacies were distinguished: a) laminated lithofacies representing aphotic carbonate stromatolites enclosing fossils of filamentous sulfide-oxidizing bacteria; b) brecciated lithofacies deriving from the brecciation of carbonate stromatolites by mud injections; c) sulfur-bearing lithofacies deriving from the precipitation of thin laminae of elemental sulfur at or close to the sediment-water interface. The carbon and oxygen stable isotope composition of authigenic carbonate minerals and lipid biomarkers indicate that the initial formation of the laminated lithofacies was favored by organoclastic sulfate reduction in the shallow subsurface close to the sediment-water interface, producing sulfide that sustained dense microbial mats of sulfide-oxidizing bacteria at the seafloor. Calcification of the mats and consequent formation of stromatolites were possibly favored by nitrate-driven sulfide oxidation at the seafloor. The subsequent brecciation of the stromatolites was apparently the consequence of sulfate-driven anaerobic oxidation of methane (SD-AOM) in an underlying sulfate-methane transition zone (SMTZ). Focused fluid flow from below, possibly resulting from destabilization of gas hydrates, was not only responsible for the brecciation of the stromatolites, but also for the delivery of bicarbonate ions and the consequent precipitation of additional, 13C-depleted calcite (δ13C values as low as −52‰). Along with bicarbonate, also hydrogen sulfide was produced by SD-AOM at the SMTZ and was transported upwards. The oxidation of hydrogen sulfide at or close to the seafloor promoted the formation of elemental sulfur characterized by δ34S values and Δ33S values close to coeval seawater sulfate.

Reduction of nutrient fluxes across the sediment–water interface and nutrient accumulation in lotus-fish co-culture aquaculture ponds

Reduction of nutrient fluxes across the sediment–water interface and nutrient accumulation in lotus-fish co-culture aquaculture ponds

Sediment-redox dynamics in an oligotrophic deep-water lake in Tierra del Fuego: insights from Fe isotopes

For long time in the history of Earth, ferruginous conditions governed the oceans. With the rise of oxygen during the Proterozoic era and the subsequent evolution of living organisms, worldwide deposition of iron formations occurred. These sedimentary units reveal the transition into oxic oceans, passing by local and transitory euxinic conditions, especially in coastal shelves. Constraining the iron cycle and the biogeochemical processes occurring in present and past ferruginous basins helps answering some of the question regarding global oxygenation, the evolution of life and past climate changes. Therefore, Fe speciation and Fe isotopes in both Proterozoic and recent sedimentary records have been widely used to reconstruct past basin dynamics and redox conditions in the sediment–water interface. However, sedimentation and early diagenesis can alter paleoredox proxies and their primary climate signals. In this work, we disentangled alteration processes occurring at the redox front below the sediment–water interface of a ventilated deep-water lake (Lago Fagnano, Argentina/Chile). A sequential extraction protocol was applied to characterize two reactive Fe pools: Fe oxyhydroxides and reduced iron. Subsequently, Fe isotopes were constrained to determine the main processes mobilizing Fe. At the redox front, ferric minerals reach a δ56Fe value of − 1.3‰ resulting from oxidation of dissolved Fe likely following a Rayleigh distillation effect. Dissolved Fe is produced right below via Fe reduction, as shown by the low ferric Fe content. Our observations delineate a redox cycle and a redox horizon undergoing constant upward migration, initiated by regular sedimentation. However, during events of increased rapid sedimentation (e.g., seismites) this dynamic cycle is interrupted inducing full or partial preservation of the Fe-rich redox front. In such case, oxidation of dissolved Fe is interrupted and can be recycled in ferrous minerals, such as Fe monosulfides and amorphous phases with δ56Fe values down to − 1.7 ‰. These findings have significant implications for the recording of biogeochemical cycles in the geological past, the use of Fe isotopes in freshwater-lake sediments for paleoclimate studies, and the progress of our knowledge regarding the geochemistry of past oceans.

A microcosm evaluation of metal cycling in an urbanized contaminated estuary varying with oxic-hypoxic-anoxic-reoxic transition: Behavior, fluxes, and mechanism

Water hypoxia and metal pollution are commonly co-existed in urbanized estuaries. This study focuses on the effect of an extended dissolved oxygen (DO) full-life dynamics (86 days) on metal behavior across the sediment-water interface through laboratory microcosms from two typical zones in Pearl River Estuary. Combining our time-series results of concentrations and fluxes, it showed that Co, Ni, and Zn consistently presented a release-precipitation-release trajectory with an oxic-hypoxic-anoxic-reoxic transition, characterized with highly variable behavior in the hypoxic-anoxic hotmoments. In parallel, changing DO dynamics significantly activated a repartitioning process of Co, Ni, and Zn among several species and elevated their risk in sediments, promoting the formation of more labile species in the 0–10 mm hotspots, where metals sensitively responded. Over DO transition, metal cycling was tightly co-related with Fe, Mn, and S elements. It was found that Mn was dominated in low oxygen-hypoxic period, but switched to S and Fe in anoxic stage, limiting sustained metal liberation to overlying water. Enlarging this experiment to practice, released Zn fluxes from sediments in hypoxic summer could contribute about ∼2.0% to their stocks in water column, while increase to 20% (1 m bottom water) in highly-stratified zones. This study has certain significance in understanding the long-term metal behavior and fate in estuarine regions, even lakes and reservoirs.

Assessment of two non-invasive techniques for measuring turbulent benthic fluxes in a shallow lake

Benthic fluxes refer to the exchange rates of nutrients and other compounds between the water column and the sediment bed in aquatic ecosystems. Their quantification contributes to our understanding of aquatic ecosystem functioning. Near-bed hydrodynamics plays an important role at the sediment-water interface, especially in shallow lakes, but it is poorly considered by traditional measuring techniques of flux quantification, such as sediment incubations. Thus, alternative sampling techniques are needed to characterize key benthic fluxes under in-situ hydrodynamic conditions. This study aimed to evaluate the performance of two promising methods: relaxed eddy accumulation (REA) and mass transfer coefficient (MTC). We applied them in a hyper-eutrophic shallow lake to measure the fluxes of ammonium, phosphate, iron, and manganese ions. For the first time, REA revealed hourly nutrient flux variations, indicating a strong lake biogeochemical dynamics at short time-scales. Daily average fluxes are of similar orders of magnitude for REA and MTC for ammonium (24 and 42 mmol m2 d−1), manganese (1.0 and 0.8), and iron (0.8 and 0.7) ions. They are one order of magnitude higher than fluxes estimated from sediment incubations, due to the difficulty in reproducing in-situ oxygen and hydrodynamic conditions in the laboratory. Although the accuracy of both techniques needs to be improved, the results revealed their potential: REA follows the short-term biogeochemical dynamics of sediments, while MTC could be widely used for lake monitoring because of its simpler implementation.

Detecting changes in seafloor elevation in sandy coastal environments using low-cost opensource tooling

Knowledge of sediment erosion and deposition can be useful for a variety of engineering, marine science, and environmental applications, but collecting detailed time-series measurements of the sediment–water interface can be challenging, particularly in coastal marine environments. We developed economical and open-source sediment level loggers to record sediment–water interface time-series data with accuracy up to 1 cm. The logger is composed of a programmable Circuit-Python (or Arduino) microcontroller and “breakout boards” that attach to a specially designed printed circuit board (PCB) and an array of evenly spaced photoresistors enclosed in a robust waterproof housing. These instruments were paired with temperature sensors in a study off the coast of Charleston, SC in the South Atlantic Bight where heat was used as a tracer to detect the flow of porewater in the permeable coastal sediments. This approach requires accurate knowledge of the depth of temperature sensors relative to the sediment–water interface. In this application, improved knowledge of the elevation of the sediment–water interface elevation data from the sediment level loggers reduced average root mean squared errors in modeling submarine groundwater discharge by as much as 25 %. The sediment level loggers can be easily installed, withstand long deployment times, and provide long-term recording abilities suitable for a range of environments.

Influence of bank slope on sinuosity-driven hyporheic exchange flow and residence time distribution during a dynamic flood event

Abstract. This study uses a reduced-order two-dimensional (2-D) horizontal model to investigate the influence of the riverbank slope on the sinuosity-driven hyporheic exchange process along sloping alluvial riverbanks during a transient flood event. The deformed geometry method (DGM) is applied to quantify the displacement of the sediment–water interface (SWI) along the sloping riverbank during river stage fluctuation. This new modeling approach serves as the initial step focusing on the impact of the bank slope on the hyporheic exchange flux (HEF) and the residence time distribution (RTD) of pore water in the fluvial aquifer for a sinuosity-driven river corridor. Several controlling factors, including sinuosity, alluvial valley slope, river flow advective forcing and duration of flow, are incorporated into the model to investigate the effects of bank slope on aquifers of variable hydraulic transmissivity. Compared to simulations of a vertical riverbank, sloping riverbanks were found to increase the HEF. For sloping riverbanks, the hyporheic zone (HZ) encompasses a larger area and penetrated deeper into the alluvial aquifer, especially in aquifers with smaller transmissivity (i.e., due to increased hydraulic conductivity or reduced specific yield). Furthermore, consideration of sloping banks as compared to a vertical riverbank can lead to both underestimation and overestimation of the pore water travel time. The impact of bank slope on residence time was more pronounced during a flood event for high-transmissivity aquifer conditions, while it had a long-lasting influence after the flood event in lower-transmissivity aquifers. Consequently, the impact of bank slope decreases the travel time of water discharging into the river relative to base flow conditions. These findings highlight the need for (re)consideration of the importance of complex riverbank morphology conceptualization in numerical models when accounting for the HEF and RTD. The results have potential implications for river management and restoration and the management of river and groundwater pollution.

Active microbial communities facilitate carbon turnover in brine pools found in the deep Southeastern Mediterranean Sea

Discharge of gas-rich brines fuels productive chemosynthetic ecosystems in the deep sea. In these salty, methanic and sulfidic brines, microbial communities adapt to specific niches along the physicochemical gradients. However, the molecular mechanisms that underpin these adaptations are not fully known. Using metagenomics, we investigated the dense (∼106 cell ml−1) microbial communities that occupy small deep-sea brine pools found in the Southeastern Mediterranean Sea (1150 m water depth, ∼22 °C, ∼60 PSU salinity, sulfide, methane, ammonia reaching millimolar levels, and oxygen usually depleted), reaching high productivity rates of 685 μg C L−1 d−1 ex-situ. We curated 266 metagenome-assembled genomes of bacteria and archaea from the several pools and adjacent sediment-water interface, highlighting the dominance of a single Sulfurimonas, which likely fuels its autotrophy using sulfide oxidation or inorganic sulfur disproportionation. This lineage may be dominant in its niche due to genome streamlining, limiting its metabolic repertoire, particularly by using a single variant of sulfide: quinone oxidoreductase. These primary producers co-exist with ANME-2c archaea that catalyze the anaerobic oxidation of methane. Other lineages can degrade the necromass aerobically (Halomonas and Alcanivorax), or anaerobically through fermentation of macromolecules (e.g., Caldatribacteriota, Bipolaricaulia, Chloroflexota, etc). These low-abundance organisms likely support the autotrophs, providing energy-rich H2, and vital organics such as vitamin B12.

Dynamics of nitrogen genes in intertidal sediments of Darwin Harbour and their connection to N-biogeochemistry

Microbial mediated nitrogen (N) transformation is subject to multiple controlling factors such as prevailing physical and chemical conditions, and little is known about these processes in sediments of wet-dry tropical macrotidal systems such as Darwin Harbour in North Australia. To understand key transformations, we assessed the association between the relative abundance of nitrogen cycling genes with trophic status, sediment partition and benthic nitrogen fluxes in Darwin Harbour. We analysed nitrogen cycling gene abundance using a functional gene microarray and quantitative PCRs targeting the denitrification gene (nosZ) and archaeal ammonia oxidation (AOA.1). We found a significant negative correlation between archaeal ammonia oxidation and silicate flux (P = 0.004), an indicator for diatom and benthic microalgal activity. It is suggested that the degradation of the diatomaceous organic matter generates localised anoxic conditions and inhibition of nitrification. Abundance of the nosZ gene was negatively correlated with nutrient load. The lowest nosZ gene levels were in hyper-eutrophic tidal creeks with anoxic conditions and increased levels of sulphide limiting the coupling of nitrification-denitrification (P = 0.016). Significantly higher levels of nosZ genes were measured in the surface (top 2 cm) compared to bulk sediment (top 10 cm) and there was a positive association with di-nitrogen flux (N2) in surface (P = 0.024) but not bulk sediment. This suggests that denitrifiers are most active in surficial sediment at the sediment-water interface. Elevated levels of nosZ genes also occurred in the sediments of tidal creek mouths and mudflats with these depositional zones combining the diffuse and seaward supply of nitrogen and carbon supporting denitrifiers. N-cycle molecular assays using surface sediments show promise as a rapid monitoring technique for impact assessment and measuring ecosystem function. This is particularly pertinent for tropical macrotidal systems where systematic monitoring is sparse and in many cases challenged by climatic extremes and remoteness.