The evolution of microbial community were monitored using culture-dependent and independent methods such as viable plate count and Denaturing Gradient Gel Electrophoresis (DGGE) to describe the influence of fungicides on microbial diversity. Relation between microorganisms variation and fungicide degradation was investigated to improve the system efficiency. Results showed a good capability of biomix to degrade pesticides. At the end of the experimentation time the concentration of most of pesticides was nearly to the complete degradation. No significant differences were observed in culture-dependent heterotrophic bacterial and fungal evolution during the treatment. DGGE analysis of bacterial community after two consecutive treatments with PC+DF and after the treatment with AZ+CY+FL showed the highest differences between treated samples and their controls. DGGE analysis showed a strong reduction of fungal community after PC+DF addition (10 th and 23 th day). At 64 th day fungicides were almost degraded and an evident enhancement of fungal biodiversity with the appearance of new species was shown. Interestingly, at the end of the experiment the microbial community exhibited a strong similarity between treated and untreated sample indicating that the variations of microbial community was only temporally.
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