Bathymetric data are crucial for benthic monitoring in coastal areas but are traditionally obtained through costly and geographically limited acoustic methods. This study uses satellite-derived bathymetry (SDB) in the Eastern Mediterranean, focusing on the Cretan Sea in Greece. It explores how variations in water surface optical properties affect SDB models over four years (2019–2022), using Sentinel-2 satellite data. The research covers two areas with contrasting features: the Chania Gulf and the open waters around Chrissi Island. Three methodologies were tested: the band-ratio method, the linear-logarithmic method, and an inherent optical properties linear model. Significant spatiotemporal variations in the SDB models were found, due to seasonal changes in water surface properties, such as temperature and suspended organic materials. Linear optical properties-based methods performed best, achieving a mean RMSE close to 1 m, slightly outperforming the ratio-based method. The logarithmic method was less effective, with RMSE values ranging from 1.3 to 1.5 m. A preliminary Kalman filter (KF) analysis increased RMSE to the decimeter level. This study demonstrates the impact of water surface optical properties on SDB models. It highlights the value of SDB for cost-effective, high-resolution coastal mapping in complex coastlines like those in Greece.
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