Diversity Of Microorganisms Research Articles

Investigation of the microbial community structures and function in subsurface sediments

In this study, microbial community structures were analyzed in a 5-meter-long sediment core collected from Tennessee, USA, to reveal the diversity and ecological roles of underground microorganisms. Using advanced molecular biology techniques, we classified the microorganisms in the samples and analyzed their distribution in different sedimentary layers. The results show that the microbial communities have obvious stratified distribution characteristics and are closely related to the physical and chemical properties of the sediments. This study improves our understanding of subsurface microbial ecology.

Antioxidant, Antimicrobial, Anticancer, and Molecular Docking Insights into Pancratium maritimum Seeds and Flowers: A Phytochemical Approach.

This study investigates the antioxidant, antimicrobial, and anticancer properties of Pancratium maritimum L. in Sp. Pl.: 291 (1753) seeds and flowers. Antioxidant activity was assessed using DPPH free radical scavenging and iron chelation assays. Antimicrobial evaluations assessed the efficacy of the extracts against diverse microorganisms. Cell viability assays were conducted on the dukes c colon cancer (SW480), while gas chromatography-mass spectrometry (GC-MS) analysis facilitated the identification of bioactive compounds. The ethanol extract of P. maritimum seeds exhibited a total phenolic content of 296.89±14.53 mg GAE/g extract DW and a total flavonoid content of 361.03±20.18 mg QE/g extract DW. Conversely, the flower extract showed a total phenolic content of 95.03±7.22 mg GAE/g extract DW and a total flavonoid content of 272.12±16.42 mg QE/g extract DW. As a result, the ethanol extract of P. maritimum seeds contains higher phenolic and flavonoid contents than the flower extract. Antimicrobial evaluations demonstrated significant inhibitory effects of both seed and flower extracts, with minimum inhibitory concentration (MIC) values ranging from 25 to >50 mg/mL. Notably, the seed extract showed greater activity against E. coli and C. krusei. GC-MS analysis identified 18 bioactive compounds in the seed extract and 16 in the flower extract, with crucial components including ethyl oleate and 5-hydroxymethylfurfural. Additionally, cell viability assays revealed that ethanol extracts from seeds and flowers significantly reduced SW480 cell viability, particularly at doses of 750 μg/mL and 250 μg/mL, respectively. These findings underscore the therapeutic potential of P. maritimum in terms of its antioxidant, antimicrobial, and anticancer properties, highlighting its value as a natural source of antioxidants and antimicrobial agents. Furthermore, the molecular docking study emphasises strong binding interactions of key compounds, particularly ethyl oleate and hexadecanoic acid ethyl ester, with the human STARD10 protein. The biological interactions and health implications of P. maritimum provide a significant foundation for future research in drug development and therapeutic applications.

Genomic, Molecular Networking-Based Metabolomic, and Bioactivity Profiling of Actinobacteria from Undisturbed Caves in Pakistan.

Caves are a unique ecosystem that harbor diverse microorganisms, and provide a challenging environment to the dwelling microbial communities, which may boost gene expression and can lead to the production of inimitable bioactive natural products. In this study, we obtained 59 actinobacteria from four different caves located in Bahadurkhel, District Karak, Pakistan. On the basis of taxonomic characteristics, 30 isolates were selected and screened for secondary metabolites production and bioactivity profiling. The extracts of all the isolates exhibited promising antibacterial activity against several pathogenic bacteria, with the best outcome seen in the extract of isolate SNK 21. The metabolomic analysis of the extracts by LC-MS/MS-based molecular networking and whole genome sequencing (WGS) followed by antiSMASH analysis revealed the presence of diverse secondary metabolites and biosynthetic gene clusters (BGCs) in SNK 21. Purification of compounds by manual chromatography, HPLC, and characterization by NMR, HR-MS, led to the identification of the active compounds, actinomycin D and its isomer. In addition, metabolomic analysis and genome mining of morphologically distinct isolates, SNK 202 and SNK 329, also showed diverse secondary metabolites and BGCs, underscoring the potential of actinobacteria from undisturbed caves in Pakistan as a new source of bioactive compounds.

RNA control of reverse transcription in a diversity-generating retroelement.

Diversity-generating retroelements (DGRs) create massive protein sequence variation (up to 1030)1 in ecologically diverse microorganisms. A recent survey identified around 31,000 DGRs from more than 1,500 bacterial and archaeal genera, constituting more than 90 environment types2. DGRs are especially enriched in the human gut microbiome2,3 and nano-sized microorganisms that seem to comprise most microbial life and maintain DGRs despite reduced genomes4,5. DGRs are also implicated in the emergence of multicellularity6,7. Variation occurs during reverse transcription of a protein-encoding RNA template coupled to misincorporation at adenosines. In the prototypical Bordetella bacteriophage DGR, the template must be surrounded by upstream and downstream RNA segments for complementary DNA synthesis to be carried out by a complex of the DGR reverse transcriptase bRT and associated protein Avd. The function of the surrounding RNA was unknown. Here we show through cryogenic electron microscopy that this RNA envelops bRT and lies over the barrel-shaped Avd, forming an intimate ribonucleoprotein. An abundance of essential interactions in the ribonucleoprotein precisely position an RNA homoduplex in the bRT active site for initiation of reverse transcription. Our results explain how the surrounding RNA primes complementary DNA synthesis, promotes processivity, terminates polymerization and strictly limits mutagenesis to specific proteins through mechanisms that are probably conserved in DGRs belonging to distant taxa.

Assessment In Depth on the Anti‐seasonal Water Fluctuations and Vegetation Dynamic Trends in a Plateau Lake, Southern China

ABSTRACTHuman activities, such as dam construction for flow regulation, modify the natural hydrological regimes of lakes and rivers. The altered flow regimes substantially influence plant growth in the water level fluctuation zone, impacting both vegetation patterns and success. The relationships among above‐ground vegetation, soil seed bank and soil microorganisms remain unexamined. This study was performed in Lashi Lake, a plateau lake in southern China characterized by anti‐seasonal water level fluctuations, and Jizi Reservoir, a reference site exhibiting natural seasonal water level variations. The primary aim was to assess the distribution pattern of plant, soil seed bank and their corresponding soil microorganism over the three flood gradients, and the relationships among them were analysed simultaneously. The findings indicated that both plant community variety and seed bank diminished as the area of soil flooding increased. The soil seed bank was a strong indication of community diversity, particularly throughout late spring and late summer. Additionally, significant correlations between the alpha diversity of soil microorganisms and the concentrations of soil carbon, nitrogen and moisture were found across the flooding gradients. The organization and diversity of soil microbial communities were significantly correlated with the alpha diversity of the plant community and the soil seed bank. The findings demonstrate that both seed banks and soil bacteria play a dynamic role in the restoration of vegetation in areas experiencing anti‐seasonal water fluctuations.

Aguamiel, a Traditional Mexican Beverage: A Review of Its Nutritional Composition, Health Effects and Conservation.

Aguamiel is the sap extracted from various species of maguey (Agave spp.). This liquid is highly prized in central Mexico for its pleasing sensory qualities and nutritional value. Understanding the composition of aguamiel is crucial as it may offer beneficial effects for human health. Reports have indicated its significance as a source of essential amino acids, vitamins, minerals, and fructooligosaccharides with prebiotic potential. Additionally, aguamiel can harbor diverse microorganisms, including lactic acid bacteria (Lactococcus and Leuconostoc spp.) and yeasts, contributing antioxidant, nutritional, prebiotic, and probiotic properties. However, aguamiel is prone to rapid fermentation due to its nature, which can alter its sensory and nutritional characteristics. This review provides insight into the broad nutritional composition, microbial diversity, and metabolites beneficial to the human health of fresh aguamiel. At the same time, it reviews the technologies applied to aguamiel to preserve its nutritional properties and functional metabolites and extend its shelf life. Thus, the data included in this document may lead to greater beverage consumption and further research to find new conservation alternatives that change its organoleptic and functional properties as little as possible.

Silica hydrogels as a carbon-free solid media for the culture of diverse organisms

Abstract Bacteriological agar plates are commonly used to carry out experiments for the selective growth of microorganisms and the isolation of single-strain colonies. However, the presence of agar itself may be a confounding factor since it may serve as a source of carbon and energy. Moreover, there have been ongoing constraints on the production and sourcing of agar. These concerns have led to an interest in the development of agar substitutes. Silica hydrogels are entirely inorganic carbon-free polymeric materials that lack any source of micronutrients. Herein, a revised method for the preparation of silica hydrogels as a solid culture medium is reported. These gels can be formulated with a range of nutrient-rich or minimal media supplemented with various carbon sources, and can be manipulated in the same manner as agar gels. Their use for the culture and isolation of diverse microorganisms, including both gram-positive and gram-negative bacteria, yeast, and filamentous fungi is demonstrated. These silica hydrogels supplemented with either antibiotics or other molecules of interest can also be used for microbial selection experiments.

Distinct spatiotemporal patterns between fungal alpha and beta diversity of soil-plant continuum in rubber tree.

Plants harbor diverse microorganisms in both belowground and aboveground compartments, which play a vital role in plant nitrogen supply and growth promotion. Understanding the spatiotemporal patterns of microbial communities is a prerequisite for harnessing them to promote plant growth. In this study, we show that the alpha and beta diversity of soil-plant continuum in rubber tree exhibited distinct spatiotemporal pattern. Alpha diversity is highly dependent on seasonal changes, while beta diversity only showed a geographical variation pattern. Climatic factors were the most important factors in shaping fungal alpha diversity. Leaf phosphorus (P) and soil available potassium (AK) were major drivers to induce geographical variation.

A comprehensive review on microbial hyaluronan-degrading enzymes: from virulence factors to biotechnological tools.

Hyaluronan (HA), a natural high molecular weight polysaccharide, has extensive applications in cosmetology and medical treatment. Hyaluronan-degrading enzymes (Hyals) act as molecular scissors that cleave HA by breaking the glucosidic linkage. Hyals are present in diverse organisms, including vertebrates, invertebrates and microorganisms, and play momentous roles in biological processes. In recent years, microbial Hyals (mHyals) have gained considerable attention for their exceptional performance in the production and processing of HA. Moreover, the applications of mHyals have been greatly extended to various biomedical fields. To explore the potential applications of mHyals, a thorough comprehension is imperative. In this context, this review systematically summarizes the sources, structures, mechanisms and enzymatic properties of mHyals and discusses their biological functions in host invasion, disease development, and regulation of intestinal flora. Furthermore, versatile applications inspired by their biological functions in medicine development, molecular biology, and industrial biotechnology are comprehensively reviewed. Finally, prospects are presented to emphasize the importance of exploration, expression and characterization of mHyals and the necessity of excavating their potential in biotechnological fields.

Diversity and Distribution of Methane Functional Microorganisms in Sedimentary Columns of Hongfeng Reservoir in Different Seasons.

Freshwater ecosystem is a significant natural source of CH4 emission in the atmosphere. To fully understand the dynamics of methane emissions in reservoirs, it is essential to grasp the temporal and vertical distribution patterns, as well as the factors that influence the methanogenic bacterial communities within the sediments. This study investigates the methane dynamics, carbon isotope fractionation (δ13CH4), and abundance of functional microorganisms along the geochemical gradient in the in situ sedimentary column of Hongfeng Reservoir (China). Notably, the methane concentration in sediment in summer ranged in 15.39-127.22µmol/L, which is twice as high as wintertime concentrations in the surface layer near the sediment-water interface (0-10cm depth). Illumina sequencing of the sediments identified 11 genera affiliated with methanogenic archaea, with dominant genus Methanosaeta reaching a relative abundance of 34.95% in summer. The total carbon (TOC) content in sedimentary columns in different seasons is positively correlated with Methanosarcina (P < 0.05). In addition, seasonal discrepancies are observed in the sediment profiles for total nitrogen (TN), sulfate (SO42-), and ferrous iron (Fe2+) concentrations. The concentration of total nitrogen (TN) is higher in summer than in winter. In summer, sulfate accumulates in the middle layer of the sedimentary column, while in winter, the maximum concentration of sulfate in the surface layer reaches 0.65mmol/L. These geochemical gradients drive the biological transformation of nitrogen, sulfur, and iron, may also be linked to the consumption of methane. Thus, it is established that the temporal and spatial dynamics of methanogenic communities in sediments significantly influence the fluctuations in methane release fluxes within reservoirs, highlighting the necessity to account for seasonal biological variations when assessing greenhouse gas emissions from reservoirs.

Gut microbiome-gut brain axis-depression: interconnection.

The relationship between the gut microbiome and mental health, particularly depression, has gained significant attention. This review explores the connection between microbial metabolites, dysbiosis, and depression. The gut microbiome, comprising diverse microorganisms, maintains physiological balance and influences health through the gut-brain axis, a communication pathway between the gut and the central nervous system. Dysbiosis, an imbalance in the gut microbiome, disrupts this axis and worsens depressive symptoms. Factors like diet, antibiotics, and lifestyle can cause this imbalance, leading to changes in microbial composition, metabolism, and immune responses. This imbalance can induce inflammation, disrupt neurotransmitter regulation, and affect hormonal and epigenetic processes, all linked to depression. Microbial metabolites, such as short-chain fatty acids and neurotransmitters, are key to gut-brain communication, influencing immune regulation and mood. The altered production of these metabolites is associated with depression. While progress has been made in understanding the gut-brain axis, more research is needed to clarify causative relationships and develop new treatments. The emerging field of psychobiotics and microbiome-targeted therapies shows promise for innovative depression treatments by harnessing the gut microbiome's potential. Epigenetic mechanisms, including DNA methylation and histone modifications, are crucial in how the gut microbiota impacts mental health. Understanding these mechanisms offers new prospects for preventing and treating depression through the gut-brain axis.

Lithium Coupled with C6-Carboxyl Improves the Efficacy of Oligoguluronate in DSS-Induced Ulcerative Colitis in C57BL/6J Mice.

Oligoguluronate lithium (OGLi) was prepared for the purpose of enhancing the anti-ulcerative colitis (UC) activities of OG, in which lithium (Li+) is coupled with the C6-carboxyl of G residue. The therapeutic effects of OGLi on dextran sulfate (DSS)-induced UC mice were investigated, and oligoguluronate sodium (OGNa) and lithium carbonate (LC) were used as contrasts. The effects of OGLi, OGNa and LC on the treatment of UC mice were studied by monitoring body weight change and evaluating colon length, the disease activity index (DAI), histopathological examination and gut microbiota regulation. The results showed that compared with OGNa and LC, OGLi significantly reduced the clinical symptoms and histopathological changes associated with UC in the acute model. It was worth noting that OGLi significantly changed the gut microbiota characteristics of the DSS-treated mice and corrected the typical dysbacteriosis of DSS-induced UC. This intervention resulted in increasing the abundance of norank_f_Muribaculaceae and Ileibacterium spp. while reducing the levels of Escherichia-Shigella spp. and Romboutsia spp. The OGLi could significantly increase the diversity of intestinal microorganisms in the short term. All of these discoveries demonstrate that lithium collaboratively enhances the anti-UC efficacy of OG, which will help to create OG-based drugs for the treatment of UC.

Communities of invertebrates and microorganisms in the soils of filtration fields of the Lgov sugar factory (Kursk region)

The composition of macro- and microbiota in soils formed in treatment facilities (filtration fields) of the sugar industry in the Chernozem zone of Russia was studied. Soil moisture and the abundance and diversity of organic and mineral substances entering treated plants with wastewater have a significant impact on communities of microorganisms and invertebrates. The macrofauna of the soils of periodically operating settling ponds (called checks, or carts) consists mainly of predators and phytophages; the soil of the checks that was decommissioned 45 years ago consists of saprophages, which were dominated by earthworms. All groups of macrofauna in the soils of filtration fields are characteristic of the soils of forest-steppe regions, while their numbers are significantly lower compared to the Chernozems under the oak groves of the Central Chernozem Reserve, but noticeably higher than in the surrounding arable Chernozems. The microflora in the soils of the filtration fields and the background Haplic Chernozem (Pachic) is identical in the composition of physiological groups, but differs in their number and distribution along the soil profile. Differences in the diversity and distribution of microorganisms in the studied soils depend on different water regimes, determined by the frequency and duration of exposure to wastewater and the input of sugar production waste enriched with calcium carbonate, organic matter and biophilic elements.

Supramolecular Switching-Enabled Quorum Sensing Trap for Pathogen-Specific Recognition and Eradication to Treat Enteritis.

Intestinal bacterial infections have become a significant threat to human health. However, the current typical antibiotic-based therapies not only contribute to drug resistance but also disrupt gut microbiota balance, resulting in additional adverse effects on life activities. There is an urgent need to develop new antibacterial materials that selectively eliminate pathogenic bacteria without disrupting beneficial bacterial communities or promoting drug resistance. Herein, we utilize bacterial quorum sensing (QS), a universal mechanism for regulating community behavior, to develop a supramolecular QS trap by encapsulating cucurbit[7]uril (CB[7]) on 1-vinyl-3-pentylimidazolium bromide ([VPIM]Br) to form a supramolecular switch ([VPIM]Br⊂CB[7]) through host-guest interactions followed by grafting it onto bacterial cell surfaces using atom transfer radical polymerization. Subsequently, the matched pathogens are recognized and aggregated through interbacterial QS signals. Furthermore, the addition of amantadine (AD) facilitates the release of [VPIM]Br by competitive binding of CB[7] on [VPIM]Br⊂CB[7] for sterilization. This QS trap specifically triggers the self-aggregation and efficient elimination of matched bacteria. The [VPIM]Br⊂CB[7]-based trap can increase the diversity and abundance of intestinal microorganisms in mice, effectively treating Escherichia coli K88-induced intestinal damage without perturbing gut microbiota balance. This supramolecular-switched QS trap opens up a promising avenue to specifically recognize and eradicate pathogens for the antibiotic-free treatment of intestinal bacterial infections and other inflammatory diseases.

Effects of Hyporheic Water Exchange on Microbial Community Structure and Function: A Case Study in the Beiluo River, Loess Plateau, China

ABSTRACT Microbial communities in riverine hyporheic zones provide essential ecosystem services. However, the mechanisms whereby they respond to hyporheic water exchange under different habitat stress conditions remain poorly understood. Therefore, investigating the impact of riverine hyporheic exchange on the microbial community composition and its potential ecological function is essential, particularly in the seasonal rivers of northern China. To elucidate the structure and function of hyporheic zone sediment microbial communities in response hyporheic exchange and environmental fluctuations, we examined associations by performing in situ falling‐head permeameter tests and eDNA techniques. The primary findings were as follows: (1) We detected variations in the spatial distribution patterns of streambed hydraulic conductivity (range, 0.055–3.490 m/day) and vertical fluxes (range, 1.886–342.0 mm/day) among different monitoring stations. (2) Microbial communities displayed compositional similarities and spatial heterogeneity. Stations with limited vertical exchange were characterised by reduced species diversity. (3) Prokaryotes showed better modularity characteristics with higher stability and functional diversity than eukaryotic communities. (4) Differences in the abundance of microbial metabolism and genetic functions were observed among different habitats. This study emphasises the significance of local hydrological patterns (such as downwelling) in maintaining riverine environmental elements and acting as hotspots for microbial diversity within the hyporheic zone. The heterogeneity of the hydrological patterns governing hyporheic water exchange can explain the abundance, species diversity and biogeochemical processes of microorganisms within this zone.

Pharmacological Approaches To Infectious Diseases Exploring Microbial Pathways For Enhanced Therapeutic Solutions

The problem of antibiotics resistance in healthcare is getting more and more noticeable and the look for alternative therapy is among the measures that we need to use against the infectious diseases. The review will focus on the new drug approaches which disrupt the microbial pathways and are expected to resolve this modern-day challenge. Conventional microorganism-killers are becoming less effective. A quest for alternative action must be undertaken. Three promising approaches are discussed: therapeutic modalities for instance, antimicrobial oligonucleotides, monoclonal antibodies, and phage therapy. Antimicrobial oligonucleotides are an altogether different category from other options as they work against a broad spectrum of organisms with the least development of resistance, making them a promising option. The phage therapy involving mutation might influence the bacteria's genes to become resistant, but it is a renewable and cost-effective strategy with the ability to fight against the biofilm-associated infections. Monoclonal antibodies although experiencing challenges to access bacteria of some variety’s toxoids, defeat them by getting to effective toxins and virulence factors. The discussion focused on multidimensional methods of fighting microorganisms which compatible with both physical and genetic diversity of microorganisms, and stress on the availability of scientific and financial support for these innovative treatments. Emphasizing the scope of revolutionary pharmacological solutions, this article helps come of new strategies for infectious disease treatment next time. Thus, the review reemphasizes the urgency of exploring microbial pathways to unveil advanced drug delivery solutions. It promotes further research and funding in the advent of new treatment approaches that are needed to combat antibiotic resistance and address the cast-iron health dilemma in this region.

Bacterial Diversity Profiles of Desert Sand and Salt Crusts from the Gran Desierto de Altar, Sonora, Mexico

The Gran Desierto de Altar, located in Sonora, Mexico, represents an arid region that offers an opportunity to study microbial life under extreme conditions. This study analyzed the bacterial diversity present in two distinct types of desert sediments: sand dunes (SDs) and salt crusts (SCs) by culture-dependent and culture-independent methods. Environmental DNA was obtained for 16S rRNA gene amplicon sequencing to obtain taxonomic information using QIIME2. In SD, the bacterial communities comprised 24 phyla, with Actinobacteriota (30–40%), Proteobacteria (22–27%), Bacteroidota (9–11%), Firmicutes (7–10%), and Chloroflexi (3–6%) emerging as the most abundant. Notably, in SC, the archaeal phylum Halobacterota was predominant (37–58%). SC hosted 12 bacterial phyla, the most abundant being Firmicutes (14–30%), Bacteroidota (3–24%), and Proteobacteria (1–12%). Bacteria belonging to the phylum Firmicutes, including Metabacillus niabensis, Bacillus subtilis, Bacillus licheniformis, and Alkalibacillus haloalkaliphilus, were isolated using nutrient and saline media. Overall, our findings indicate that the taxonomic composition of the samples analyzed from the Gran Desierto de Altar is consistent with that found in arid environments worldwide. This study provides a basis for future studies focusing on microbial diversity, genetic potentials, and resistance mechanisms of microorganisms from arid environments.

Bacterial Communities From Two Freshwater Aquaculture Systems in Northern Germany.

The microbial communities in aquaculture systems are primarily affected by changes in water quality, fish metabolism, feeding strategies and fish disease prevention treatments. Monitoring changes in aquatic microbiomes related to aquaculture activities is necessary to improve management strategies and reduce the environmental impact of aquaculture water discharge. This study assessed the effects of activities within two fish farms on water microbiome composition by analysing the water entering and leaving both systems. Additionally, pathogenic bacterial species associated with common fish diseases were identified. The abundance, diversity and identity of microorganisms were evaluated using 16S rRNA hypervariable gene region amplicon sequencing. Proteobacteria (38.2%) and Bacteroidetes (31.3%) were the most abundant phyla in all water samples. Changes in microbiome composition after passage through the fish tanks were observed in several taxa, such as Nitrospirae, Chloroflexi, Deferribacteres and Cyanobacteria. Flavobacterium sp. and Pseudomonas sp. were the predominant potential pathogens and heterotrophic bacteria detected in both farms. Several chemolithotrophic bacteria and archaea were found in the natural reservoir used for aquaculture activities, while water microbiomes in the aquaculture systems were generally dominated by heterotrophic organisms.

Innovative Organic Fertilizers and Cover Crops: Perspectives for Sustainable Agriculture in the Era of Climate Change and Organic Agriculture

Anthropogenic activities have resulted in land desertification in various regions of the world, leading to the degradation of critical soil characteristics such as organic matter (OM) content, nutrient stock, and prevailing biodiversity. Restoring such degraded soils through organic matter amendments and diversified crop rotations is thus an intrinsic part of organic farming. This review discusses a wide range of organic farming impacts on soil health and crop productivity by focusing on organic fertilizers and crop diversification. Conventional fertilizers were considered vital for agricultural production to harvest high crop yields. Nevertheless, they are now deemed as environmentally hazardous and an obstacle to sustainable agroecosystems due to intensive chemical inputs that damage the soil over time and have long-lasting impacts. Conventional fertilization results in nutrient depletion, loss of microbial diversity, organic matter reduction, and deterioration of physical characteristics of the soil. Conversely, organic fertilization makes use of naturally existing resources to improve soil health. Organic amendments such as biochar, manure, and fermented grass improve soil’s physical, chemical, and biological properties and promote the growth and diversity of beneficial soil microorganisms—important in nutrient cycling and soil stability. They facilitate the uptake of nutrients, hinder crop pathogen growth, mitigate heavy metals, and decompose xenobiotic organic substances. Moreover, growing cover crops is also a major strategy to improve soil health. Diversified crop rotation with combinatorial use of organic fertilizers may improve soil health and agricultural yields without any detrimental impacts on the environment and soil, ensuring sustainable food production, safety, and security. This integrated approach contributes to minimizing the use of chemical fertilizers and their effects on environmental health. It also contributes to reducing agricultural inputs along with enhancing OM, soil microbial diversity and biomass, nitrogen fixation, and carbon sequestration. Therefore, cover crops and organic fertilization may offer sustainable agroecosystems and climate change mitigation.

Identification of a PET hydrolytic enzyme from the human gut microbiome unveils potential plastic biodegradation in human digestive tract.

Widespread use of polyethylene terephthalate (PET) plastics and their recycling challenges have led to substantial accumulation of PET wastes in global environments, with inevitable consequences for their entry into the food chains. Recent studies have increasingly documented the ingestion of microplastics by humans through food and beverages. However, the fate of these microplastics within the gastrointestinal tract, particularly the role of the human gut microbiota, remains inadequately understood. To address this knowledge gap, we employed a bioinformatics workflow integrated with functional verification to investigate the PET digestion/degradation capabilities of intestinal microorganisms. This approach identified a novel PET hydrolase-HGMP01 from the human gut metagenome, which exhibits the capacity to hydrolyze PET nanoparticles. Moreover, comprehensive exploration for HGMP01 homologues in the human gut metagenome and metatranscriptome unveil their distribution in diverse intestinal microorganisms. This study provides biochemical evidence for an unforeseen role of human gut microbiome in plastic digestion, thus holding substantial implications for human health.