Variation In Feed Efficiency Research Articles

Ruminal Protozoal Populations of Angus Steers Differing in Feed Efficiency.

Simple SummaryThe rumen protozoa have been demonstrated to enhance methanogenesis and impact intraruminal recycling of microbial protein. However, they are also known to contribute to fiber degradation and the stabilization of ruminal pH changes. The apparent metabolic impact of ciliated protozoa in the rumen may contribute to the variation in feed efficiency. This study examined the relationship between the rumen protozoa and feed efficiency in beef steers. We monitored feed intake and body weight for a 70-day feed efficiency trial. Following the trial, rumen content was collected, protozoal DNA was extracted from the content, and the relationship between protozoa community diversity and species abundance with feed efficiency was examined. The ciliated protozoal community diversity differed between low- and high-feed efficient steers. Greater abundances of unidentified protozoa genera were detected in the low-feed efficient steers. These data suggest that unidentified protozoa and ciliated protozoal community diversity influence feed efficiency in beef steers. Feed accounts for as much as 70% of beef production costs, and improvement of the efficiency with which animals convert feed to product has the potential to have substantial financial impact on the beef industry. The rumen microbiome plays a key role in determining feed efficiency; however, previous studies of rumen microbiota have not focused on protozoal communities despite the estimation that these organisms represent approximately 50% of rumen content biomass. Protozoal communities participate in the regulation of bacterial populations and nitrogen cycling—key aspects of microbiome dynamics. The present study focused on identifying potential associations of protozoal community profiles with feed efficiency. Weaned steers (n = 50) 7 months of age weighing approximately 260 kg were adapted to a growing ration and GrowSafe for 2 weeks prior to a 70-day feed efficiency trial. The GrowSafe system is a feeding system that monitors feed intake in real time. Body weights were collected on the first day and then every 7 days of the feed efficiency trial, and on the final day, approximately 50 mL of rumen content were collected via orogastric tubing and frozen at −80 °C. Body weight and feed intake were used to calculate residual feed intake (RFI) as a measure of feed efficiency, and steers were categorized as high (n = 14) or low (n = 10) RFI based on ±0.5 standard deviations about the mean RFI. Microbial DNA was extracted, and the eukaryotic component profiled by amplification and sequencing of 18S genes using degenerate primers that can amplify this locus across a range of protists. The taxonomy of protozoal sequences was assigned using QIIME 1.9 and analyzed using QIIME and SAS 9.4 with significance determined at α ≤ 0.05. Greater abundances of unassigned taxa were associated with high-RFI steers (p = 0.03), indicating a need for further study to identify component protozoal species. Differences were observed between low- and high-RFI steers in protozoal community phylogenetic diversity, including weighted beta-diversity (p = 0.04), Faith’s phylogenetic diversity (p = 0.03), and observed Operational taxonomic unit (OTU) (p = 0.03). The unassigned taxa and differences in phylogenetic diversity of protozoal communities may contribute to divergences observed in feed efficiency phenotypes in beef steers.

Selection for lower residual feed intake in mice is accompanied by increased body fatness and lower activity but not lower metabolic rate

Context Mice bred to be genetically different in feed efficiency were used in this experiment designed to help improve our knowledge of the biological basis of variation in feed efficiency between individual animals. Aims This experiment used mice to explore the metabolic basis of genetic variation in feed efficiency in the growing animal. Methods Mice bred to differ in residual feed intake (RFI) recorded over a postweaning test were used. After 11 generations of divergent selection, mice in groups were tested for RFI from 6 to 8, 8 to 10, and 10 to 12 weeks of age, and measured for traits describing the ability to digest feed, body composition, protein turnover, basal and resting metabolic rate, and level of activity. Key results Compared with the low-RFI (high efficiency) line mice, high-RFI mice consumed 28% more feed per day over their RFI-test, were no heavier, were leaner (16% less total fat per unit of bodyweight), did not differ in the fractional synthesis rate of protein in skeletal muscle or in liver, and had similar basal metabolic rates at 33°C. On an energy basis, the selection lines did not differ in energy retained in body tissue gain, which represented only 1.8% of metabolisable energy intake. The remaining 98.2% was lost as heat. Of the processes measured contributing to the higher feed intake by the high-RFI mice, 47% of the extra feed consumed was lost in faeces and urine, activity was 84% higher and accounted for 24%, the cost of protein gain was 6% higher and accounted for 2%, and the energy cost of digesting and absorbing the extra feed consumed and basal heat production could have accounted for 11 and 15% each. Conclusions Selection for low RFI (high efficiency) in mice was accompanied by an increase in body fat, an improvement in the process of digestion, a lower rate of protein turnover and a much lower level of activity. Selection did not result in major change in basal metabolic rate. Implications This experiment with mice provided new information on the biological basis of genetic differences in feed efficiency. The experiment investigated the relative importance of major energy-consuming metabolic processes and was able to quantify the responses in protein turnover and level of activity, being responses in energy-consuming processes that have proven difficult to quantitatively demonstrate in large farm animals.

Ruminal microbiota is associated with feed-efficiency phenotype of fattening bulls fed high-concentrate diets

Abstract Context Improving feed efficiency in livestock production is of great importance to reduce feeding costs. Aims To examine the relationship between ruminal microbiota and variation in feed efficiency in beef cattle fed concentrate-based diets. Methods Residual feed intake of 389 fattening bulls, supplied with corn-based concentrate and forage ad libitum, was used to estimate animals’ feed efficiency. Faeces and ruminal fluid samples, from 48 bulls chosen at random, were collected to estimate their forage intake and to determine their apparent digestibility, ruminal fermentation and microbiota. Those animals with extreme values of feed efficiency (high-efficiency (HE, n = 12) and low-efficiency (LE, n = 13)) were subjected to further comparisons. Alpha biodiversity was calculated on the basis of the normalised sequence data. Beta diversity was approached through performing a canonical correspondence analysis based on log-transformed sequence data. Genera differential abundance was tested with an ANOVA-like differential expression analysis and genera interactions were determined applying the sparse correlations for compositional data technique. Key results No differences in dry matter intake were found between the two categories of feed efficiency (P = 0.699); however, HE animals had higher apparent digestibility of dry matter (P = 0.002), organic matter (P = 0.003) and crude protein (P = 0.043). The concentration of volatile fatty acids was unaffected by feed efficiency (P = 0.676) but butyrate proportion increased with time in LE animals (P = 0.047). Ruminal microbiota was different between HE and LE animals (P = 0.022); both α biodiversity and genera network connectance increased with time in LE bulls (P = 0.005 for Shannon index and P = 0.020 for Simpson index), which suggests that LE animals hosted a more robust ruminal microbiota. Certain genera usually related to high energy loss through methane production were found to establish more connections with other genera in LE animals’ rumen than in HE ones. Microbiota function capability suggested that methane metabolism was decreased in HE finishing bulls. Conclusions Rumen microbiota was associated with feed efficiency phenotypes in fattening bulls fed concentrate-based diets. Implications The possible trade-off between feed efficiency and robustness of ruminal microbiota should be taken into account for the optimisation of cattle production, especially in systems with intrinsic characteristics that may constitute a disturbance to rumen microbial community.

144 Rumen Fluid Metabolites as Potential Biomarkers of Feed Efficiency in Angus Steers

Abstract Beef cattle is the most consumed red meat in the United States, and the United States is the largest producer and consumer of beef cattle globally. Feed is one of the largest input costs for the beef cattle industry, accounting for 40–60% of the total input costs. Identifying methods for improving feed efficiency in beef cattle herds could result in decreased cost to both producers and consumers, as well as increased animal protein available for global consumption. Identification of feed efficiency biomarkers could aid in the selection of more feed-efficient animals. To identify potential biomarkers of feed efficiency, rumen fluid was collected from low- (n = 14) and high-RFI (n = 15) Angus steers based on RFI ± 0.5 SD around the mean following a 70d feed efficiency trial to determine rumen metabolites associated with variations in feed efficiency. Steers were 7 months of age, weighing 264±2.7 kg. Rumen fluid was collected via gastric tubing, filtered through a 0.22 µM syringe filter, extracted for metabolomic analysis using 0.1% formic acid in acetonitrile:water:methanol (2:2:1), and injected into the Dionex UltiMate 3000 UHPLC system with an Exactive Plus Orbitrap MS. Peaks for known metabolites were identified using MAVEN and analyzed using MetaboAnalyst 4.0 and SAS. Significance was determined using an α ≤ 0.05. Based on fold change (high/low RFI), eight metabolites were greater in low-RFI steers compared to high-RFI steers, including 3,4-dihydroxyphenylacetate, 4-pyridoxate, citraconate, hypoxanthine, succinate/methylmalonate, thymine, uracil, and xylose (P ≤ 0.05), while 12 metabolites differed by ≥ 2-fold. These metabolites were predominantly involved in amino acid and lipid metabolism. Rumen fluid metabolomes differed in steers of varying feed efficiencies. These metabolites may be used as biomarkers of feed efficiency and may provide insight as to factors contributing to differences in feed efficiency that may be exploited to improve feed efficiency in beef cattle herds.

(144) Rumen Fluid Metabolites as Potential Biomarkers of Feed Efficiency in Angus Steers

Abstract Beef cattle is the most consumed red meat in the United States, and the United States is the largest producer and consumer of beef cattle globally. Feed is one of the largest input costs for the beef cattle industry, accounting for 40–60% of the total input costs. Identifying methods for improving feed efficiency in beef cattle herds could result in decreased cost to both producers and consumers, as well as increased animal protein available for global consumption. Identification of feed efficiency biomarkers could aid in the selection of more feed-efficient animals. To identify potential biomarkers of feed efficiency, rumen fluid was collected from low- (n = 14) and high-RFI (n = 15) Angus steers based on RFI ± 0.5 SD around the mean following a 70d feed efficiency trial to determine rumen metabolites associated with variations in feed efficiency. Steers were 7 months of age, weighing 264±2.7 kg. Rumen fluid was collected via gastric tubing, filtered through a 0.22 µM syringe filter, extracted for metabolomic analysis using 0.1% formic acid in acetonitrile:water:methanol (2:2:1), and injected into the Dionex UltiMate 3000 UHPLC system with an Exactive Plus Orbitrap MS. Peaks for known metabolites were identified using MAVEN and analyzed using MetaboAnalyst 4.0 and SAS. Significance was determined using an α ≤ 0.05. Based on fold change (high/low RFI), eight metabolites were greater in low-RFI steers compared to high-RFI steers, including 3,4-dihydroxyphenylacetate, 4-pyridoxate, citraconate, hypoxanthine, succinate/methylmalonate, thymine, uracil, and xylose (P ≤ 0.05), while 12 metabolites differed by ≥ 2-fold. These metabolites were predominantly involved in amino acid and lipid metabolism. Rumen fluid metabolomes differed in steers of varying feed efficiencies. These metabolites may be used as biomarkers of feed efficiency and may provide insight as to factors contributing to differences in feed efficiency that may be exploited to improve feed efficiency in beef cattle herds.

143 Rumen Fluid Metabolites as Potential Biomarkers of Feed Efficiency in Angus Steers

Abstract Beef cattle is the most consumed red meat in the United States, and the United States is the largest producer and consumer of beef cattle globally. Feed is one of the largest input costs for the beef cattle industry, accounting for 40–60% of the total input costs. Identifying methods for improving feed efficiency in beef cattle herds could result in decreased cost to both producers and consumers, as well as increased animal protein available for global consumption. Identification of feed efficiency biomarkers could aid in the selection of more feed-efficient animals. To identify potential biomarkers of feed efficiency, rumen fluid was collected from low- (n = 14) and high-RFI (n = 15) Angus steers based on RFI ± 0.5 SD around the mean following a 70-d feed efficiency trial to determine rumen metabolites associated with variations in feed efficiency. Steers were 7 mo of age, weighing 264±2.7 kg. Rumen fluid was collected via gastric tubing, filtered through a 0.22 µM syringe filter, extracted for metabolomic analysis using 0.1% formic acid in acetonitrile:water:methanol (2:2:1), and injected into the Dionex UltiMate 3000 UHPLC system with an Exactive Plus Orbitrap MS. Peaks for known metabolites were identified using MAVEN and analyzed using MetaboAnalyst 4.0 and SAS. Significance was determined using an α ≤ 0.05. Based on fold change (high/low RFI), eight metabolites were greater in low-RFI steers compared to high-RFI steers, including 3,4-dihydroxyphenylacetate, 4-pyridoxate, citraconate, hypoxanthine, succinate/methylmalonate, thymine, uracil, and xylose (P ≤ 0.05), while 12 metabolites differed by ≥ 2-fold. These metabolites were predominantly involved in amino acid and lipid metabolism. Rumen fluid metabolomes differed in steers of varying feed efficiencies. These metabolites may be used as biomarkers of feed efficiency and may provide insight as to factors contributing to differences in feed efficiency that may be exploited to improve feed efficiency in beef cattle herds.

Short communication: Variation in feed efficiency hampers use of carbon dioxide as a tracer gas in measuring methane emissions in on-farm conditions

Breeding cows for low CH4 emissions requires that the trait is variable and that it can be recorded with low cost from an adequate number of individuals and with high precision, but not necessarily with high accuracy if the trait is measured with high repeatability. The CH4:CO2 ratio in expired breath is a trait often used as a tracer with the production of CO2 predicted from body weight (BW), energy-corrected milk yield, and days of pregnancy. This approach assumes that efficiency of energy utilization for maintenance and production is constant. Data (307 cow-period observations) from 2 locations using the same setup for measuring CH4 and CO2 in respiration chambers were compiled, and observed production of CH4 and CO2 was compared with the equivalent predicted production using 2 different approaches. Carbon dioxide production was predicted using a previously reported model based on metabolic BW and energy-corrected milk production and a currently developed model based on energy requirements and the relationship between observed CO2 and heat production (models 1 and 2, respectively). Animals used were categorized (low, medium, and high efficiency) according to (1) residual feed intake and (2) residual milk production. Model 1 underestimated CH4 production by 15%, whereas model 2 overestimated CH4 by 1.4% for the whole database. Model 1 underestimated CO2 production by 2.8 and 0.9 kg/d for low- and high-efficiency cows, respectively, whereas model 2 underestimated CO2 production by 0.9 kg/d for low-efficient animals but overestimated it by 1.2 kg/d for high-efficiency cows. Efficient cows produce less heat, and consequently CO2, per unit of metabolic body weight and energy-corrected milk than inefficient cows, challenging the use of CO2 as a tracer gas. Because of biased estimates of CO2 production, the models overestimated CH4 production of high-efficiency cows by, on average, 17% relative to low-efficiency cows, respectively. Selecting low CH4-emitting cows using a CO2 tracer method can therefore favor inefficient cows over efficient cows.

Individual phenotyping of feed efficiency in lambs fed stable isotopes through maize silage

Recording feed intake and thus feed efficiency in ruminants is challenging. Hence, there is a need to establish indicator traits that can capture the individual variation in feed efficiency, without requiring individual feed intake recordings. This study aimed to explore whether the methodology established in salmon using individual indicator traits for feed efficiency based on stable isotope profiling could be transferred to lambs since the product for both species is meat. We used a total mixed ration based on maize silage to record the individual indicator traits for feed efficiency. The experiment was done with twelve weaned female lambs of the Norwegian White Sheep grouped equally in three, one group fed a total mixed ration enriched with 13C for 42 days, the second group grazed for 21 days and then fed the total mixed ration for 21 days, and the third group grazed for 42 days. The latter group was included to establish a baseline value for the stable isotope percentage in the back and thigh muscle tissues. Recording of 13C in the back muscle of the animals in the first two groups, resulted in a phenotypic correlation as large as 0.92 between individual feed conversion ratio and the individual indicator traits for feed efficiency based on stable isotope profiling. An assessment through individual indicator traits would be independent of the recording of individual feed intake.

The effects of energy metabolism variables on feed efficiency in respiration chamber studies with lactating dairy cows

The objective of the present study was to investigate factors related to variation in feed efficiency (FE) among cows. Data included 841 cow/period observations from 31 energy metabolism studies assembled across 3 research stations. The cows were categorized into low-, medium-, and high-FE groups according to residual feed intake (RFI), residual energy-corrected milk (RECM), and feed conversion efficiency (FCE). Mixed model regression was conducted to identify differences among the efficiency groups in animal and energy metabolism traits. Partial regression coefficients of both RFI and RECM agreed with published energy requirements more closely than cofficients derived from production experiments. Within RFI groups, efficient (Low-RFI) cows ate less, had a higher digestibility, produced less methane (CH4) and heat, and had a higher efficiency of metabolizable energy (ME) utilization for milk production. High-RECM (most efficient) cows produced 6.0 kg/d more of energy-corrected milk (ECM) than their Low-RECM (least efficient) contemporaries at the same feed intake. They had a higher digestibility, produced less CH4 and heat, and had a higher efficiency of ME utilization for milk production. The contributions of improved digestibility, reduced CH4, and reduced urinary energy losses to increased ME intake at the same feed intake were 84, 12, and 4%, respectively. For both RFI and RECM analysis, increased metabolizability contributed to approximately 35% improved FE, with the remaining 65% attributed to the greater efficiency of utilization of ME. The analysis within RECM groups suggested that the difference in ME utilization was mainly due to the higher maintenance requirement of Low-RECM cows compared with Medium- and High-RECM cows, whereas the difference between Medium- and High-RECM cows resulted mainly from the higher efficiency of ME utilization for milk production in High-RECM cows. The main difference within FCE (ECM/DMI) categories was a greater (8.2 kg/d) ECM yield at the expense of mobilization in High-FCE cows compared with Low-FCE cows. Methane intensity (CH4/ECM) was lower for efficient cows than for inefficient cows. The results indicated that RFI and RECM are different traits. We concluded that there is considerable variation in FE among cows that is not related to dilution of maintenance requirement or nutrient partitioning. Improving FE is a sustainable approach to reduce CH4 production per unit of product, and at the same time improve the economics of milk production.

Links between the rumen microbiota, methane emissions and feed efficiency of finishing steers offered dietary lipid and nitrate supplementation.

Ruminant methane production is a significant energy loss to the animal and major contributor to global greenhouse gas emissions. However, it also seems necessary for effective rumen function, so studies of anti-methanogenic treatments must also consider implications for feed efficiency. Between-animal variation in feed efficiency represents an alternative approach to reducing overall methane emissions intensity. Here we assess the effects of dietary additives designed to reduce methane emissions on the rumen microbiota, and explore relationships with feed efficiency within dietary treatment groups. Seventy-nine finishing steers were offered one of four diets (a forage/concentrate mixture supplemented with nitrate (NIT), lipid (MDDG) or a combination (COMB) compared to the control (CTL)). Rumen fluid samples were collected at the end of a 56 d feed efficiency measurement period. DNA was extracted, multiplexed 16s rRNA libraries sequenced (Illumina MiSeq) and taxonomic profiles were generated. The effect of dietary treatments and feed efficiency (within treatment groups) was conducted both overall (using non-metric multidimensional scaling (NMDS) and diversity indexes) and for individual taxa. Diet affected overall microbial populations but no overall difference in beta-diversity was observed. The relative abundance of Methanobacteriales (Methanobrevibacter and Methanosphaera) increased in MDDG relative to CTL, whilst VadinCA11 (Methanomassiliicoccales) was decreased. Trimethylamine precursors from rapeseed meal (only present in CTL) probably explain the differences in relative abundance of Methanomassiliicoccales. There were no differences in Shannon indexes between nominal low or high feed efficiency groups (expressed as feed conversion ratio or residual feed intake) within treatment groups. Relationships between the relative abundance of individual taxa and feed efficiency measures were observed, but were not consistent across dietary treatments.

Mitochondrial abundance and function in skeletal muscle and liver from Simmental beef cattle divergent for residual feed intake

Cellular mitochondrial function has been suggested to contribute to variation in feed efficiency (FE) among animals. The objective of this study was to determine mitochondrial abundance and activities of various mitochondrial respiratory chain complexes (complex I (CI) to complex IV (CIV)) in liver and muscle tissue from beef cattle phenotypically divergent for residual feed intake (RFI), a measure of FE. Individual DM intake (DMI) and growth were measured in purebred Simmental heifers (n = 24) and bulls (n = 28) with an initial mean BW (SD) of 372 kg (39.6) and 387 kg (50.6), respectively. All animals were offered concentrates ad libitum and 3 kg of grass silage daily, and feed intake was recorded for 70 days. Residuals of the regression of DMI on average daily gain (ADG), mid-test BW0.75 and backfat (BF), using all animals, were used to compute individual RFI coefficients. Animals were ranked within sex, by RFI into high (inefficient; top third of the population), medium (middle third of population) and low (efficient; bottom third of the population) terciles. Statistical analysis was carried out using the MIXED procedure of SAS v 9.3. Overall mean ADG (SD) and daily DMI (SD) for heifers were 1.2 (0.4) and 9.1 (0.5) kg, respectively, and for bulls were 1.8 (0.3) and 9.5 (1.02) kg, respectively. Heifers and bulls ranked as high RFI consumed 10% and 15% more (P < 0.05), respectively, than their low RFI counterparts. There was no effect of RFI on mitochondrial abundance in either liver or muscle (P > 0.05). An RFI × sex interaction was apparent for CI activity in muscle. High RFI animals had an increased activity (P < 0.05) of CIV in liver tissue compared to their low RFI counterparts; however, the relevance of that observation is not clear. Our data provide no clear evidence that cellular mitochondrial function within either skeletal muscle or hepatic tissue has an appreciable contributory role to overall variation in FE among beef cattle.

Metabolomics Analyses in High-Low Feed Efficient Dairy Cows Reveal Novel Biochemical Mechanisms and Predictive Biomarkers.

Residual feed intake (RFI) is designed to estimate net efficiency of feed use, so low RFI animals are considered for selection to reduce feeding costs. However, metabolic profiling of cows and availability of predictive metabolic biomarkers for RFI are scarce. Therefore, this study aims to generate a better understanding of metabolic mechanisms behind low and high RFI in Jerseys and Holsteins and identify potential predictive metabolic biomarkers. Each metabolite was analyzed to reveal their associations with two RFIs in two breeds by a linear regression model. An integrative analysis of metabolomics and transcriptomics was performed to explore interactions between functionally related metabolites and genes in the created metabolite networks. We found that three main clusters were detected in the heat map and all identified fatty acids (palmitoleic, hexadecanoic, octadecanoic, heptadecanoic, and tetradecanoic acid) were grouped in a cluster. The lower cluster were all from fatty acids, including palmitoleic acid, hexadecanoic acid, octadecanoic acid, heptadecanoic acid, and tetradecanoic acid. The first component of the partial least squares-discriminant analysis (PLS-DA) explained a majority (61.5%) of variations of all metabolites. A good division between two breeds was also observed. Significant differences between low and high RFIs existed in the fatty acid group (P < 0.001). Statistical results revealed clearly significant differences between breeds; however, the association of individual metabolites (leucine, ornithine, pentadecanoic acid, and valine) with the RFI status was only marginally significant or not significant due to a lower sample size. The integrated gene-metabolite pathway analysis showed that pathway impact values were higher than those of a single metabolic pathway. Both types of pathway analyses revealed three important pathways, which were aminoacyl-tRNA biosynthesis, alanine, aspartate, and glutamate metabolism, and the citrate cycle (TCA cycle). Finally, one gene (2-hydroxyacyl-CoA lyase 1 (+HACL1)) associated with two metabolites (-α-ketoglutarate and succinic acid) were identified in the gene-metabolite interaction network. This study provided novel metabolic pathways and integrated metabolic-gene expression networks in high and low RFI Holstein and Jersey cattle, thereby providing a better understanding of novel biochemical mechanisms underlying variation in feed efficiency.

Differentially expressed mRNAs, proteins and miRNAs associated to energy metabolism in skeletal muscle of beef cattle identified for low and high residual feed intake

BackgroundFeed efficiency is one of the most important parameters that affect beef production costs. The energy metabolism of skeletal muscle greatly contributes to variations in feed efficiency. However, information regarding differences in proteins involved in the energy metabolism of the skeletal muscle in beef cattle divergently identified for feed efficiency is scarce. In this study, we aimed to investigate energy metabolism of skeletal muscle of Nellore beef cattle, identified for low and high residual feed intake using a proteomics approach. We further assessed the expression of candidate microRNAs as a one of the possible mechanisms controlling the biosynthesis of the proteins involved in energy metabolism that were differentially abundant between high and low residual feed intake animals.ResultsA greater abundance of 14–3-3 protein epsilon (P = 0.01) was observed in skeletal muscle of residual feed intake (RFI) high animals (RFI-High). Conversely, a greater abundance of Heat Shock Protein Beta 1 (P < 0.01) was observed in the skeletal muscle of RFI-Low cattle. A greater mRNA expression of YWHAE, which encodes the 14–3-3 protein epsilon, was also observed in the skeletal muscle of RFI-High animals (P = 0.01). A lower mRNA expression of HSPB1, which encodes the Heat Shock Protein Beta 1, was observed in the skeletal muscle of RFI-High animals (P = 0.01). The miR-665 was identified as a potential regulator of the 14–3-3 protein epsilon, and its expression was greater in RFI-Low animals (P < .001). A greater expression of miR-34a (P = 0.01) and miR-2899 (P < .001) was observed in the skeletal muscle of RFI-High animals, as both miRNAs were identified as potential regulators of HSPB1 expression.ConclusionOur results show that Nellore cattle divergently identified for feed efficiency by RFI present changes in the abundance of proteins involved in energy expenditure in skeletal muscle. Moreover, our data point towards that miR-665, miR34a and miR-2899 are likely involved in controlling both 14-3-3 epsilon and HSPB1 proteins identified as differentially abundant in the skeletal muscle of RFI-High and RFI-Low Nellore cattle.

Characterizing the metabotype and its persistency in lactating Holstein cows: An approach toward metabolic efficiency measures

The variation in feed efficiency among dairy cows is due to differences in fermentation and digestion characteristics, but recent studies have suggested that various aspects of postabsorptive metabolic processes including heat production or the metabolizable energy for maintenance are more crucial. Thus, metabolic efficiency largely determines feed efficiency, but whether divergent feed efficient cows differ in O2 consumption and metabolic CO2 production, directly determining the metabolic rate has not been investigated. Therefore, the objective of the present study was to determine whether variation in ME intake (MEI), O2 consumption, and metabolic CO2 production account for the variation in metabolic efficiency of dairy cows and whether this effect persists across the lactation cycle. Eighteen cows with different German breeding value functional herd life were kept in freestalls with ad libitum access to a total mixed ration that was kept constant in composition throughout the first lactation. Cows were blood sampled and weighed at wk 5, 13, and 42 postpartum (pp) and transferred into respiration chambers. Animals were retrospectively clustered according to MEI, O2 consumption, and metabolic CO2 production, each normalized to metabolic body weight (mBW). Cluster analysis revealed 9 high metabolically efficient (high-Meff) and 9 low metabolically efficient cows. The high-Meff cows had greater MEI and feed conversion efficiency, produced less metabolic CO2 and methane, had a stronger negative energy balance, and tended to have a lower metabolic respiratory quotient. Further, high-Meff cows had lower residual MEI, less heat energy loss, and lower plasma glucose concentrations, but used a greater portion of body reserves instead of feed energy for milk synthesis, particularly at wk 5 and 13 pp. However, these group differences did not persist by wk 42 pp. Cow groups were not different in O2 consumption, milk yield, metabolizable energy for maintenance, or the efficiency of tissue utilization for milk synthesis, but high-Meff cows tended to have the lower German relative breeding value functional herd life, indicating a link between metabolic performance and productive lifespan. In conclusion, the use of a clustering approach involving MEI/mBW, O2/mBW, and CO2/mBW seems to be a promising method to differentiate cows with divergent metabolic efficiency but does not allow identifying an individual metabotype that persists across the whole lactation cycle.

Stable isotope profiling for large-scale evaluation of feed efficiency in Atlantic salmon (Salmo salar )

In growing animals, individual variation in feed efficiency may arise from individual differences in growth rate and protein metabolism. Over a period of time, these factors will affect the ratio between ‘new’ vs. ‘old’ protein, which can be quantified using isotope profiling. The aim of this study was to investigate the relationship between relative weight gain and atom percentage excess 15N in the muscle, liver and mid-intestine. A 50-day experiment was conducted with a total of 375 fish initially fed a standard diet, subsequently replaced by one out of five experimental diets, enriched with 15N. In general, fast-growing fish are expected to have a better feed efficiency, and the results show that this is captured by isotope profiling in liver and muscle tissues. Furthermore, individual variation in isotope content, that is relative fraction of ‘new’ protein, among fish with comparable growth rates was observed, most expressed around ~50% isotope saturation, indicating differences in protein degradation and replacement not attributed to growth. The results suggest that isotope profiles can be used as individual indicator traits for feed efficiency and that inclusion levels of stable isotopes of 1%–2% gave the most reliable results.

Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle

BackgroundMicroorganisms are responsible for fermentation within the rumen and have been reported to contribute to the variation in feed efficiency of cattle. However, to what extent the breed affects the rumen microbiome and its association with host feed efficiency is unknown. Here, rumen microbiomes of beef cattle (n = 48) from three breeds (Angus, Charolais, Kinsella composite hybrid) with high and low feed efficiency were explored using metagenomics and metatranscriptomics, aiming to identify differences between functional potentials and activities of same rumen microbiomes and to evaluate the effects of host breed and feed efficiency on the rumen microbiome.ResultsRumen metagenomes were more closely clustered together and thus more conserved among individuals than metatranscriptomes, suggesting that inter-individual functional variations at the RNA level were higher than those at the DNA level. However, while mRNA enrichment significantly increased the sequencing depth of mRNA and generated similar functional profiles to total RNA-based metatranscriptomics, it led to biased abundance estimation of several transcripts. We observed divergent rumen microbial composition (metatranscriptomic level) and functional potentials (metagenomic level) among three breeds, but differences in functional activity (metatranscriptomic level) were less apparent. Differential rumen microbial features (e.g., taxa, diversity indices, functional categories, and genes) were detected between cattle with high and low feed efficiency, and most of them were breed-specific.ConclusionsMetatranscriptomes represent real-time functional activities of microbiomes and have the potential to better associate rumen microorganisms with host performances compared to metagenomics. As total RNA-based metatranscriptomics seem to avoid potential biases caused by mRNA enrichment and allow simultaneous use of rRNA for generation of compositional profiles, we suggest their use for linking the rumen microbiome with host phenotypes in future studies. However, if exploration of specific lowly expressed genes is desired, mRNA enrichment is recommended as it will enhance the resolution of mRNA. Finally, the differential microbial features observed between efficient and inefficient steers tended to be specific to breeds, suggesting that interactions between host breed genotype and the rumen microbiome contribute to the variations in feed efficiency observed. These breed-associated differences represent an opportunity to engineer specific rumen microbiomes through selective breeding of the hosts.

Digestibility contributes to between-animal variation in feed efficiency in beef cows

Residual feed intake (RFI) is an alternative measure of feed efficiency (FE) and is calculated as the difference between actual and expected feed intake. The biological mechanisms underlying animal-to-animal variation in FE are not well understood. The aim of this study was to investigate the digestive ability of beef cows selected for RFI divergence as heifers, using two contrasted diets. Fifteen 4-year-old beef cows were selected from a total of 69 heifers based on their RFI following the feedlot test. The selected heifers were ranked into high-RFI (+ 1.02 ± 0.28, n = 8) and low-RFI (−0.73 ± 0.28, n = 7), and a digestibility trial was performed after their first lactation. Both RFI groups were offered two different diets: 100% hay or a fattening diet which consisted of a DM basis of 67% whole-plant maize silage and 33% high starch concentrates over four experimental periods (two per diet). A diet effect was observed on feed intake and apparent digestibility, whereas no diet × RFI interaction was detected (P > 0.05). Intake and apparent digestibility were higher in cows fed the fattening diet than in those fed the hay diet (P < 0.0001). DM intake (DMI) and organic matter apparent digestibility (OMd) were repeatable and positively correlated between the two subsequent periods of measurements. For the hay and fattening diets, the repeatability between periods was r = 0.71 and r = 0.73 for DMI and r = 0.87 and r = 0.48 for OMd, respectively. Moreover, both intake (r = 0.55) and OMd (r = 0.54) were positively correlated (P < 0.05) between the hay and fattening diets. Significant differences between beef cows selected for divergence in RFI as heifers were observed for digestive traits (P < 0.05), DM and organic matter (OM) apparent digestibility being higher for low-RFI cows. Overall, this study showed that apparent digestibility contributes to between-animal variation in FE in beef cows.

Increasing levels of rapeseed expeller meal in diets for pigs: effects on protein and energy metabolism

The heavy reliance on imported soybean meal (SBM) as a protein source makes it necessary for the European pig industry to search for alternatives and to develop pigs that perform efficiently when fed such ingredients. Digestion and metabolism are major physiological processes contributing to variation in feed efficiency. Therefore, an experiment was conducted to assess the effects of replacing SBM with increasing levels of rapeseed meal (RSM) in diets for young pigs on apparent total tract digestibility (ATTD) of energy and nutrients, nitrogen (N) balance, energy metabolism and carbohydrate, protein and fat oxidation. Four diets were fed to 32 pigs (22.7±4.1 kg initial BW) for three weeks. The diets consisted of a control cereal grain-SBM basal diet and three test diets where SBM and wheat were partially replaced with 10%, 20%, and 30% of expeller RSM. Increasing level of RSM in the diets linearly reduced ATTD of organic matter, CP, total carbohydrates, dietary fiber and energy. Utilization of digested nitrogen (DN) for N retention and total N excretion were not affected by RSM inclusion, however, RSM inclusion induced a shift in N excretion from urine to feces. Despite a linear increase in liver to metabolic BW ratio, heat production and utilization of metabolizable energy (ME) for retention were not affected by increasing RSM inclusion. In conclusion, replacing SBM with up to 30% of expeller RSM in nutritionally balanced diets for young pigs reduced the ATTD of most nutrients and energy, but did not affect N and energy retention in the body or efficiency of utilization of DN or ME for retention.

Nitrogen recycling and feed efficiency of cattle fed protein-restricted diets

The ability of cattle to grow and reproduce when ingesting low-protein diets is a crucial attribute for productive beef cattle systems in the seasonally dry tropics and subtropics. Nitrogen (N) recycling to the rumen is an important and known physiological mechanism allowing ruminants to efficiently grow in low-protein diets, but is usually disregarded in the nutritional models. This review discusses the role and magnitude of N recycling to provide additional N as microbial substrate in the rumen and in determining the efficiency of ruminants ingesting low-protein diets, to better understand the major factors regulating N recycling to the rumen. In addition to a review of the literature, study-adjusted regressions were used to evaluate various aspects of crude protein (CP) intake and availability, N recycling and excretion. There is large variation in N excretion and N-use efficiency among diets and among individuals, illustrating the opportunity for improvement in overall efficiency of cattle production. These data indicated that N recycling to the entire gastrointestinal tract supplies from half to twice as much N available for microbial growth as does the diet. Addition of rumen-degradable protein can increase rumen efficiency in using the available energy, as, conversely, the addition of fermentable energy can increase rumen efficiency in using the available CP. The present review has demonstrated that both are possible because of greater N recycling. Also, the importance of preserving the available N for determining individual variation in feed efficiency and the implications for selection are discussed. Nitrogen recycling can be controlled at both the epithelial wall of compartments of the gastrointestinal tract and at the liver, where ureagenesis occurs. Addition of fermentable energy can increase N recycling to the rumen and to post-ruminal tract by acting at both sites, and the mechanisms for this are discussed in the text. Although the effect of altering CP concentration in the diet has been substantially investigated, other factors potentially modulating N recycling, such as total fermentable energy, sources of protein and energy, hormonal modulation, and genetic variance, remain poorly understood. The selection of more efficient animals and development of diets with a lower environmental impact inescapably means further elucidation of the N-recycling mechanism.

Comparative study of productive performance and carcass parameters of Oravka, Amrock and their reciprocal crossbred chickens

Received: 2018-06-06 | Accepted: 2018-06-08 | Available online: 2018-11-26 https://doi.org/10.15414/afz.2018.21.04.183-185 The objective of this study was to compare the pure chicken breeds Oravka (OR; n = 50), Amrock (AM; n = 50) and their cross Oravka×Amrock (ORAM; n = 50) and Amrock×Oravka (AMOR; n = 50) for productive and carcass parameters. The birds were maintained on a deep litter system for a period of 20 weeks. We recorded that crossbred ORAM and AMOR chickens performed better than the average of parental genotypes for body weight and body weight gain in brooding and growing period. The poor (P 0.05) difference among pure and crossbred chickens. The highest carcass yield was observed in ORAM (62.53%) followed by AMOR (62.48%), AM (62.41%) and OR (62.39%) chickens. Keywords: body conformation, body weight, chicken, crossbreding, feed utility References Adebambo, A.O. (2011) Combining abilities among four breeds of chicken for feed efficiency variation: a preliminary assessment for chicken improvement in Nigeria. Tropical Animal Health and Production, 43, 1465-1466. DOI: https://dx.doi.org/10.1007/s11250-011-9844-y Almasi, A., Suto, Z., Budai, Z., Donko, T., Milisits, G., Horn, P. (2012) Effect of age, sex and strain on growth, body composition and carcass characteristics of dual purpose type chicken. World´s Poultry Science Journal, Supplement 1, 47-50. Besbes, B. (2009) Genotype evaluation and breeding of poultry for performance under sub-optimal village conditions. World´s Poultry Science Journal, 65, 260-271. DOI: https://dx.doi.org/10.10.17/50043933909000221 Brickett, K.E., Dahiya, J.P., Classen, H.L., Gomis, S. (2007) Influence of dietary nutrient density, feed form, and lighting on growth and meat yield of broiler chickens. Poultry Science, 86, 2172-2181. Duncan, D.B. (1955). The Multiple Range and Multiple F-test. Biometrics, 11, 1-42. DOI: https://dx.doi.org/10.2307/3001478 Havenstein, G.B., Ferket, P.R., Qureshi, M.A. (2003) Carcass composition and yield of 1957 versus 2001 broilers when fed representative 1957 and 2001 broiler diets. Poultry Science, 82, 1509-1518. Hoffmann, I. (2005) Research and investment in poultry genetic resources-challengs and options for sustainable use. World’s Poultry Science Journal, 61, 57-69. DOI: https://dx.doi.org/10.1079/WPS200449 Iraqi, M.M., Afifi, E.A., Abdel-Ghany, A.M., Afram, M. (2005) Diallel crossing analysis for livability data involving two standard and two native Egyptian chicken breeds. Livestock Research for Rural Development, 17 (7). Janocha, A., Osek, M., Klocek, B., Wasilowska, Z., Turyk, Z. (2003) Quality evaluation of broiler chickens of various genetic groups. Appl. Sci. Rep. Anim. Prod. Rev., 68, 141-148. JASP 0.8.6 software (2018). Khawaja, T., Khan, S. H., Mukhtar, N., Parveen, A. (2012) Comparative study of growth performance, meat quality and haematological parameters of Fayoumi, Rhode Island Red and their reciprocal crossbred chickens. Italian Journal of Animal Science, 11, e39. DOI: https://dx.doi.org/10.4081/ijas.2012.e39 Khawaja, T., Khan, S. H., Parveen, A., Iqbal, J. (2016) Growth performance, meat composition and haematological parameters of first generation of newly evolved hybridized pure chicken and their crossbred parents. Veterinarski Arhiv, 86 (1), 135-148. Nawar, M.E., Aly, O.M., Abd El-Hamid, A.E. (2004) The effect of crossing on some economic traits in chickens. Egyptian Poultry Science Journal, 24, 163-176. Sengul, T., Cetin, M., Konca, Y., Yildiz, A. (2003) Comparison of growth performance and carcass yield of some commercial broilers. Journal of Poultry Research, 3 (1), 12-16. Sharaf, M.M., Mandour, M.A., Taha, A.E. (2006) Effect of diallel crossing on same growth performance, carcass traits and immune response against new castle disease virus vaccine of Japanese quails. Egyptian Poultry Science, 3, 1451-1470.