AbstractIn this paper we report a study on the plasma signatures (electron temperature, plasma density, and field‐aligned current) of patchy pulsating auroras in the upper F region ionosphere using Swarm satellite data. Via a survey of 38 patch crossing events, we repeatedly identify a strong electron temperature enhancement associated with the pulsating aurora. On average, the electron temperature at Swarm satellite altitudes (~460 km) increases from ~2200 K at subauroral latitudes to a peak of ~3000 K within the pulsating auroral patch. This indicates that pulsating auroras may act as an important heating source for the nightside ionosphere. On the other hand, no well‐defined trend of plasma density variations associated with pulsating auroras is identified at Swarm altitudes. The field‐aligned currents within the pulsating aurora patch are mostly upward, with mean magnitudes on order of ~1 μA/m2. We then perform a numerical simulation to explore the potential mechanisms underlying the strong electron heating associated with the pulsating aurora. Via simulations we find that to account for the realistic electron temperature observation in a major portion of our events, pulsating auroras are likely accompanied by substantial magnetospheric heat fluxes around the order of ~1010 eV/cm2. We propose that such magnetospheric heat fluxes may be pertinent to one long‐hypothesized feature of pulsating auroras, namely, the coexistence of an enhanced low‐energy plasma population in magnetic flux tubes threading the pulsating aurora, in addition to the energetic electron precipitation. Via a Swarm survey we repeatedly find a strong electron temperature enhancement associated with the pulsating aurora The field‐aligned currents within pulsating auroras are moderately upward, with mean magnitudes on the order of ~1e−6 A/m2 To explain the observed electron heating, pulsating auroras are likely accompanied by magnetospheric heat fluxes around ~1E+10 eV/cm2/s.