The increase of nitrogen and phosphorus causes eutrophication in water bodies. Using submerged plants to decrease the pollution from water bodies is an effective way. In this research, three common submerged plants (Vallisneria natans, Hydrilla verticillata, and Ceratophyllum demersum) and their combinations were used to purify eutrophic water. The control treatment did not contain any plants. The removal effects and dynamic regulations of the three plants with their combinations of nutrients (such as nitrogen and phosphorus) in water were analyzed. All three species and their combinations above could grow in the eutrophic water and efficiently remove aquatic nutrients. All the treatment groups had a higher pollutant removal rate for total nitrogen (TN) and total phosphorus (TP) than that of the blank control. In these treatment groups, treatment F (50 g Vallisneria natans plus 50 g Ceratophyllum demersum) had the highest removal rate of TP at 57.53%; treatment B (100 g Vallisneria natans) had the best removal rate of TN at 92.04 %. Among these plants and their combinations, Vallisneria natans and Ceratophyllum demersum showed better purification ability; the combination of these two submerged plants and the combination of three submerged plants were more applicable for the restoration of eutrophic water.