UV-B Conditions Research Articles

Dissecting the genetic basis of UV-B responsive metabolites in rice

BackgroundUV-B, an important environmental factor, has been shown to affect the yield and quality of rice (Oryza sativa) worldwide. However, the molecular mechanisms underlying the response to UV-B stress remain elusive in rice.ResultsWe perform comprehensive metabolic profiling of leaves from 160 diverse rice accessions under UV-B and normal light conditions using a widely targeted metabolomics approach. Our results reveal substantial differences in metabolite accumulation between the two major rice subspecies indica and japonica, especially after UV-B treatment, implying the possible role and mechanism of metabolome changes in subspecies differentiation and the stress response. We next conduct a transcriptome analysis from four representative rice varieties under UV-B stress, revealing genes from amino acid and flavonoid pathways involved in the UV-B response. We further perform a metabolite-based genome-wide association study (mGWAS), which reveals 3307 distinct loci under UV-B stress. Identification and functional validation of candidate genes show that OsMYB44 regulates tryptamine accumulation to mediate UV-B tolerance, while OsUVR8 interacts with OsMYB110 to promote flavonoid accumulation and UV-B tolerance in a coordinated manner. Additionally, haplotype analysis suggests that natural variation of OsUVR8groupA contributes to UV-B resistance in rice.ConclusionsOur study reveals the complex biochemical and genetic foundations that govern the metabolite dynamics underlying the response, tolerance, and adaptive strategies of rice to UV-B stress. These findings provide new insights into the biochemical and genetic basis of the metabolome underlying the crop response, tolerance, and adaptation to UV-B stress.

Responses of microorganisms to different wavelengths of light radiation during green waste composting

Light radiation can degrade recalcitrant materials like lignocelluloses in litter and serve as a physical condition to accelerate green waste (GW) decomposition, but few studies have considered the microbial effects of light wavelength on GW composting. This study innovatively investigated the effects of different wavelengths of light radiation, including full-spectrum, no blue light, no UV, no UV-A, no UV-B, and dark conditions, on accelerating the GW composting process. Especially, the study explored the dynamic changes in the degradation of lignocelluloses and evaluated the responses of microorganisms throughout the composting process under different light radiation wavelengths. No blue light (where radiation between 400 and 500 nm was blocked by the film) yielded the highest-quality compost within 40 days. In comparison to the dark (control), no blue light exhibited an elevated composting temperature (56.7 °C), an extended thermophilic phase (6 days), and increased degradation rates of lignin, cellulose, and hemicellulose by 13 %, 15 %, and 12 %, respectively. This study revealed that during the composting mesophilic phase, bacterial diversity performed best under no blue light, while fungal diversity excelled under full-spectrum. In the thermophilic phase, microbial diversity exhibited optimal performance under full-spectrum. During the cooling phase, bacterial diversity was highest under no blue light, and fungal diversity excelled under no UV-A. During the mesophilic and cooling phases, the bacterial ACE index for no blue light exceeded that of the other light radiation wavelengths, with values of 418 and 494, respectively. Under no blue light, the Shannon index of microorganisms remained within the range of 2.0–4.8, demonstrating superior performance. Meanwhile, the relative abundances of lignin-degrading microorganisms (Flavobacterium, Acaulium, and Acremoniu) under no blue light has increased, demonstrating improved microbial community structures. Therefore, no blue light radiation offered a novel approach to expedite GW composting.

Potential of UV-B radiation in drought stress resilience: A multidimensional approach to plant adaptation and future implications.

The escalating impact of climate change and ultraviolet (UV) radiation is subjecting plants to unique combinations of UV-B and drought stress. These combined stressors could have additive, synergistic, or antagonistic effects, but the precise nature of these impacts remains uncertain, hampering our ability to predict plant adaptations approach towards stressors. Our analysis of various studies shows that UV-B or drought conditions detrimentally influence plant growth and health metrics by the enhanced generation of reactive oxygen speciescausing damage to lipids, proteins, carbohydrates and DNA. Further reducing biomass accumulation, plant height, photosynthetic efficiency, leaf area, and water transpiration, while enhancing stress-related symptoms. In response to UV-B radiation and drought stress, plants exhibit a notable up-regulation of specific acclimation-associated metabolites, including proline, flavonoids, anthocyanins, unsaturated fatty acids, and antioxidants. These metabolites play a pivotal role in conferring protection against environmental stresses. Their biosynthesis and functional roles are potentially modulated by signalling molecules such as hydrogen peroxide, abscisic acid, jasmonic acid, salicylic acid, and ethylene, all of which have associated genetic markers that further elucidate their involvement in stress response pathways. In comparison to single stress, the combination of UV-B and drought induces the plant defence responses and growth retardation which are less-than-additive. This sub-additive response, consistent across different study environments, suggests the possibility of a cross-resistance mechanism. Our outlines imply that the adverse effects of increased drought and UV-B could potentially be mitigated by cross-talk between UV-B and drought regimes utilizing a multidimensional approach. This crucial insight could contribute significantly to refining our understanding of stress tolerance in the face of ongoing global climate change.

Extreme environmental adaptation mechanisms of Antarctic bryophytes are mainly the activation of antioxidants, secondary metabolites and photosynthetic pathways

The environment in Antarctica is characterized by low temperature, intense UVB and few vegetation types. The Pohlia nutans M211 are bryophytes, which are the primary plants in Antarctica and can thrive well in the Antarctic harsh environment. The transcriptional profiling of Pohlia nutans M211 under low temperature and high UVB conditions was analyzed to explore their polar adaptation mechanism in the extreme Antarctic environment by third-generation sequencing and second-generation sequencing. In comparison to earlier second-generation sequencing techniques, a total of 43,101 non-redundant transcripts and 10,532 lncRNA transcripts were obtained, which were longer and more accurate. The analysis results of GO, KEGG, AS (alternative splicing), and WGCNA (weighted gene co-expression network analysis) of DEGs (differentially expressed genes), combined with the biochemical kits revealed that antioxidant, secondary metabolites pathways and photosynthesis were the key adaptive pathways for Pohlia nutans M211 to the Antarctic extreme environment. Furthermore, the low temperature and strong UVB are closely linked for the first time by the gene HY5 (hlongated hypocotyl 5) to form a protein interaction network through the PPI (protein–protein interaction networks) analysis method. The UVR8 module, photosynthetic module, secondary metabolites synthesis module, and temperature response module were the key components of the PPI network. In conclusion, this study will help to further explore the polar adaptation mechanism of Antarctic plants represented by bryophytes and to enrich the polar gene resources.

Does the egg capsule protect against chronic UV-B radiation? A study based on encapsulated and decapsulated embryos of cuttlefish Sepia officinalis.

Although the egg capsule plays a crucial role in the embryonic development of cephalopods, its ability to protect embryos from Ultraviolet (UV) radiation is unknown. Our study evaluated the photoprotection mechanisms of S. officinalis to UV-B radiation and estimated the ability of the black capsule to act as a physical shield against it. Embryos with and without capsule and juveniles were exposed to four experimental UVB conditions for 55 days. The effects of different UVB doses were evaluated in terms of morphological abnormalities and differences in gene expression between each group. We observed that the development might be severely impaired in embryos exposed to UVB without capsule protection, and these effects were time- and UVB-dose-dependent. In addition, we found variations in gene expression levels (light-sensitive, stress response and DNA repair) in different tissues as a function of UVB doses. We suggest a relationship between morphological abnormalities and the limit of molecular regulation. These results suggest that the quantitative differences in expression are essential for defining the survivability of the embryo face to UVB. Thus, we demonstrated that the egg capsule could ensure successful embryonic development of the cuttlefish S. officinalis even at high doses of UVB.

Ultraviolet-B radiation stress triggers reactive oxygen species and regulates the antioxidant defense and photosynthesis systems of intertidal red algae Neoporphyra haitanensis

The enhancement of harmful ultraviolet-B (UV-B, 280–320 nm wavelength) radiation is a serious problem generally faced by photosynthetic organisms. Previous studies have reported that the currently increasing level of UV-B radiation received on earth can promote the formation of reactive oxygen species (ROS) by altering the antioxidant defense system or by hampering of photosynthesis system of plants. However, the relationship between the UV-B-induced ROS production, antioxidant capacity, and photosynthetic performance in macroalgae remains unclear. In this study, the regulation of the antioxidant system and photosynthetic activity by ROS triggered by UV-B radiation were investigated in an intertidal seaweed, Neoporphyra haitanensis. The contents of hydrogen peroxide and malondialdehyde increased with enhanced UV-B radiation, indicating N. haitanensis experienced oxidative stress. Increased activities of antioxidant enzymes showed a positive response of enzymatic antioxidants to maintain the balance of ROS under low UV-B conditions. Likewise, an accumulation of non-enzymatic antioxidants occurred and glutathione redox status was maintained at a high level, suggesting that the ascorbate–glutathione cycle played an indispensable role in detoxifying ROS. Nevertheless, high UV-B radiation markedly inhibited the efficiency of the enzymatic and non-enzymatic antioxidants, causing oxidative damage and a depression of photosynthesis. The addition of ROS scavengers alleviated the increased oxidation level caused by UV-B radiation, implying that oxidative damage under UV-B condition was ascribed to accumulated ROS. The activation of the antioxidant defense system was also modulated by ROS. Additionally, the decreased photosynthetic activities induced by enhanced UV-B radiation were reversed by ROS scavengers, indicating that ROS-mediated oxidative damage caused by UV-B radiation is one of the important causes of photo-inhibitory damage in N. haitanensis. Overall, these results shed some light on the close relationship between UV-B-induced ROS production, the antioxidant defense system, and photosynthetic performance in macroalgae, which helps to reveal their survival strategies for adapting to highly variable marine intertidal environments.

The Role of Tire Leachate in Condition-Specific Competition and the Persistence of a Resident Mosquito from a Competitively Superior Invader.

(1) Background: Condition-specific competition, when the outcome of competition varies with abiotic conditions, can facilitate species coexistence in spatially or temporally variable environments. Discarded vehicle tires degrade to leach contaminants into collected rainwater that provide habitats for competing mosquito species. We tested the hypothesis that more highly degraded tires that contain greater tire leachate alters interspecific mosquito competition to produce a condition-specific advantage for the resident, Culex pipiens, by altering the outcome of competition with the competitively superior invasive Aedes albopictus. (2) Methods: In a competition trial, varying densities of newly hatched Ae. albopictus and Cx. pipiens larvae were added to tires that had been exposed to three different ultraviolet (UV)-B conditions that mimicked full-sun, shade, or no UV-B conditions in the field. We also measured Cx. pipiens and Ae. albopictus oviposition preference among four treatments with varying tire leachate (high and low) and resources (high and low) amounts to determine if adult gravid females avoided habitats with higher tire leachate. (3) Results: We found stronger competitive effects of Cx. pipiens on the population performance and survival of Ae. albopictus in tires exposed to shade and full-sun conditions that had higher concentrations of contaminants. Further, zinc concentration was higher in emergent adults of Ae. albopictus than Cx. pipiens. Oviposition by these species was similar between tire leachate treatments but not by resource amount. (4) Conclusions: These results suggest that degraded tires with higher tire leachate may promote condition-specific competition by reducing the competitive advantage of invasive Ae. albopictus over resident Cx. pipiens and, combined with Cx. pipiens' preferential oviposition in higher resource sites, contribute to the persistence of the resident species.

Individual and Interactive Effects of Multiple Abiotic Stress Treatments on Early-Season Growth and Development of Two Brassica Species

Potential global climate change-related impacts on crop production have emerged as a major research priority and societal concern during the past decade. Future changes, natural and human-induced, projected in the climate have implications for regional and global crop production. The simultaneous occurrence of several abiotic stresses instead of stress conditions is most detrimental to crops, and this has been long known by farmers and breeders. The green leafy vegetables of the Brassicaceae family have especially gained attention due to their many health benefits. However, little information is available about abiotic stress’s effects on Brassica vegetables’ growth and development. An experiment was conducted on two Brassica species: B. oleracea L. var. acephala WINTERBOR F1 (hybrid kale) and B. juncea var. GREEN WAVE OG (mustard greens). Seven treatments were imposed on the two brassica species in soil–plant–atmosphere–research (SPAR) units under optimum moisture and nutrient conditions, including a control treatment (optimal temperature and UV-B conditions at ambient CO2 levels), and six treatments where stresses were elevated: CO2, UV-B, temperature (T), CO2+UV-B, CO2+T, and CO2+UV-B+T. Above- and below-ground growth parameters were assessed at 26 d after sowing. Several shoot and root morphological and developmental traits were evaluated under all the treatments. The measured growth and development traits declined significantly under individual stresses and under the interaction of these stresses in both the species, except under elevated CO2 treatment. All the traits showed maximum reductions under high IV-B levels in both species. Leaf area showed 78% and 72% reductions, and stem dry weight decreased by 73% and 81% in kale and mustard, respectively, under high UV-B levels. The increased CO2 concentrations alleviated some deleterious impacts of high temperature and UV-B stresses. The results of our current study will improve our understanding of the adverse effects of environmental stresses on the early-season growth and development of two Brassica species.

Identification of the Regulatory Genes of UV-B-Induced Anthocyanin Biosynthesis in Pepper Fruit.

Fruit peels of certain pepper (Capsicum annum L.) varieties accumulate a large amount of anthocyanins and exhibit purple color under medium-wave ultraviolet (UV-B) conditions, which severely impacts the commodity value of peppers. However, the regulatory mechanism of the above process has not been well studied so far. To explore which key genes are involved in this regulatory mechanism, pepper variety 19Q6100, the fruit peels of which turn purple under UV-B conditions, was investigated in this study. Transcription factors with expression levels significantly impacted by UV-B were identified by RNA-seq. Those genes may be involved in the regulation of UV-B-induced anthocyanin biosynthesis. Yeast one-hybrid results revealed that seven transcription factors, CabHLH143, CaMYB113, CabHLH137, CaMYBG, CaWRKY41, CaWRKY44 and CaWRKY53 directly bound to the putative promotor regions of the structural genes in the anthocyanin biosynthesis pathway. CaMYB113 was found to interact with CabHLH143 and CaHY5 by yeast two-hybrid assay, and those three genes may participate collaboratively in UV-B-induced anthocyanin biosynthesis in pepper fruit. Virus-induced gene silencing (VIGS) indicated that fruit peels of CaMYB113-silenced plants were unable to turn purple under UV-B conditions. These findings could deepen our understanding of UV-B-induced anthocyanin biosynthesis in pepper.

Effect of high-intensity light and UV-B on photosynthetic activity and the expression of certain light-responsive genes in A. thaliana phyA and phyB mutants

The effects of high-intensity light (HIL, 4 and 24 h) and UV-B (1 h) on the net photosynthesis rate, activity of photosystem II (PSII), content of photosynthetic pigments, anthocyanin and UV-absorbing pigments as well as the expression of certain light-responsive genes (HY5,CAB1) chalcone synthase (CHS) and main antioxidants enzyme genes (APX1, GPX and GR) in the leaves of phyB and phyA mutant A. thaliana plants were studied. Both UV-B and 4 and 24 h HIL decreased the PSII maximum quantum yield (Fv/Fm), PSII performance index (PIABS), photosynthesis and respiration rates in plants. Moreover, all stress treatments increased the dissipation of the absorbed energy (DI0/RC) as well as the flux of absorbed energy per RC (ABS/RC). The maximal changes in photosynthesis and chlorophyll fluorescence parameters were observed in the phyB mutant. The WT and the phyA mutant showed similar responses. In addition, the phyB mutant exhibited decreases in the expression of genes encoding enzyme CHS, the transcription factor HY5 and the antioxidant enzymes APX1 and GPX. One of the possible mechanisms protecting the photosynthetic apparatus from light excess or UV radiation is the elevated content of various pigments that can act as antioxidants or optical filters. We assume that the greater decrease in photosynthetic activity in the phyB mutant under HIL and UV-B conditions was due to the decreased content of carotenoids and UV-absorbing pigments in this mutant.

Ultraviolet B irradiation-induced keratinocyte senescence and impaired development of 3D epidermal reconstruct.

Ultraviolet B (UVB) induces morphological and functional changes of the skin. This study investigated the effect of UVB on keratinocyte senescence and the development of reconstructed human epidermis (RHE). Primary normal human keratinocytes (NHK) from juvenile foreskin were irradiated with UVB (30 mJ cm-2) and these effects were compared to NHK that underwent senescence in the late passage. UVB enhanced the accumulation of reactive oxygen species (ROS) and halted cell replication as detected by BrdU cell proliferation assay. The senescence phenotype was evaluated by beta-galactosidase (β-gal) staining and qPCR of genes related to senescent regulation, i.e. p16INK4a, cyclin D2, and IFI27. Senescence induced by high dose UVB resulted in morphological changes, enhanced β-gal activity, elevated cellular ROS levels and reduced DNA synthesis. qPCR revealed differential expression of the genes regulated senescence. p16INK4a expression was significantly increased in NHK exposed to UVB whereas enhanced IFI27 expression was observed only in cultural senescence. The levels of cyclin D2 expression were not significantly altered either by UVB or long culturing conditions. UVB significantly induced the aging phenotype in keratinocytes and impaired epidermal development. RHE generated from UVB-irradiated keratinocytes showed a thinner cross-sectional structure and the majority of keratinocytes in the lower epidermis were degenerated. The 3D epidermis model is useful in studying the skin aging process.

The Role of UV-B light on Small RNA Activity During Grapevine Berry Development.

We explored the effects of ultraviolet B radiation (UV-B) on the developmental dynamics of microRNAs and phased small-interfering-RNA (phasi-RNAs)-producing loci by sequencing small RNAs in vegetative and reproductive organs of grapevine (Vitis vinifera L.). In particular, we tested different UV-B conditions in in vitro-grown plantlets (high-fluence exposition) and in berries from field-grown (radiation filtering) and greenhouse-grown (low- and high-fluence expositions) adult plants throughout fruit development and ripening. The functional significance of the observed UV-coordinated miRNA responses was supported by degradome evidences of ARGONAUTE (AGO)-programmed slicing of mRNAs. Co-expression patterns of the up-regulated miRNAs miR156, miR482, miR530, and miR828 with cognate target gene expressions in response to high-fluence UV-B was tested by q-RT-PCR. The observed UV-response relationships were also interrogated against two published UV-stress and developmental transcriptome datasets. Together, the dynamics observed between miRNAs and targets suggest that changes in target abundance are mediated transcriptionally and, in some cases, modulated post-transcriptionally by miRNAs. Despite the major changes in target abundance are being controlled primarily by those developmental effects that are similar between treatments, we show evidence for novel miRNA-regulatory networks in grape. A model is proposed where high-fluence UV-B increases miR168 and miR530 that target ARGONAUTE 1 (AGO1) and a Plus-3 domain mRNA, respectively, while decreasing miR403 that targets AGO2, thereby coordinating post-transcriptional gene silencing activities by different AGOs. Up-regulation of miR3627/4376 could facilitate anthocyanin accumulation by antagonizing a calcium effector, whereas miR395 and miR399, induced by micronutrient deficiencies known to trigger anthocyanin accumulation, respond positively to UV-B radiation. Finally, increases in the abundance of an anthocyanin-regulatory MYB-bHLH-WD40 complex elucidated in Arabidopsis, mediated by UV-B-induced changes in miR156/miR535, could contribute to the observed up-regulation of miR828. In turn, miR828 would regulate the AtMYB113-ortologues MYBA5, A6 and A7 (and thereby anthocyanins) via a widely conserved and previously validated auto-regulatory loop involving miR828 and phasi TAS4abc RNAs.

Arabidopsis E2Fc is required for the DNA damage response under UV‐B radiation epistatically over the microRNA396 and independently of E2Fe

UV-B radiation inhibits plant growth, and this inhibition is, to a certain extent, regulated by miR396-mediated repression of Growth Regulating Transcription factors (GRFs). Moreover, E2Fe transcription factor also modulates Arabidopsis leaf growth. Here, we provide evidence that, at UV-B intensities that induce DNA damage, E2Fc participates in the inhibition of cell proliferation. We demonstrate that E2Fc-deficient plants show a lower inhibition of leaf size under UV-B conditions that damage DNA, decreased cell death after exposure and altered SOG1 and ATR expression. Interestingly, the previously reported participation of E2Fe in UV-B responses, which is a transcriptional target of E2Fc, is independent and different from that described for E2Fc. Conversely, we here demonstrate that E2Fc has an epistatic role over the miR396 pathway under UV-B conditions. Finally, we show that inhibition of cell proliferation by UV-B is independent of the regulation of class II TCP transcription factors. Together, our results demonstrate that E2Fc is required for miR396 activity on cell proliferation under UV-B, and that its role is independent of E2Fe, probably modulating DNA damage responses through the regulation of SOG1 and ATR transcript levels.

Effects of ultraviolet radiation on metabolic rate and fitness of Aedes albopictus and Culex pipiens mosquitoes.

Natural and anthropogenic changes (e.g., land use change, pollution) will alter many environmental factors in the coming years, including the amount of solar radiation reaching the earth’s surface. Alterations in solar radiation exposure is likely to impact the ecologies of many living organisms, including invertebrates that inhabit aquatic habitats. In this study, we assessed the effect of UV-B radiation on the metabolic rates and fitness (survival, development time, body size) of Aedes albopictus and Culex pipiens mosquitoes and the activity of their microbial food resources in experimental aquatic microcosms. We exposed single-species cohorts of newly hatched Ae. albopictus and Cx. pipiens larvae and a control treatment with no larvae to three UV-B conditions that mimicked those in full-sun and shade in the field and to a control condition with no UV-B radiation. Our results indicated that UV-B radiation affected the metabolic rates of both Ae. albopictus and Cx. pipiens larvae, with significantly higher rates found in full-sun compared to shade and no-UV conditions, 8 and 15 days after exposure began. Ae. albopictus and Cx. pipiens survival was also affected by UV-B radiation condition, with significantly lower survival in full-sun compared to shade and no UV-B conditions. Microbial metabolic rates were consistently significantly lower in full-sun compared to shade and no-UV conditions, especially at 8 days of exposure. These results show that UV-B radiation at levels found in open spaces showed strong and important impacts on the metabolic rates and survival of Ae. albopictus and Cx. pipiens larvae. Decreased survival of Ae. albopictus and Cx. pipiens with higher UV-B radiation levels may be caused by both direct exposure to radiation as well as the indirect effects of reduced microbial food, resulting in greater metabolic demands and stress. Negative impacts of UV-B radiation on the survival of Ae. albopictus and Cx. pipiens are likely to have important implications for the distribution and abundance of these mosquitoes, and the transmission of pathogens that these two broadly distributed mosquitoes vector.

UV Assisted Densification of Perhydropolysilazane (PHPS) Based Spin-on Glass in High Aspect Ratio Gap Fill Structure

As device dimensions scale, defect-free, robust gap filling in high aspect ratio structures such as STI and inter-gate spaces becomes increasingly challenging. This is due to very high aspect ratio (AR) of gap fill structure (AR > 7:1), shrinking CDs (<20nm) and nearly vertical sidewalls gate profiles (>88deg). The Spin-On Dielectric such as (SOD) PerHydroPolySilazane (PHPS) is preferred choice as it provides defect-free and structure agnostic gap fill (1). As coated, the PHPS film has a long polymeric chain of hydrogen terminated -Si-N-Si- network with high % of N and terminal H. The film as-coated has very high etch rate in HF based chemistry. The film structure needs to be fully converted into a dense, cross-linked network of SiO2 via silanol condensation reaction during steam anneal carried out at ≤600C. However, as the critical dimension reaches below 20nm, the inability of steam to diffuse to the bottom of high aspect ratio features results in oxide density gradient leaving very weak oxide near the bottom of trench. High temperature anneal (> 600⁰C) is not feasible for inter-gate gap fill due to its impact on junction. Non-thermal approaches are needed to improve the oxide quality inside high aspect ratio features. The use of monochromatic UV radiation for low temperature conversion of PHPS film is well documented (2). Here, broadband UV (200nm-450nm) was explored to assess its effectiveness in improving In-Trench oxide density post steam anneal. The effect of three UV conditions (UV-A, UV-B, UV-C) and modified steam anneal condition on structure and composition of as-coated PHPS film was assessed using FTIR (Fig. 1) and XPS Depth Profiling (Fig. 2). In blanket experiments, the densification effect by UV of as-coated PHPS films was assessed post-steam anneal by measuring through-thickness wet etch rate (Fig. 3). This was done by sequential etching of annealed films in 100:1 dHF chemistry (400s) followed by thickness measurement. The average relative (to thermal oxide) wet etch rate of blanket oxide films exposed to various UV conditions and modified anneal conditions is listed in Table 1. FTIR and XPS depth profiles (Fig. 1) of UV treated PHPS films show significant modulation with UV conditions. The more aggressive the UV conditions, the lower the overall %N. Data also suggests that UV treated films have progressively higher O2 and reduced N at more aggressive UV conditions. This is because the effective breaking of Si-H, N-H and SI-N bonds in UV treated films which loosen the backbone structure, thereby facilitating oxygen/moisture diffusion relative to as-coated film. Low-temperature O2 soak step prior to steam anneal was found to be very effective in achieving denser oxide post-anneal for UV cured films. However, due to limited O2 diffusivity of oxygen in as-coated PHPS film due to denser network for non-UV treated PHPS films, O2 soak prior to steam anneal is more effective only at higher temperature. Optimized UV and anneal conditions from the blanket study were further explored on integrated wafers consiting of 7nm dimension inter-gate gap fill. These structures were filled with PHPS and treated with different UV conditions prior to annealing and planarization. In-Trench wet etch rate was obtained by sequentially measuring In-trench wet etch rate of oxide similar to the blanket film etch study. In each cycle, the wafer was exposed for 60s in 100:1 HF chemistry. Optical Scatterometry was used to measure In Trench oxide recess amount per etch cycle as well as cumulative oxide recess after 5 sequential etch cycles (5X 60s HF (100:1)) (fig. 4). Table 2 displays average In Trench wet etch rate comparison between the UV treated films and control cell post-steam anneal. The blanket wet etch rate data in Table 1 suggest 18% lowering just by modifying anneal for non-UV cell. Insertion of UV between spin coating and anneal helps further reduction in blanket wet etch rates (UV-A > UV-B > UV-C). UV-C condition had 34% reduction in blanket etch rate. However, blanket etch rate trend with UV condition did not quite translate to the In-Trench wet etch rate. While the overall in-trench wet etch performance for UV treated cells was better than control, the UV-A and UV-B conditions had lower in-trench WERR than UV-C condition. These results will be explained in the light of moisture sensitivity of UV exposed PHPS films as a function of UV conditions and its impact on overall wet etch rate post-anneal. References Trivedi et al., J. Vac. Sci. Technol. B, Vol 27, No. 6, pp 3145-3148Prager et al., Chem. Eur. J., 2009, vol. 15, pp 675-683 Figure 1

Surviving but not thriving: inconsistent responses of zooxanthellate jellyfish polyps to ocean warming and future UV-B scenarios.

Complex changes to UV radiation at the Earth’s surface are occurring concurrently with ocean warming. Despite few empirical tests, jellyfish are hypothesised to be increasing in some parts of the world because they are robust to environmental stressors. Here we examine the effects of UV-B and ocean warming projections on zooxanthellate jellyfish polyps. We exposed Cassiopea sp. polyps to three levels of UV-B (future-low (1.43 Wm2), current (1.60 Wm2), future-high (1.77 Wm2)) and two levels of temperature (current-day (25 °C) and future (28 °C)) over 6 weeks. The intensity of UV-B was varied throughout the day to mimic diel variation in UV-B irradiance. Polyp survival, asexual reproduction and YII were measured. In the current and future-high UV-B treatments, more polyps were produced in 25 °C than 28 °C. This pattern, however, was reversed under future-low UV-B conditions, where more polyps were produced at 28 °C. YII was highest under current summer conditions and future conditions of low UV-B and increased temperature. YII, however, was reduced under high UV-B conditions but was further reduced with warming. Our results suggest that although Cassiopea polyps may survive elevated UV-B and warming conditions, they are unlikely to thrive. If, however, UV-B radiation decreases then ocean warming may facilitate increases in Cassiopea populations.

ZmMBD101 is a DNA-binding protein that maintains Mutator elements chromatin in a repressive state in maize.

In maize (Zea mays), as well as in other crops, transposable elements (TEs) constitute a great proportion of the genome. Chromatin modifications play a vital role in establishing transposon silencing and perpetuating the acquired repressive state. Nucleosomes associated with TEs are enriched for dimethylation of histone H3 at lysine 9 and 27 (H3K9me2 and H3K27me2, respectively), signals of repressive chromatin. Here, we describe a chromatin protein, ZmMBD101, involved in the regulation of Mutator (Mu) genes in maize. ZmMBD101 is localized to the nucleus and contains a methyl-CpG-binding domain (MBD) and a zinc finger CW (CW) domain. Transgenic lines with reduced levels of ZmMBD101 transcript present enhanced induction of Mu genes when plants are irradiated with UV-B. Chromatin immunoprecipitation analysis with H3K9me2 and H3K27me2 antibodies indicated that ZmMBD101 is required to maintain the levels of these histone repressive marks at Mu terminal inverted repeats (TIRs) under UV-B conditions. Although Mutator inactivity is associated with DNA methylation, cytosine methylation at Mu TIRs is not affected in ZmMBD101 deficient plants. Several plant proteins are predicted to share the simple CW-MBD domain architecture present in ZmMBD101. We hypothesize that plant CW-MBD proteins may also function to protect plant genomes from deleterious transposition.

Acclimation to UV-B radiation and visible light in Lactuca sativa involves up-regulation of photosynthetic performance and orchestration of metabolome-wide responses.

UV-B radiation is often viewed as a source of stress for higher plants. In particular, photosynthetic function has been described as a common target for UV-B impairment; yet as our understanding of UV-B photomorphogenesis increases, there are opportunities to expand the emerging paradigm of regulatory UV response. Lactuca sativa is an important dietary crop species and is often subjected to rapid sunlight exposure at field transfer. Acclimation to UV-B and visible light conditions in L. sativa was dissected using gas exchange and chlorophyll fluorescence measurements, in addition to non-destructive assessments of UV epidermal shielding (SUV ). After UV-B treatment, seedlings were subjected to wide-range metabolomic analysis using liquid chromatography hybrid quadrupole time-of-flight high-resolution mass spectrometry (LC-QTOF-HRMS). During the acclimation period, net photosynthetic rate increased in UV-treated plants, epidermal UV shielding increased in both subsets of plants transferred to the acclimatory conditions (UV+/UV- plants) and Fv /Fm declined slightly in UV+/UV- plants. Metabolomic analysis revealed that a key group of secondary compounds was up-regulated by higher light conditions, yet several of these compounds were elevated further by UV-B radiation. In conclusion, acclimation to UV-B radiation involves co-protection from the effects of visible light, and responses to UV-B radiation at a photosynthetic level may not be consistently viewed as damaging to plant development.

Responses to Uv-B Exposure by Saplings of the Relict SpeciesDavidia involucrataBill are Modified by Soil Nitrogen Availability

ABSTRACT: Climate change scenarios suggest that plants will be exposed to increasing levels of ultraviolet radiation in the future. The dove tree, Davidia involucrata Bill (Davidiaceae) is a rare and endangered tree species in China. Its distribution is predicted to become more montane as the climate warms, exposing it to higher levels of UV-B and different soil conditions. We compared the effects of glasshouse ambient (7.08 uW cm-2) and increased (13.93 uW cm-2) UV-B on survivorship, secondary metabolites indicative of radiation damage, and putative defensive responses of Davidia involucrata saplings growing under current and increased nitrogen conditions (5 and 25 g m-2 a-1 N). Mortalities were higher among plants exposed to increased UV-B, but only in soils with high supplementary nitrogen. Increases in compounds associated with defense against radiation were more frequently recorded under high supplementary nitrogen conditions. This rare and localised plant is highly sensitive to elevated UV-B when gr...

Temperature and UV-B insensitive performance in tadpoles of the Ornate burrowing frog: an ephemeral pond specialist

Animals may overcome the challenges of temperature instability through behavioural and physiological mechanisms in response to short- and long-term temperature changes. When ectotherms face the challenge of large diel temperature fluctuations, one strategy may be to reduce the thermal sensitivity of key traits in order to maintain performance across the range of temperatures experienced. Additional stressors may limit the ability of animals to respond to these thermally challenging environments through changes to energy partitioning or interactive effects. Ornate burrowing frog (Platyplectrum ornatum) tadpoles develop in shallow ephemeral pools that experience high diel thermal variability (>20°C) and can be exposed to high levels of UV-B radiation. Here, we investigated how development in fluctuating versus stable temperature conditions in the presence of high or low UV-B radiation influences thermal tolerance and thermal sensitivity of performance traits of P. ornatum tadpoles. Tadpoles developed in either stable (24°C) or fluctuating temperatures (18-32°C) under high or low UV-B conditions. Tadpoles were tested for upper critical thermal limits, thermal dependence of resting metabolic rate and maximum burst swimming performance. We hypothesised that developmental responses to thermal fluctuations would increase thermal tolerance and reduce thermal dependence of physiological traits, and that trade-offs in the allocation of metabolic resources towards repairing UV-B-induced damage may limit the ability to maintain performance over the full range of temperatures experienced. We found that P. ornatum tadpoles were thermally insensitive for both burst swimming performance, across the range of temperatures tested, and resting metabolic rate at high temperatures independent of developmental conditions. Maintenance of performance led to a trade-off for growth under fluctuating temperatures and UV-B exposure. Temperature treatment and UV-B exposure had an interactive effect on upper critical thermal limits possibly due to the upregulation of the cellular stress response. Thermal independence of key traits may allow P. ornatum tadpoles to maintain performance in the thermal variability inherent in their environment.