The mainstream approach of GNN-based recommendation aggregates high-order ID information associated with the node in the user-item graph. The aggregation pattern using ID as signal has two disadvantages: lack of textual semantics and the impact of interaction noise. These disadvantages pose a threat to effectively learn user preferences, especially in capturing intricate user-item semantic relationships. Although large language models (LLMs) allow the integration of rich textual information into recommenders and have had groundbreaking applications in recommender systems, current works need to bridge the gap between different representation spaces. This is because LLMs-based methods align the representations of GNN-based models only by using text embedding of LLM, leading to unsatisfactory results. To address this challenge, we propose a D enoising A lignment framework with L LMs for GNN-based R ecommenders (DALR), which aims to align structural representation with textual representation and mitigate the effects of noise. Specifically, We propose a modeling framework that integrates the representation of graph structure with textual information from LLMs to capture intricate user-item interactions. We also suggest an alignment paradigm to enhance representation performance by aligning semantic signals from LLMs and structural features from GNN models. Additionally, we introduce a contrastive learning scheme to relieve the impact of noise and improve model performance. Extensive experiments on public datasets demonstrate that our model consistently outperforms the state-of-the-art methods. DALR achieves improvements ranging from 2.82% to 12.20% in Recall@5 and from 1.04% to 3.48% in NDCG@5 compared to the strongest baseline model, using the Steam dataset as an example.