Urease Activity Research Articles

Effect of acid type on biomineralization of soil using crude soybean urease solution

The one-phase-low-pH method is a simple, efficient, and user-friendly biogrouting technique that can effectively improve the biomineralization of enzyme-induced carbonate precipitation (EICP) using free urease enzyme. One of the most significant advantages of this method is its capacity to effectively delay calcium carbonate (CaCO3) precipitation by reducing the pH of the solution through the addition of acid. This prevents bioclogging during the biogrouting process and improves the biomineralization effect. However, the biomineralization of the one-phase-low-pH based EICP method may be influenced by the specific acid used. To investigate the impact of acid type on the one-phase-low-pH EICP method using crude soybean urease solution (CSUS), four types of acids, including hydrochloric acid (HCl), nitric acid (HNO3), acetic acid (CH3COOH), and lactic acid (C3H6O3), were used to adjust the pH of CSUS. A series of macroscopic and microscopic experiments were conducted to evaluate the effect of acid type on the one-phase-low-pH EICP method. The results indicate that the acid has an inhibition on the urease activity (UA) of CSUS. Among the acids tested, HNO3 exhibits the most pronounced inhibitory effect on the UA of CSUS, followed by HCl, and the least pronounced inhibitory effect for CH3COOH and C3H6O3 under the same pH conditions. Meanwhile, CH3COOH and C3H6O3 could provide a longer delay duration of CaCO3 precipitation than HNO3 and HCl. Therefore, the one-phase-low-pH EICP method based on CH3COOH and C3H6O3 can significantly improve the effective biocementation depth compared to that based on HNO3 and HCl. Nevertheless, the different types of acids appear to have no obvious effect on the polymorph and crystalline of the precipitated CaCO3 crystals.

Miniaturized device to measure urease activity in the soil interstitial fluid using wenner method

This paper presents a microdevice developed to measure the electrical conductivity of a liquid or a saturated porous medium using Wenner method. It is developed in the context of biocementation as soil improvement technique, which is used in Civil Engineering applications to produce calcium carbonate through bacterial or enzymatic activity, replacing the use of other binder materials such as cement or resins, and therefore reducing carbon footprint. The microdevice was used to measure urease activity in the soil interstitial fluid, to investigate if bacterial activity could be affected by the presence of the particles and tortuosity from pore geometry. Such analysis is important to understand biocementation mechanism inside the soil and helps to improve the design of such treatment solutions. The device is basically a squared reservoir printed in polypropylene using a 3D printing machine, incorporating stainless steel electrodes in its base. The electrical resistivity was computed adopting Wenner method, by connecting 4 PCB electrodes to a signal generator and an oscilloscope for measuring the voltage when a AC current of 1 mA was applied. Both square and sinusoidal waves with 5 kHz frequency were selected among other frequencies. The measurements were adjusted during the calibration of the microdevice, done using standard salt solutions with known electrical conductivity measured using an electrical conductivity probe. For the bacterial activity measurements, the bacterial and urea solutions were added to a uniform-graded size quarzitic sand (average diameter 0.3 mm) placed inside the microdevice and covering completely the electrodes. Bacterial activity was not affected by the presence of the sand, which confirms that this treatment is effective for this type of soils.

Biochar combined with humic acid improves the soil environment and regulate microbial communities in apple replant soil

Apple replant disease (ARD) negatively affects plant growth and reduces yields in replanted orchards. In this study, biochar and humic acid were applied to apple replant soil. We aimed to investigate whether biochar and humic acid could promote plant growth and alleviate apple replant disease by reducing the growth of harmful soil microorganisms, changing soil microbial community structure, and improving the soil environment. This experiment included five treatments: apple replant soil (CK), apple replant soil with methyl bromide fumigation (FM), replant soil with biochar addition (2 %), replant soil with humic acid addition (1.5 ‰), and replant soil with biochar combined with humic acid. Seedling biomass, the activity of antioxidant enzymes in the leaves and roots, and soil environmental variables were measured. Microbial community composition and structure were analyzed using ITS gene sequencing. Biochar and humic acid significantly reduced the abundance of Fusarium and promoted the recovery of replant soil microbial communities. Biochar and humic acid also increased the soil enzymes activity (urease, invertase, neutral phosphatase, and catalase), the plant height, fresh weight, dry weight, the activity of antioxidant enzymes (superoxide dismutase, peroxidase, and catalase), and root indexes of apple seedlings increased in replant soil. In sum, We can use biochar combined with humic acid to alleviate apple replant disease.

Jack bean urease inhibition by different root fractions of Cleome gynandra L – Kinetic mechanism and computational molecular modelling

Natural products with urease inhibiting potentialities would be valuable for enhancing nitrogen fertilizer formulations and developing new therapeutics against infectious diseases. Main focus of this research was to assess the inhibitory impact of various parts of Cleome gynandra (Cleomaceae) on jack bean urease activity, identify the responsible compounds, and ascertain their mode of enzyme inhibition and interactions with urease enzyme. Urease inhibitory potentiality of different plant parts of C. gynandra was determined using the phenol-hypochlorite method and mode of enzyme inhibition by Lineweaver-Burk kinetic analysis. LC-HRMS was carried out to identify the compounds of the active fractions. Molecular docking and simulations were executed to find out the binding affinity and interaction pattern of the isolated compounds at the active site of urease enzyme and to verify stability of protein-inhibitor complexes. The root of C. gynandra exhibited highest urease inhibitory potentiality with IC50 value of 1.529 mg/ml compared with leaf and stem. Among the different root fractions, water fraction revealed maximum anti-urease activity with IC50 values of 1.477 mg/ml followed by methanol (1.655 mg/ml) and acetone fractions (1.955 mg/ml). Inhibition kinetics indicated that these fractions were strong inhibitors of urease and exhibited a non-competitive mode of inhibition with Ki values of 184.911 µg/ml, 147.34 µg/ml, and 233.75 µg/ml respectively at 1000 mg/L concentration. LC-HRMS analysis confirmed the occurrence of glucocapparin, fluticasone propionate and lauryl hydrogen sulfate etc. in water fraction. Molecular modelling and simulation study suggested strong and stable interactions between the specified compounds of water fraction and active site of urease. Hence, the water fraction of C. gynandra roots represent a valuable source of natural urease inhibitors, for possible therapeutic applications and sustainable agricultural practices.

Algerian Prickly Pear Seed By-Products: Fatty Acids Composition, Antioxidant, Enzyme Inhibitory Activities towards Tyrosinase, Urease, α-Amylase, and Cholinesterase, along with the Ability to Protect from Thermal Protein Denaturation.

Prickly pear seed is a source of the most expensive oil in the world, which is rich in vitamins and polyunsaturated fatty acids. Its extraction generates a large quantity of press cake. These two by-products need to be valued. The current study aimed to assess the fatty acid composition of oil and the phytochemical composition of press cake. In addition, the antioxidant and the inhibition of thermal protein denaturation effects of both Algerian seed by-products were evaluated with their inhibitory action against the activities of urease, tyrosinase, α-amylase, and cholinesterase enzymes. The GC MS analysis result revealed the richness of our oil in linoleic (74%) and palmitic (13%) acids methyl esters, respectively. The chemical composition of press cake was characterized by a high value of dry matter (94.94 ± 0.05%), especially the carbohydrates (85.13 ± 0.94%). The results of antioxidant activity presented by IC50 and A0.5 ranged from 7.51 ± 0.03 to 88.10 ± 0.92 µg/mL. Furthermore, the IC50 values were 40.19 ± 1.21 and 61.18 ± 0.03 µg/mL in thermal protein denaturation assay, and ranging from 22.97 ± 0.72 to 385.99 ± 0.27 µg/mL for the inhibition of enzymatic activities. These results indicate that the studied oil can be one of the strongest oils for its impressive effects and also encourage us to reuse its press cake in feed livestock.

Isolation and Characterisation of Pink Pigmented Facultative Methylotrophs (PPFM) from Malaysian Ulam Leaves

This study aims to isolate and characterise the Pink Pigmented Facultative Methylotrophs (PPFM) bacteria from the leaves of common Malaysian table salad (ulam). The colonies of PPFM bacteria were obtained using selectively modified Pseudomonas agar based on the appearance of the pink pigment colony. The three selected isolates labelled OJ4, OJ154 [Oenanthe javanica (Blume) DC.] and ML8 [from Melicope lunu-ankenda (Gaertn.) T. G. Hartley] were chosen for characterisation. The result showed the PPFM bacteria colonies (log CFU/g) at the leaf surface of C. caudatus are 4.4 ± 0.1, significantly higher than O. javanica, 3.8 ± 0.2, and M. lunu-ankenda, 3.2 ± 0.1. The selected isolates belong to the Gram-negative group, motile with rod shape with size [length (l) × width (w)] in µm unit 4.3 ± 1.1 × 1.6 ± 0.6, 5.4 ± 0.2 × 1.2 ± 0.1, and 3.5 ± 0.7 × 1.0 ± 0.0, respectively. They show positive urease, catalase, and oxidase activities, while none of them can degrade starch, gelatine, or cellulose, as well as glucose fermentation (MR test) and metabolism actions (VP test), producing indole and hydrogen sulphide gaseous. Only isolate OJ154 demonstrates positive casein hydrolysis and nitrate reduction activities, while only isolate ML8 can utilise citrate but not in lipid degradation. Their sequence analysis of the 16S rRNA indicated that OJ4 and ML8 are Methylobacterium radiotolerans with a similarity of 99%, whereas, OJ154 is Methylorubrum salsuginis with a similarity of 99%. To conclude, PPFM bacteria from the leaves of C. caudatus, O. javanica, and M. lunu-ankenda have been isolated and characterised in particular.

Optimization of peapod peel biochar amendment for sustainable agriculture by surface response methodology towards water-food-environment nexus

Valorization of food waste to biochar offers economic and environmental opportunities for sustainable agriculture production. Peapod (Pisum sativum) peel is a high-content lignocellulose vegetable waste and was used in this study to produce biochar through pyrolysis temperatures of 350, 450, and 550 °C, with a heating rate of 5 °C/min for 30 min and thereafter characterized for its various properties. The biochar produced at 350 °C, exhibiting the best soil amendment properties was used for pot testing with mung bean (Vigna radiata). The optimization of plant growth, soil water retention capacity, and microbial activity were determined using response surface methodology (RSM) with three design factors: (a) biochar loading rates (0 %, 0.5 %, and 1 %), (b) temperature (30–40 °C), and (c) quantity of water supplied (50–60 mL/day). The results showed that applying 0.5 % biochar with a water supply of 55 mL/day at 35 °C resulted in optimal responses for seed germination, plant height, and leaf development. Applying 1 % biochar with a water supply of 55 mL/day at 35 °C showed optimal responses for leaf area and leaf chlorophyll content. Stomatal conductance and catalase activity showed optimal responses for 1 % biochar applied with a water supply of 60 mL/day at 40 °C. Urease activity and water retention capacity showed optimal responses when 1 % biochar was applied with a water supply of 60 mL/day at 30 °C, respectively. This study demonstrates the potential use of peapod peel biochar in water-food-environment nexus, with a lower dose and lesser volume of water demand.

Characterization of urease active calcite-producing strain YX-3 combined with the whole genome

Urease found in a wide range of microorganisms plays a vital role in ureolytic induced calcite precipitation (UICP). However, the genomic information on urease-producing strains is limited, and there is a need for further in-depth studies on aspects such as the regulation of urease activity by nickel ligand residues. The present study delved into the elucidation of urease activity in a newly isolated strain YX-3 coupled with nickel-ligand residues by employing the genetic architecture of biomineralization-controlled growth, molecular docking, molecular dynamics simulation (MDS), and site-directed mutagenesis. Genome-wide sequencing showed the presence of urease gene clusters, comprising structural genes ureA, ureB, and ureC, alongside auxiliary genes ureD, ureE, ureF, and ureG. RT-qPCR analysis showed that the addition of NiCl2 resulted in a significant up-regulation of ureC expression. His267, His294, and Gly325 in the domain of UreC were further proved to coordinate with nickel ions and urea simultaneously through homology modeling and molecular docking, and molecular dynamics simulations (MDS) showed the urease-urea docking complexes exhibited degressive binding stability by four metrics including root mean square deviations (RMSD) when those residues were mutated into alanine respectively. Western blotting exhibited that mutations of H267A, H294A, and G325A led to a reduction in the relative expression of urease, wherein urease activity was about 62%, 45%, and 20% times that of the wild type (WT), respectively. The overexpression results further confirmed the importance of these residues for urease activity and CaCO3 precipitation. These results would help to deepen the understanding of urease-producing strains at a molecular level and expand the theoretical basis for modulating urease activity.

Plant growth promoting endophyte modulates soil ecological characteristics during the enhancement process of cadmium phytoremediation

Endophyte assisted phytoremediation of cadmium (Cd) contaminated soil represents a promising strategy. However, the precise soil ecological regulatory mechanisms by which endophyte enhance the Cd phytoextraction remain unclear. Here, we employed the plant growth promoting endophyte (PGPE) Pseudomonas sp. E3, which has been validated to effectively enhance Cd extraction in Solanum nigrum L., to investigate its regulatory mechanism on soil ecology. The results demonstrated that while PGPE inoculation resulted in minimal alterations to the physicochemical properties of the bulk soil, it led to a notable increase in acid phosphatase activity by 17.86% and urease activity by 24.85% in the rhizosphere soil. This, in turn, significantly raised the available nitrogen and phosphorus contents by 16.93% and 21.27%, respectively, in the rhizosphere soil. Additionally, PGPE inoculation effectively replenished the bioavailable fractions of Fe and Cd, which had been depleted due to root uptake. Importantly, the inoculation specifically augmented the abundance of biomarkers p_Patescibacteria, f_Saccharimonadales, and g_Saccharimonadales in the rhizosphere soil. These biomarkers exhibited a significant positive correlation with the available nutrient and metal element contents. Moreover, the co-occurrence network analysis demonstrated that the inoculation resulted in a simplified bacterial community network, which may have facilitated community synergism by displacing bacteria with a negative association. This regulation appears to occur independently of PGPE colonization. Overall, our findings suggested that PGPE also exerts a regulatory influence on soil ecological features, significantly aiding hyperaccumulators in nutrient acquisition and heavy metal accumulation.

Theoretical Study on the Disparate Spatial Arrangement of 3’,4’,5,7-tetrahydroxy-3-flavene Towards Jack Bean Urease Enzyme Active Site

Urease enzyme plays crucial role in the hydrolysis of urea. Excessive hydrolysis of urea can have significant impacts on the environment. In recent years, there has been growing interest in identifying natural compounds that can inhibit urease activity. Flavonoids, phytochemical compounds present in plants, have shown promising potential as urease inhibitors. Studies have revealed that certain flavonoids, such as 3’,4’,5,7-tetrahydroxy-3-flavene, abbreviated as H4FLA for convenient, exhibit potent inhibition of urease, surpassing the efficacy of well-known synthetic inhibitors. In the present study, we report quantum mechanical calculations that mainly investigate the interaction of H4FLA towards urease at disparate spatial arrangement. It was found that the most favourable position between H4FLA and active site of urease has interaction energy of -3.80 eV. Topology analysis revealed that there is no typical covalent bond found between atoms involved in the interaction. Only weak interactions were detected. The hydroxyl groups with highest (negative) local potential throughout the structure, contribute mainly to the formation of non-covalent interaction with the nickel centers, indicating their potential involvement in the inhibitory activity of flavonoids against urease.

Gypsum and organic materials improved soil quality and crop production in saline-alkali on the loess plateau of China

Arable soil and crop productivity are severely affected by salinization. Therefore, soil amendments are an important measure for improving saline-alkali soil for agricultural development. Desulfurized gypsum is a common soil amendment that has been used repeatedly alongside organic materials to improve the biological, physical, and chemical properties of saline soil. This study takes the typical saline-alkali farmland soil in Yulin as the research object, and five treatments were established: a blank treatment (CK), a single application 2.5 t ha−1 of desulfurized gypsum (T), 2.5 t ha−1 of desulfurized gypsum and 1.5 t ha−1 of green manure (TL), application 2.5 t ha−1 of desulfurized gypsum and 1.5 t ha−1 of straw (TS), and 2.5 t ha−1 of desulfurized gypsum and 1.5 t ha−1 of organic fertilizer (TV). The results show that the TV treatment achieved a significant improvement in soil nutrients, organic carbon, enzyme activity, and maize yield. In 2022 (2023), the compared of organic matter, TN, TP, TK, AP, and AK increased significantly compared with the CK treatment when the TV treatment was applied. Soil phosphatase activity (SPA), soil urease activity (SUA) and soil sucrase activity (SSA) significantly higher in the TV treatment compared with the other treatments and increased significantly over the two-year period. Furthermore, soil organic carbon (SOC), easily oxidizable organic carbon (EOC), dissolved organic carbon (DOC) and microbial biomass carbon (MBC) also significantly increased with the 2022 and 2023 TV treatments. Correlation analysis revealed a positive relationship between maize yield and soil nutrients, organic carbon, and enzyme activity (P < 0.05). Thus, the TV treatment was determined to be the optimal treatment for soil improvement. This conclusion was supported by analyses performed using membership function analysis, gray correlation analysis, and entropy TOPSIS model evaluation. Therefore, this method increases soil quality, improves soil fertility, achieves high maize yields, and provides a scientific basis for enhancing and utilizing saline-alkali soil in the Loess Plateau.

Effect of Streptomyces costaricanus Strain A-m1 as a Bioinoculant on Tea Garden Soil and Tea Quality

Chemical fertilization is usually associated with some unreasonable problems that affect the sustainable production of tea gardens. The micro-organism fertilizer created from plant growth-promoting microbes (PGPM) integrates the beneficial properties of functional micro-organisms and bioinoculants. Application of PGPM can activate soil nutrients, prevent soil-borne diseases, and promote crop growth, thus improving crop quality and yield. In this study, the effects of bioinoculants composed of Streptomyces costaricanus strain A-m1 on the properties, enzyme activity, and micro-organisms of soil in a tea garden and on the chemical composition and production of tea were investigated. The present results showed that the application of A-m1 bioinoculant could increase the activities of urease, protease and catalase, the content of alkali-hydrolyzable nitrogen, and the number of bacteria, fungi, and actinomycetes in tea garden soil. After application, the free amino acid content, 100-bud weight, and bud density of spring tea were also elevated. In the year of fertilization, the treatment composed of 70% bioinoculant + 30% chemical fertilizer showed the best effects on soil physical and chemical properties, enzyme activity, culturable microbial counts, and tea quality. A high ratio of organic to chemical fertilizer coapplication can significantly improve the growing conditions for tea plants, reduce the use of chemical fertilizers, improve the efficiency of nutrient utilization, and enhance both the yield and quality of tea. One year after fertilization, the 50% bioinoculant + 50% chemical fertilizer was more conducive to enhancing the quality of tea, while the 30% bioinoculant + 70% chemical fertilizer was more beneficial for improving the production of tea. A high ratio of chemical to bioinoculant coapplication is more favorable for maintaining high yield and quality in tea production, achieving healthy and sustainable tea garden management. The application of A-m1 bioinoculant will reduce the use of chemical fertilizers, improve the utilization efficiency of soil nutrients, and increase the production and quality of tea, contributing to the sustainable production of tea gardens.

Synthesis and anti-ureolitic activity of Biginelli adducts derived from formylphenyl boronic acids

Urease is a metalloenzyme that contains two Ni(II) ions in its active site and catalyzes the hydrolysis of urea into ammonia and carbon dioxide. The development of effective urease inhibitors is crucial not only for mitigating nitrogen losses in agriculture but also for offering an alternative treatment against infections caused by resistant pathogens that utilize urease as a virulence factor. This study focuses on synthesizing and investigating the urease inhibition potential of Biginelli Adducts bearing a boric acid group. An unsubstituted or hydroxy-substituted boronic group in the Biginelli adducts structure enhances the urease inhibitory activity. Biophysical and kinetics studies revealed that the best Biginelli adduct (4e; IC50 = 132 ± 12 µmol/L) is a mixed inhibitor with higher affinity to the urease active site over an allosteric one. Docking studies confirm the interactions of 4e with residues essential for urease activity and demonstrate its potential to coordinate with the nickel atoms through the oxygen atoms of carbonyl or boronic acid groups. Overall, the Biginelli adduct 4e shows great potential as an additive for developing enhanced efficiency fertilizers and/or for medical applications.

Faba bean in crop rotation shapes bacterial and fungal communities and nutrient contents under conventional tillage of triticale

Legumes in cropping sequence can strongly moderate soil biodiversity and its biochemical status, which could influence soil fertility and productivity. However, their impact on soil microbes and their relationships with soil chemical variables during the subsequent crop growth is not understood enough. In this study, we analyzed the changes in bacterial and fungal communities structure through 16S rRNA and ITS amplicon sequencing, respectively, across crop rotation with faba bean (faba bean-wheat-triticale, F) and without faba bean (wheat-wheat-triticale, W). Rhizosphere and bulk soil samples were taken during the triticale growth stages (stem elongation and maturity). Soil enzymatic activity and chemical properties were also determined. Study factors (crop rotation, soil compartment, growth stage) affected N, C, and P transformations, as indicated by the activity of soil enzymes, and F was more beneficial than W for protease, urease, and acid phosphomonoesterase activities, as opposed to cellulase activity. Changes in the chemical properties led to the shift in soil microbial communities with different bacterial and fungal communities' responses. F treatment enhanced the abundance of the bacterial genera representatives such as Streptomyces and Candidatus Udaeobacter while suppressing the abundance of Jatrophihabitans and Terrabacter. Crop rotation significantly influenced fungal genera and a greater abundance of Helgardia, Pseudogymnoascus, Monocillium, Fusarium, Chaetomium, and Vishniacozyma under F than W was noted and the adverse situation was noted for Peziza and Rhizopus. Rotation type significantly affected the alfa-diversity of the fungal, but not bacterial community. Beta-diversity analyses (nMDS, cluster) indicated that the main factor grouping samples were soil compartment and growth stage for the bacterial and fungal microbiome, respectively. The PERMANOVA results revealed significant effects of all factors on bacterial and fungal microbiomes. Different soil chemical variables governed bacterial and fungal communities. Corg, pH, P, Mg, and Corg, pH were the most important soil factors regulating bacterial and fungal community structure by crop rotation, respectively. Bacterial and fungal communities were more related to the content of Ntot in rotation with than without faba bean. The findings of this study contribute to a deeper insight into the relation between the faba bean in cropping sequence and soil microbiome, and modulation crucial soil conditions for the productivity of the successive crop.

The Effect of Intercropping with Different Leguminous Green Manures on the Soil Environment and Tea Quality in Tea Plantations.

Intercropping with green manure is a soil-sustainable cultivation practice that has demonstrated positive impacts on tea growth and the soil environment in tea plantations. Nevertheless, research examining the effect of leguminous green manure varieties in tea plantations is scarce. This study aimed to analyze the tea quality and soil environment components in response to intercropping with three distinct leguminous green manures, Cassia sophera cv. Chafei 1 (CF), Sesbania cannabina (Retz.) Pers. (SC), and Chamaecrista rotundifolia (Pers.) Greene (CR), with 70% chemical fertilizer, and compare them to non-intercropped green manures with 100% chemical fertilizer (CK) in tea plantations. The findings indicated that intercropping with SC increased the amino acids content of tea leaves, the soil organic carbon (SOC), the soil acid phosphatase (ACP), the soil acid protease (ACPT), and the bacterial diversity compared to the CK treatment. Intercropping with CR improved the ACP activity and bacterial diversity while intercropping with CF improved the polyphenols. Proteobacteria, Acidobacteria, Actinomycetes, and Firmicutes were identified as the dominant bacterial taxa in tea plantations with intercropped green manure. A strong positive correlation was indicated between the SOC contents and the amino acids content in tea leaves after intercropping. A canonical correspondence analysis indicated significant associations between the ACP and the urease activity, and between the ACP and ACPT, and both were closely linked to SC. This finding provides an explanation that intercropping with SC may positively affect tea quality by influencing the SOC content, the soil enzyme activity, and the soil bacterial diversity. Green manure intercropping may replace part of chemical fertilizers, improve the soil environment in tea gardens, and enhance the quality of tea. These findings offer a theoretical reference for selecting leguminous green manure and advancing the sustainable development of tea plantations.

Comprehensive Analysis of Microbiomes and Metabolomics Reveals the Mechanism of Adaptation to Cadmium Stress in Rhizosphere Soil of Rhododendron decorum subsp. Diaprepes

The toxicity of cadmium (Cd) not only affects the growth and development of plants but also has an impact on human health. In this study, high-throughput sequencing and LC-MS were conducted to analyze the effect of CdCl2 treatment on the microbial community and soil metabolomics of rhizosphere soil in Rhododendron decorum subsp. diaprepes. The results showed that CdCl2 treatment reduced the quality of the rhizosphere soil by significantly decreasing the soil organic carbon (SOC) content, urease, and invertase activities, increasing the percentage of the exchangeable Cd fraction. CdCl2 treatment did not significantly change the Chao1 and Shannon indices of bacterial and fungal communities in the rhizosphere soil. R. decorum was more likely to recruit Cd-resistant bacteria (e.g., Proteobacteria, Chloroflexi) and increase the abundance of Cd-resistant fungi (e.g., Basidiomycota, Rozellomycota). Moreover, CdCl2 treatment decreased the content of secondary metabolites associated with plants’ resistance to Cd. Rhizosphere soil urease, invertase activities, alkaline phosphatase (ALP), SOC, total potassium (TK), Cd, and nitrate nitrogen (NN) were the main drivers of the composition of rhizosphere bacterial and fungal communities. CdCl2 treatment weakened the relationships among bacterial/fungi, differential metabolites, and physicochemical properties in rhizosphere soil.

Seeding improves the strength of bio-tiles grown with microbially induced calcium carbonate precipitation

Bio-tiles are a biobased alternative to conventional tiles that utilise a promising technology called microbially induced calcium carbonate (CaCO3) precipitation (MICP). This technology has low energy requirements and also sequesters carbon. Bio-tiles have been made in previous work using a submersion method, however, the process required additives such as 0.3 M magnesium chloride to achieve bio-tiles that meet international standards. The current study aimed to improve the bio-tile strength properties with CaCO3 crystal seeding and a pumping method instead of the use of magnesium that also increases ionic strength. With this technique, cementation solution containing the required calcium and urea for the MICP reaction was pumped through a sealed mould in a series of programmed treatments. The highest concentration of ureolytic Sporosarcina pasteurii with an effective urease activity of 40 mmol NH4-N/L·min was found to be most beneficial to the breaking strength of the bio-tiles, as were the shortest retention times of 1 h between treatments. Seeding with CaCO3 crystals offered significant benefit to the MICP process. Pre-seeding of the geotextiles was explored and the mass of seeds initially present on the geotextiles was found to have a direct improvement on the breaking strength of 21–82 %, increasing with seed loading.The highest CaCO3 seed loading tested of 0.072 g seeds/cm2 geotextile resulted in bio-tiles with a breaking strength of 940 ± 92 N and a modulus of rupture of 16.4 ± 1.7 N/mm2, meeting international targets for extruded tiles with 6–10 % water absorption. When a seed loading of 0.021 g/cm2 was used instead, bio-tiles meeting targets for tiles with a water absorption of >10 % were produced at 628 ± 18 N and 10.5 ± 1.1 N/mm2.

Nickel and Soil Fertility: Review of Benefits to Environment and Food Security

Nickel (Ni) is an essential micronutrient for plants, responsible for metabolizing urea nitrogen (urea-N) by urease and mitigating abiotic and oxidative stresses through the glyoxalase (Gly) and glutathione (GSH) cycles. However, excess Ni is toxic to flora at >100 mg kg−1, except for hyperaccumulators that tolerate >1000 mg kg−1 Ni. This review discusses the benefits of Ni nutrient management for soil fertility, improving food security, and minimizing adverse environmental impacts from urea overapplication. Many farming soils are Ni deficient, suggesting that applying 0.05–5 kg ha−1 of Ni improves yield and urea-N use efficiency. Applied foliar and soil Ni fertilizers decrease biotic stresses primarily by control of fungal diseases. The bioavailability of Ni is the limiting factor for urease synthesis in plants, animal guts, and the soil microbiome. Improved urease activity in plants and subsequently through feed in livestock guts reduces the release of nitrous oxide and nitrite pollutants. Fertilizer Ni applied to crops is dispersed in vegetative tissue since Ni is highly mobile in plants and is not accumulated in fruit or leafy tissues to cause health concerns for consumers. New methods for micronutrient delivery, including rhizophagy, recycled struvite, and nanoparticle fertilizers, can improve Ni bioavailability in farming systems.

Isolation and identification of non-tuberculous mycobacteria from aquarium fish in Ilam, Iran

Non-tuberculous mycobacteria (NTM) are among the most important pathogens in wild, captive, marine, and freshwater fish species. So, it is important to consider fish as the primary source of infection for aquarium fish and humans. The present study analyzed the occurrence of NTM in aquarium fish in Ilam, west of Iran. In total, 50 samples of infected fish were collected from different aquariums. Following initial sample processing, sediment of each sample was inoculated into Lowenstein-Jensen and Herrold egg media. The positive colonies were investigated with, growth rate, pigmentation, colony morphology, niacin accumulation, nitrate reduction, catalase activity, urease activity, and arylsulfatase activity. Also, molecular identification was carried out by sequencing of heat shock protein 65 kD gene (hsp65) sequence analysis. According to our results, NTM were isolated from 13 samples (26%), comprising 6 (46.2%) rapid growing, and 7 (53.8%) slow growing mycobacteria. In addition, Mycobacterium marinum was the most common NTM isolated in ornamental fish, which is potentially dangerous for both fish and humans. In conclusion, the current study indicates that ornamental fish play a significant role as a source of NTM.

Probiotic‐rich bean sprouts alleviate oxidative stress and inflammation induced by a diet with an increased fat‐to‐carbohydrate energy ratio

SummaryThe rat's model evaluated the function of sprouted beans enriched with probiotic Lactiplantibacillus plantarum 299v in alleviating dyslipidaemia, inflammation and disturbed redox homeostasis caused by a high‐lard diet. Sprouted beans improved the total antioxidant capacity of serum and liver, regardless of whether the feeds had a higher content of low‐molecular antioxidants or were additionally enriched with probiotics. The reduction of inflammation (lowered level of C‐reactive protein) and restoration of triglycerides and total cholesterol to the levels recorded in the control group (AIN‐93M) were especially observed in the group supplemented with the control adzuki bean. Introducing sprouted legumes (both the control and probiotic‐rich) improved microbiota activity affected by a high‐lard diet. The highest, desirable reduction of urease (by 80%) and tryptophanase (by 78%) activity was found in the groups fed with probiotic‐rich adzuki and mung bean sprouts respectively. Sprouted beans improve the metabolism of individuals subjected to a diet with an increased fat‐to‐carbohydrate energy ratio, especially concerning oxidative stress injury and microbiota activity.