Abstract To identify risk variants for upper aero-digestive tract (UADT) cancers, we performed a genome-wide association study of 2,091 UADT cancer cases and 8,334 controls followed by replication of 20 variants in an additional 6,545 UADT cancer cases and 7,892 controls. Five common variants presented evidence for significant association in the replication series (one sided p ≤ 0.005 - preplication) and combined analysis (p ≤ 5×10−7 - pcombined). Three variants were in the alcohol dehydrogenase (ADH) gene cluster on 4q23 (rs1573496-ADH7, preplication=7×10−10 /pcombined=5×10−17 rs1229984-ADH1B, preplication=3×10−10 pcombined=5×10−21 and rs698-ADH1C, preplication=0.003 pcombined=3×10−7). The fourth variant (rs4767364, preplication=4×10−4/pcombined=7×10−8) was located in an extended linkage disequilibrium region at 12q24 that contains the aldehyde dehydrogenase 2 (ALDH2) gene and appears to have effects similar, albeit more modest, to that observed with heterozygote ALDH2 null allele (rs671) common in Asian populations. The fifth variant (rs1494961, preplication=9×10−6 pcombined=2×10−8) was located near DNA repair related genes HEL308 and FAM175A (or Abraxas) at 4q21. This 4q21 variant was also associated with lung cancer risk in a series of 5,652 lung cancer cases and 9,338 controls (rs1494961, p=3×10−4). These results further highlight the importance of the genes involved in the metabolism of alcohol in UADT cancer susceptibility, and also implicate 4q21 in susceptibility to both UADT and lung cancers. Note: This abstract was not presented at the AACR 101st Annual Meeting 2010 because the presenter was unable to attend. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 101st Annual Meeting of the American Association for Cancer Research; 2010 Apr 17-21; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2010;70(8 Suppl):Abstract nr 3861.
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