Unsubstituted Analogues Research Articles

Structural and electrochemical properties of lutetium bis-octachloro-phthalocyaninate nanostructured films. Application as voltammetric sensors.

Thin films of the bis[2,3,9,10,16,17,23,24-octachlorophthalocyaninate] lutetium(III) complex (LuPc2Cl32) have been prepared by the Langmuir-Blodgett and the Langmuir-Schaefer (LS) techniques. The influence of the chlorine substituents in the structure of the films and in their spectroscopic, electrochemical and sensing properties has been evaluated. The π-A isotherms exhibit a monolayer stability greater than the observed in the unsubstituted analogue (LuPc2), being easily transferred to solid substrates, also in contrast to LuPc2. The LB and LS films present a linear growth forming stratified layers, monitored by UV-VIS absorption spectroscopy. The latter also revealed the presence of LuPc2Cl32 in the form of monomers and aggregates in both films. The FTIR data showed that the LuPc2Cl32 molecules present a non-preferential arrangement in both films. Monolayers of LB and LS were deposited onto 6 nm Ag island films to record surface-enhanced resonance Raman scattering (SERRS), leading to enhancement factors close to 2 x 10(3). Finally, LB and LS films deposited onto ITO glass have been successfully used as voltammetric sensors for the detection of catechol. The improved electroactivity of the LB and LS films has been confirmed by the reduction of the overpotential of the oxidation of catechol. The enhancement of the electrocatalytic effect observed in LB and LS films is the result of the nanostructured arrangement of the surface which increases the number of active sites. The sensors show a limit of detection in the range of 10(-5) mol/L.

5-(Piperidin-4-yl)-3-hydroxypyrazole: A novel scaffold for probing the orthosteric γ-aminobutyric acid type A receptor binding site.

A series of bioisosteric N1- and N2 -substituted 5-(piperidin-4-yl)-3-hydroxypyrazole analogues of the partial GABAA R agonists 4-PIOL and 4-PHP have been designed, synthesized, and characterized pharmacologically. The unsubstituted 3-hydroxypyrazole analogue of 4-PIOL (2 a; IC50 ∼300 μM) is a weak antagonist at the α1 β2 γ2 GABAA R, whereas substituting the N1- or N2- position with alkyl or aryl substituents resulted in antagonists with binding affinities in the high nanomolar to low micromolar range at native rat GABAA Rs. Docking studies using a α1 β2 γ2 GABAA R homology model along with the obtained SAR indicate that the N1 -substituted analogues of 4-PIOL and 4-PHP, 2 a-k, and previously reported 3-substituted 4-PHP analogues share a common binding mode to the orthosteric binding site in the receptor. Interestingly, the core scaffold of the N2 -substituted analogues of 4-PIOL and 4-PHP, 3 b-k, are suggested to flip 180° thereby adapting to the binding pocket and addressing a cavity situated above the core scaffold.

Balancing Adduct Formation and Ligand Coupling with the Bulky Allyl Complexes [1,3-(SiMe3)2C3H3]2M (M = Fe, Co, Ni)

Passage of CO at atmospheric pressure through solutions of A′2M (M = Fe, Co, Ni; A′ = [1,3-(SiMe3)2C3H3]−) in hexanes produces the corresponding allyl complexes A′2Fe(CO)2, A′Co(CO)3, and A′2Ni(CO), respectively. Although the iron and nickel species can be isolated as pure liquids, the cobalt complex is accompanied by the coupling product 1,3,4,6-tetrakis(trimethylsilyl)-1,5-hexadiene. A′Co(CO)3 was independently prepared from the reaction of Co2(CO)8, A′Br, and PhCH2N(C2H5)3+Cl– in aqueous base. The IR stretching frequencies of A′2Fe(CO)2 and A′Co(CO)3 are lower than those in the unsubstituted analogues, indicating that the trimethylsilated allyl ligand is a better electron donor than the parent version. Density functional theory calculations were performed on various conformations of the complexes, which reproduced the frequency-lowering effect of the trimethylsilyl groups. They also indicate that the thermodynamics of the formation of A′2Ni(CO) and the unknown (C3H5)2Ni(CO) are similar, suggesting that...

A Theoretical Investigation into the Luminescent Properties of d8‐Transition‐Metal Complexes with Tetradentate Schiff Base Ligands

A theoretical investigation on the luminescence efficiency of a series of d(8) transition-metal Schiff base complexes was undertaken. The aim was to understand the different photophysics of [M-salen](n) complexes (salen = N,N'-bis(salicylidene)ethylenediamine; M = Pt, Pd (n = 0); Au (n = +1)) in acetonitrile solutions at room temperature: [Pt-salen] is phosphorescent and [Au-salen](+) is fluorescent, but [Pd-salen] is nonemissive. Based on the calculation results, it was proposed that incorporation of electron-withdrawing groups at the 4-position of the Schiff base ligand should widen the (3)MLCT-(3)MC gap (MLCT = metal-to-ligand charge transfer and MC = metal centered, that is, the dd excited state); thus permitting phosphorescence of the corresponding Pd(II) Schiff base complex. Although it is experimentally proven that [Pd-salph-4E] (salph = N,N'-bis(salicylidene)-1,2-phenylenediamine; 4E means an electron-withdrawing substituent at the 4-position of the salicylidene) displays triplet emission, its quantum yield is low at room temperature. The corresponding Pt(II) Schiff base complex, [Pt-salph-4E], is also much less emissive than the unsubstituted analogue, [Pt-salph]. Thus, a detailed theoretical analysis of how the substituent and central metal affected the photophysics of [M-salph-X] (X is a substituent on the salph ligand, M = Pt or Pd) was performed. Temperature effects were also investigated. The simple energy gap law underestimated the nonradiative decay rates and was insufficient to account for the temperature dependence of the nonradiative decay rates of the complexes studied herein. On the other hand, the present analysis demonstrates that inclusions of low-frequency modes and the associated frequency shifts are decisive in providing better quantitative estimates of the nonradiative decay rates and the experimentally observed temperature effects. Moreover, spin-orbit coupling, which is often considered only in the context of radiative decay rate, has a significant role in determining the nonradiative rate as well.

Genotoxicity of Heterocyclic PAHs in the Micronucleus Assay with the Fish Liver Cell Line RTL-W1

Heterocyclic aromatic hydrocarbons are, together with their un-substituted analogues, widely distributed throughout all environmental compartments. While fate and effects of homocyclic PAHs are well-understood, there are still data gaps concerning the ecotoxicology of heterocyclic PAHs: Only few publications are available investigating these substances using in vitro bioassays. Here, we present a study focusing on the identification and quantification of clastogenic and aneugenic effects in the micronucleus assay with the fish liver cell line RTL-W1 that was originally derived from rainbow trout (Oncorhynchus mykiss). Real concentrations of the test items after incubation without cells were determined to assess chemical losses due to, e.g., sorption or volatilization, by means of gas chromatography-mass spectrometry. We were able to show genotoxic effects for six compounds that have not been reported in vertebrate systems before. Out of the tested substances, 2,3-dimethylbenzofuran, benzothiophene, quinoline and 6-methylquinoline did not cause substantial induction of micronuclei in the cell line. Acridine caused the highest absolute induction. Carbazole, acridine and dibenzothiophene were the most potent substances compared with 4-nitroquinoline oxide, a well characterized genotoxicant with high potency used as standard. Dibenzofuran was positive in our investigation and tested negative before in a mammalian system. Chemical losses during incubation ranged from 29.3% (acridine) to 91.7% (benzofuran) and may be a confounding factor in studies without chemical analyses, leading to an underestimation of the real potency. The relative potency of the investigated substances was high compared with their un-substituted PAH analogues, only the latter being typically monitored as priority or indicator pollutants. Hetero-PAHs are widely distributed in the environment and even more mobile, e.g. in ground water, than homocyclic PAHs due to the higher water solubility. We conclude that this substance class poses a high risk to water quality and should be included in international monitoring programs.

Reaching for cyclacenes and short nanotubes through Si substitutions as studied by DFT calculations

Based on density functional theory (DFT) cal- culations, (6)6-10 cyclacenes are made more stable through alternate Si atom substitutions. The ground states of the latter are singlet closed-shell, while those of the former appear singlet open-shell. Concurrently, the strain energies of the Si-substituted species are smaller while their band gaps are larger than for the unsubstituted analogs. Simi- larly, silicon substitutions show stabilizing effects on (6)n carbon nanotubes, albeit to a lesser extent.

Mutagenicity and recombinagenicity of Ocotea acutifolia (Lauraceae) aporphinoid alkaloids

The somatic mutation and recombination test (SMART) in wing cells of Drosophila melanogaster was used to test the mutagenic and recombinogenic activities of five aporphinoid alkaloids isolated from Ocotea acutifolia: thalicminine (1), (+)-dicentrine (2), (+)-ocoteine (3), (+)-6S-ocoteine N-oxide (4), and (+)-leucoxine (5). Third-stage larvae derived from the standard cross with wing cell markers mwh and/or flr3 were treated chronically. The frequencies of mutant spots observed in marked heterozygous descendants revealed significant dose-dependent genotoxicity for alkaloids 1–4; compounds 1 and 2 were the most active. Alkaloids 1–4 also induced mitotic recombination. The presence of a methoxyl group at C-3 (as in compound 3) lowers its genotoxic effect relative to that of unsubstituted analogue 2, and the introduction of an N-oxide functionality (3 vs. 4) further reduces genotoxicity. The very planar conformation of oxo-aporphine alkaloid 1 may account for its higher genotoxicity vs. its less-planar analogues 3 and 4. As previously reported for (+)-dicentrine (2), alkaloids 1, 3, and 4 may also be DNA intercalating agents, interfering with the catalytic activity of topoisomerases.

Synthesis and antimycobacterial activity of analogues of the bioactive natural products sampangine and cleistopholine

Identification and investigation of novel classes and compounds for the treatment of tuberculosis remains of utmost importance in the fight against the disease. Despite many efforts, the weakly gram positive Mycobacterium tuberculosis keeps demanding its toll in human lives. For this reason a small library of substituted and unsubstituted aza analogues of cleistopholine and sampangine were synthesized in a short and straightforward manner and tested in vitro against M.tb. The compounds showed promising activity against the M.tb H37Rv strain and Minimal Inhibitory Concentrations (MIC) could be observed as low as 0.88 μM. Accompanied by moderate acute toxicity against C3A hepatocytes, the therapeutic index showed an acceptable range. Further tests confirmed the inhibition by up to 74% of intracellular growth of M.tb inside macrophages conferred by1-hydroxybenzo[g]isoquinoline-5,10-diones. Activity of the library against other clinically relevant mycobacterial species such as Mycobacterium bovis, Mycobacterium avium and Mycobacterium ulcerans was confirmed. Furthermore the activity against a multi-drug-resistant MDR LAM-1 M.tb strain was tested and the MIC value situated around 1 μM. The lacking genotoxicity of a group of enamine substituted cleistopholine analogues indicates this group as a hit and encourages their use as a scaffold for further studies.

Synthesis and Biological Evaluation of 4-(Aminomethyl)-1-hydroxypyrazole Analogues of Muscimol as γ-Aminobutyric AcidA Receptor Agonists

A series of bioisosteric 4-(aminomethyl)-1-hydroxypyrazole (4-AHP) analogues of muscimol, a GABA(A) receptor agonist, has been synthesized and pharmacologically characterized at native and selected recombinant GABA(A) receptors. The unsubstituted 4-AHP analogue (2a) (EC(50) 19 μM, R(max) 69%) was a moderately potent agonist at human α(1)β(2)γ(2) GABA(A) receptors, and in SAR studies substitutions in the 3- and/or 5-position were found to be detrimental to binding affinities. Ligand-receptor docking in an α(1)β(2)γ(2) GABA(A) receptor homology model along with the obtained SAR indicate that 2a and muscimol share a common binding mode, which deviates from the binding mode of the structurally related antagonist series based on 4-(piperidin-4-yl)-1-hydroxypyrazole (4-PHP, 1). Selectivity for α(1)β(2)γ(2) over ρ(1) GABA(A) receptors was observed for the 5-chloro, 5-bromo, and 5-methyl substituted analogues of 2a illustrating that even small differences in structure can give rise to subtype selectivity.

INVESTIGATIONS OF SYNTHETIC DYES. XLV. STYRYLS FROM N-ARYLQUINALDINE SALTS

Condensation of N-arylquinaldine salts with benzaldehyde and its o- and p-derivatives gives a series of styryl compounds. The absorption maxima of the hydroxystyryls are bathochromically shifted by 12–34 m μ , as compared with the unsubstituted analogs. Transformation of hydroxystyryl salts to the bases is linked with deepening of the color by 90–130 m μ . Authors: G. T. Pilyugin, O. E. Petrenko. English Translation in Chemistry of Heterocyclic Compounds , 1965, 1 (1), pp 99-101 http://link.springer.com/article/10.1007/BF01168935

Gold(II) Phthalocyanine Revisited: Synthesis and Spectroscopic Properties of Gold(III) Phthalocyanine and an Unprecedented Ring‐Contracted Phthalocyanine Analogue

In 1965, gold(II) phthalocyanine (AuPc, 1) was described to be synthesized from unsubstituted 1,3-diiminoisoindoline and gold powder or AuBr. Compound 1 has been regarded as a rare example of a paramagnetic gold(II) complex. However, its chemistry, especially the oxidation state of the central gold ion, has not been previously explored due to the inherent insolubility of 1 caused by its unsubstituted structure. In our attempt to synthesize soluble AuPcs by using 5,6-di-substituted 1,3-diiminoisoindolines, gold(III) phthalocyanine chloride (3) and a gold(III) complex of an unprecedented ring-contracted phthalocyanine analogue ([18]tribenzo-pentaaza-triphyrin(4,1,1), 4) were isolated. With this discrepant result from the original literature in hand, a reinvestigation of the original AuPc synthesis by using unsubstituted 1,3-diiminoisoindoline and various gold salts (including gold powder and AuBr) was performed, finding that only unsubstituted analogues of 3 and 4 or free-base phthalocyanine were obtained. No gold(II)-containing species could be isolated.

Synthesis, spectral properties and photobehaviour of push–pull distyrylbenzene nitro-derivatives

a b s t r a c t Six novel asymmetric 2,5-distyryl-furan, 2,5-distyryl-thiophene and 2,6-distyrylpyridine derivatives, bearing an electron acceptor (p-nitro) group at one side and an electron donor (p-methoxy or p- dimethylamino) group at the other side, have been prepared. The experimental absorption properties have been measured and compared with the computed parameters. Theoretical and experimental results indicate that one conformational isomer (the compressed one) is largely prevalent in all compounds. The measured radiative and reactive relaxation properties of these donor/acceptor disubstituted compounds were also compared with those of the unsubstituted analogues previously investigated. The presence of the donor/acceptor groups leads to a significant increase of the charge transfer character of both the ground and the excited states and to strong red shifts of the absorption spectra, an effect that can be useful for potential applications in material science. The fluorescence/photoisomerization competition of the furan and thiophene derivatives was found to be rather similar to that of the unsubstituted ana- logues whereas significant changes were found for the pyridine derivatives where a drastic decrease of fluorescence, a sizable increase of photoisomerization and a predominance of radiationless deactivation to the ground state becomes operative. © 2012 Elsevier B.V. All rights reserved.

ChemInform Abstract: Synthesis, Structures, and Photochromic Properties of 3‐[(E)‐Alk‐1‐enyl] ‐4‐(1‐alkyl‐5‐methoxy‐2‐methyl‐1H‐indol‐3‐yl)furan‐2,5‐diones.

AbstractNew photochromic hetarylethenes (IV) are synthesized (5 examples) that are characterized by a high content of colored forms in the photostationary state compared to the unsubstituted analogues.

Moderate chemical modifications of WAY-100635 improve the selectivity for 5-HT1A versus D4 receptors

The selectivity for 5-HT1A versus D4 receptors is significantly increased when the basic side chain of WAY-100635 is replaced by a 4-phenylpiperazine (3e) or a 4-phenyl-1,2,3,6-tetrahydropyridine moiety (3i). The 4-phenyl-1,2,3,6-tetrahydropyridine compounds (3i–l) have a higher affinity for 5-HT1A receptors than do the corresponding unsubstituted phenylpiperazine analogues (3e–h). Compounds 3e and 3i appear to be selective for 5-HT1A receptors over other relevant receptors and still behave as neutral antagonists.

Wedge-shaped 1,2-diamidobenzenes forming columnar mesophases via hydrogen bonding

Two series of o-diamidobenzenes, bearing long-chain alkyl substituted gallic ester groups, have been synthesised. The 3,4,5,6-unsubstituted amides 7 with a minimum chain length of C9 exhibited columnar rectangular mesophases of p2mm symmetry with Z = 2. The liquid crystalline phases spread over phase width of extremely wide temperature intervals from -50 to 118°C. However, the phase width slightly decreased with an increase in the length of alkyl substituents. Despite their very similar molecular structure, 1,2-dimethoxy-4,5-diamides 10 revealed a different packing behaviour in their mesophases, due to steric factors. The diamides 10 formed columnar rectangular mesophases with p2mm symmetry, but with Z = 3. In a comparison with unsubstituted analogues 7, compounds 10 displayed even broader mesophases (with temperature intervals up to 220°C).

Molecular Junctions Based on SAMs of Cruciform Oligo(phenylene ethynylene)s

Cruciform oligo(phenylene ethynylene)s (OPEs) with an extended tetrathiafulvalene (TTF) donor moiety (OPE5-TTF and OPE3-TTF) and their simple analogues (OPE5-S and OPE3) without conjugated substituents were used to form high-quality self-assembled monolayers (SAMs) on ultraflat gold substrates. Molecular junctions based on these SAMs were investigated using conducting-probe atomic force microscopy (CP-AFM). The TTF substituent changes the molecular orbital energy levels and decreases the HOMO-LUMO energy gap, resulting in a 9-fold increase in conductance for both TTF cruciform OPEs compared to the unsubstituted analogues. The difference in electrical transport properties of the SAMs was reproduced by the theoretical transport calculations for the single molecules.

(How) does 1,3,5-triethylbenzene scaffolding work? Analyzing the abilities of 1,3,5-triethylbenzene- and 1,3,5-trimethylbenzene-based scaffolds to preorganize the binding elements of supramolecular hosts and to improve binding of targets

1,3,5-triethylbenzenes have been widely used as supramolecular templates to organize molecular-recognition elements. It is believed that the steric-gearing effect of the 1,3,5-triethylbenzene template directs the binding elements toward the same face of the central ring, hence increasing the binding affinity. At the same time the 1,3,5-trimethylbenzene scaffold, without steric-gearing effects, has also been found to improve the binding affinities of hosts compared to the unsubstituted analogues. By studying experimental data from the literature and the Cambridge Structural Database, as well as by conducting computational studies of representative structures, we concluded that the steric gearing offered by the ethyl groups confers some energetic advantage over the methyl groups, but the size of this advantage can be small and is dependent on the groups involved.

T-Butyl Biphenylation of o-Dibromoarenes: A Route to Soluble Polycyclic Aromatic Hydrocarbons

Large, soluble polycyclic aromatic hydrocarbons (PAHs) have been synthesized using Zr-mediated and Stille-type biphenylation reactions. Both the Zr and Stille methodologies have been adopted to incorporate tert-butyl substituents, permitting the direct synthesis of alkylated PAHs that are much more soluble than their unsubstituted analogues. To demonstrate the utility of these methods and the importance of solubilizing functionality, several large PAHs were synthesized and crystallographically characterized. The scope of the Zr-mediated and Stille methodologies is shown to be complementary. The Stille methodology often gives higher yields but is ineffective for the introduction of strain and failed with some polybrominated arenes. In these difficult cases, the zirconium methodology is effective, albeit in low yields.

Sulfur Containing Stable Unsubstituted Heptacene Analogs

Heptacene and higher polyacenes have been sought for their high degree of charge carrier mobility in thin film transistors. Such acenes are, however, extremely unstable in ambient conditions. Approaches to obtain stable heptacenes include introduction of suitable substituents, of heteroatoms, or both. Methods to synthesize stable linear and a nonlinear unsubstituted heptacene analogs are discussed. No changes in the UV-visible absorption spectra in solution over time for these materials indicate higher oxidative stability compared to analogous polyacenes.

Nuclear Magnetic Resonance Solution Structures of Inter- and Intrastrand Adducts of DNA Cross-Linker SJG-136

SJG-136 (1) is a sequence-selective DNA-interactive agent that is about to enter phase II clinical trials for the treatment of malignant disease. Previous studies on the pyrrolo[2,1-c][1,4]benzodiazepine (PBD) dimers, typified by SJG-136 and DSB-120 (2), have shown that these planar ligands react with the exocyclic NH(2) groups of two guanine bases in the base of the minor groove of DNA to form an irreversible interstrand cross-linked sequence-specific adduct. Using high-field NMR, we have characterized and modeled the previously predicted interstrand duplex adduct formed by SJG-136 with the self-complementary 5'-d(CICGATCICG)(2) duplex (4). This first SJG-136 NMR-refined adduct structure has been compared with previous high-field NMR studies of the adducts of the closely related PBD dimer DSB-120 with the same duplex and of the adduct of tomaymycin (3) formed with 5'-d(ATGCAT)(2). Surprisingly, the SJG-136 duplex adduct appears to be more closely related to the tomaymycin adduct than to the DSB-120 adduct with respect of the orientation and depth of insertion of the ligand within the minor groove. The intrastrand duplex adduct formed in the reaction of SJG-136 with the noncomplementary 5'-d(CTCATCAC)·(GTGATGAG) duplex (5) has also been synthesized and modeled. In this duplex adduct, the nature of the cross-link was confirmed, the central guanines were identified as the sites of alkylation, and the stereochemical configuration at C11 at both ends of the SJG-136 molecule was determined to be S. The NMR-refined solution structures produced for the intrastrand adduct confirm the previously proposed structure (which was based solely on mass spectroscopy). Both the inter- and intrastrand SJG-136 duplex adducts form with minimal distortion of the DNA duplex. These observations have an impact on the proposal for the mechanism of action of SJG-136 both in vitro and in vivo, on the repair of its adducts and mechanism of resistance in cells, and, potentially, on the type of pharmacodynamic assay to be used in clinical trials. SGJ-136 is currently in phase II clinical trials with several groups working on both dimeric cross-linking agents and monoalkylating ligands based on the PBD alkylating moiety. This study suggests subtle differences between the DNA binding of SJG-136 and the C2 unsubstituted analogue DSB-120 that are likely to be the origins of the differences in potency. Confirmation of the stereochemical configuration at the C11 position (particularly in the intrastrand adduct) provides confirmation of binding orientation that was previously only speculation in the HPLC MS study. Together, these observations are likely to be of value in the development of third-generation PBD-based cross-linkers and monoalkylating analogues.