With the development of collectivization and farm enterprise in reclamation area, the separation of government and enterprise, society and enterprise, and management and management will be deepened gradually. The relationship between reclamation and universities will also change. The relationship between higher and lower levels of administrative management and fund allocation has become a parallel cooperation relationship. How to build a new type of cooperation relationship has become a new problem for universities and enterprises. Under the background of agricultural reclamation reform, how to adapt to the situation of agricultural reclamation reform, and how to build a new school enterprise cooperation relationship with Beidahuang group are studied. With the promotion of the reform of state-owned enterprises, the gradual deepening of the separation of government and enterprise, the separation of society and enterprise, and the separation of management and management, enterprises focus on the specialized operation of enterprises. After the separation of their universities, the financial support and policy support obtained in teaching, scientific research and school running funds will be greatly reduced. For local universities with limited school running resources, it is necessary to deal with learning well. The relationship between school, government and enterprise is very important to improve the quality of school running.