Abstract: The average annual base flow/recharge was determined for streamflow‐gaging stations throughout Wisconsin by base‐flow separation. A map of the State was prepared that shows the average annual base flow for the period 1970‐99 for watersheds at 118 gaging stations. Trend analysis was performed on 22 of the 118 streamflow‐gaging stations that had long‐term records, unregulated flow, and provided aerial coverage of the State. The analysis found that a statistically significant increasing trend was occurring for watersheds where the primary land use was agriculture. Most gaging stations where the land cover was forest had no significant trend. A method to estimate the average annual base flow at ungaged sites was developed by multiple‐regression analysis using basin characteristics. The equation with the lowest standard error of estimate, 9.5%, has drainage area, soil infiltration and base flow factor as independent variables. To determine the average annual base flow for smaller watersheds, estimates were made at low‐flow partial‐record stations in 3 of the 12 major river basins in Wisconsin. Regression equations were developed for each of the three major river basins using basin characteristics. Drainage area, soil infiltration, basin storage and base‐flow factor were the independent variables in the regression equations with the lowest standard error of estimate. The standard error of estimate ranged from 17% to 52% for the three river basins.