Types Of Animal Tissues Research Articles

Signal enhancement with double-pulse LIBS on biological samples and better discrimination of tissues through machine learning algorithms

Signal enhancement with double-pulse LIBS on biological samples and better discrimination of tissues through machine learning algorithms

Association Study of Pleural Mesothelioma and Oncogenic Simian Virus 40 in the Crocidolite-Contaminated Area of Dayao County, Yunnan Province, Southwest China.

Background: In Dayao County, Chuxiong Yi Autonomous Prefecture, Yunnan Province, Southwest China, 5% of the surface is scattered with blue asbestos, which has a high incidence of pleural mesothelioma (PMe). Simian virus 40 (SV40) is a small circular double-stranded DNA polyomavirus that can cause malignant transformation of normal cells of various human and animal tissue types and promote tumor growth. In this study, we investigate whether oncogenic SV40 is associated with the occurrence of PMe in the crocidolite-contaminated area of Dayao County, Yunnan Province, Southwest China. Methods: Tumor tissues from 51 patients with PMe (40 of whom had a history of asbestos exposure) and pleural tissues from 12 non-PMe patients (including diseases such as pulmonary maculopathy and pulmonary tuberculosis) were collected. Three pairs of low-contamination risk primers (SVINT, SVfor2, and SVTA1) were used to detect the gene fragment of SV40 large T antigen (T-Ag) by polymerase chain reaction (PCR). The presence of SV40 T-Ag in PMe tumor tissues and PMe cell lines was detected by Western blotting and immunohistochemical staining with SV40-related antibodies (PAb 101 and PAb 416). Results: PCR, Western blotting, and immunohistochemical staining results showed that the Met5A cell line was positive for SV40 and contained the SV40 T-Ag gene and protein. In contrast, the various PMe cell lines NCI-H28, NCI-H2052, and NCI-H2452 were negative for SV40. PCR was negative for all three sets of low-contamination risk primers in 12 non-PMe tissues and 51 PMe tissues. SV40 T-Ag was not detected in 12 non-PMe tissues or 51 PMe tissues by immunohistochemical staining. Conclusion: Our data suggest that the occurrence of PMe in the crocidolite-contaminated area of Yunnan Province may not be related to SV40 infection and that crocidolite exposure may be the main cause of PMe. The Clinical Trial Registration number: 2020-YXLL20.

Expression and function of Caenorhabditis elegans UNCP-18, a paralog of the SM protein UNC-18.

Sec1/Munc18 (SM) proteins are important regulators of SNARE complex assembly during exocytosis throughout all major animal tissue types. However, expression of a founding member of the SM family, UNC-18, is mostly restricted to the nervous system of the nematode Caenorhabditis elegans, where it is important for synaptic transmission. Moreover, unc-18 null mutants do not display the lethality phenotype associated with (a) loss of all Drosophila and mouse orthologs of unc-18 and (b) with complete elimination of synaptic transmission in C. elegans. We investigated whether a previously uncharacterized unc-18 paralog, which we named uncp-18, may be able to explain the restricted expression and limited phenotypes of unc-18 null mutants. A reporter allele shows ubiquitous expression of uncp-18. Analysis of uncp-18 null mutants, unc-18 and uncp-18 double null mutants, as well as overexpression of uncp-18 in an unc-18 null mutant background, shows that these 2 genes can functionally compensate for one another and are redundantly required for embryonic viability. Our results indicate that the synaptic transmission defects of unc-18 null mutants cannot necessarily be interpreted as constituting a null phenotype for SM protein function at the synapse.

An evaluation of the use of DirectSPR images for proton planning in the RayStation treatment planning software.

An important source of uncertainty in proton therapy treatment planning is the assignment of stopping-power ratio (SPR) from CT data. A commercial product is now available that creates an SPR map directly from dual-energy CT (DECT). This paper investigates the use of this new product in proton treatment planning and compares the results to the current method of assigning SPR based on a single-energy CT (SECT). Two tissue surrogate phantoms were CT scanned using both techniques. The SPRs derived from single-energy CT and by DirectSPR™ were compared to measured values. SECT-based values agreed with measurements within 4% except for low density lung and high density bone, which differed by 13% and 8%, respectively. DirectSPR™ values were within 2% of measured values for all tissues studied. Both methods were also applied to scanned containers of three types of animal tissue, and the expected range of protons of two different energies was calculated in the treatment planning system and compared to the range measured using a multi-layer ion chamber. The average difference between range measurements and calculations based on SPR maps from dual- and single-energy CT, respectively, was 0.1mm (0.07%) versus 2.2mm (1.5%). Finally, a phantom was created using a layer of various tissue surrogate plugs on top of a 2D ion chamber array. Dose measurements on this array were compared to predictions using both single- and dual-energy CTs and SPR maps. While standard gamma pass rates for predictions based on DECT-derived SPR maps were slightly higher than those based on single-energy CT, the differences were generally modest for this measurement setup. This study showed that SPR maps created by the commercial product from dual-energy CT can successfully be used in RayStation to generate proton dose distributions and that these predictions agree well with measurements.

OpenPR - A computational tool for CT conversion assessment with proton radiography.

One of the main sources of uncertainty in proton therapy is the conversion of the Hounsfield Units of the planning CT to (relative) proton stopping powers. Proton radiography provides range error maps but these can be affected by other sources of errors as well as the CT conversion (e.g., residual misalignment). To better understand and quantify range uncertainty, it is desirable to measure the individual contributions and particularly those associated to the CT conversion. A workflow is proposed to carry out an assessment of the CT conversion solely on the basis of proton radiographs of real tissues measured with a multilayer ionization chamber (MLIC). The workflow consists of a series of four stages: (a) CT and proton radiography acquisitions, (b) CT and proton radiography registration in postprocessing, (c) sample-specific validation of the semi-empirical model both used in the registration and to estimate the water equivalent path length (WEPL), and (d) WEPL error estimation. The workflow was applied to a pig head as part of the validation of the CT calibration of the proton therapy center PARTICLE at UZ Leuven, Belgium. The CT conversion-related uncertainty computed based on the well-established safety margin rule of 1.2mm+2.4% were overestimated by 71% on the pig head. However, the range uncertainty was very much underestimated where cavities were encountered by the protons. Excluding areas with cavities, the overestimation of the uncertainty was 500%. A correlation was found between these localized errors and HUs between -1000 and -950, suggesting that the underestimation was not a consequence of an inaccurate conversion but was probably rather due to the resolution of the CT leading to material mixing at interfaces. To reduce these errors, the CT calibration curve was adapted by increasing the HU interval corresponding to the air up to -950. The application of the workflow as part of the validation of the CT conversion to RSPs showed an overall overestimation of the expected uncertainty. Moreover, the largest WEPL errors were found to be related to the presence of cavities which nevertheless are associated with low WEPL values. This suggests that the use of this workflow on patients or in a generalized study on different types of animal tissues could shed sufficient light on how the contributions to the CT conversion-related uncertainty add up to potentially reduce up to several millimeters the uncertainty estimations taken into account in treatment planning. All the algorithms required to perform the workflow were implemented in the computational tool named openPR which is part of openREGGUI, an open-source image processing platform for adaptive proton therapy.

Using Histological and Chemical Methods for Detection of Unauthorized Tissues Addition in Emulsion Type Meat Product

Total twenty different processed meat plant producing emulsion type sausage were histologically and chemically examined for detection of adulteration with unauthorized tissues. Results revealed that samples were adulterated with different types of animal tissues included; hyaline cartilage, tendon, spongy bone, peripheral nerve trunk, basophilic matrix, lymphatic tissue, fascia, fibrocartilage and vascular tissue. Moreover, these samples were adulterated Also, adulterated with plant tissue included; plant stem, leaves and root. Chemical analysis showed a significant difference in their chemical composition (moisture, fat, protein, ash and calcium) content. Moisture and fat content varied around the permissible limit of E.S.S. while low protein, high ash and calcium content was detected in the examined samples. Therefore, Histological and chemical examinations can be used as reliable methods to detect adultration using unauthorized addition of both animal and plant tissues in processed meat product samples which revealed a high level of falsification.

Recovery of high-value and scarce resources from biological wastewater treatment: Sulfated polysaccharides

Recovering materials with high value and increasing market demand from sewage and/or sludge is becoming more attractive than recovering traditional resources such as nutrients and biogas. Sulfated polysaccharides (SPs) are valuable and scarce raw materials that can only be produced from marine algae and a few types of animal tissues. This study evaluated if SPs are present in activated sludge obtained from saline sewage with a high level of sulfates present. The presence of SPs-containing extracellular polymeric substances (EPS) was confirmed and quantified for both sludge from lab-scale reactors and full-scale plants for the first time. SPs in the sludge of a lab-scale reactor operated under alternating aerobic/anoxic conditions with 500 mg/L sulfate in the influent (which is typical of Hong Kong saline sewage) reached 342.8 ± 0.3% mg/gVSS, and sludge taken from a full-scale saline wastewater treatment plant (WWTP) contained 418.1 ± 0.4% mg/gVSS of SPs. Purity of the extracted SPs was comparable to that of commercial industrial-grade products. Key bioactivities of SPs (i.e. fucoidan, carrageenan and heparin), namely anti-angiogenesis, anticoagulant and antioxidant, were confirmed after extraction and purification. Interestingly, operating conditions had a strong influence on the contents and types of SPs synthesized in sludge as well as its bioactivities. Although the detailed synthetic pathways of SPs in activated sludge remain unclear, the current study has made a first attempt to recover a high-value scarce resource from biological wastewater treatment.

Biomaterials to Mimic and Heal Connective Tissues.

Connective tissue is one of the four major types of animal tissue and plays essential roles throughout the human body. Genetic factors, aging, and trauma all contribute to connective tissue dysfunction and motivate the need for strategies to promote healing and regeneration. The goal here is to link a fundamental understanding of connective tissues and their multiscale properties to better inform the design and translation of novel biomaterials to promote their regeneration. Major clinical problems in adipose tissue, cartilage, dermis, and tendon are discussed that inspire the need to replace native connective tissue with biomaterials. Then, multiscale structure-function relationships in native soft connective tissues that may be used to guide material design are detailed. Several biomaterials strategies to improve healing of these tissues that incorporate biologics and are biologic-free are reviewed. Finally, important guidance documents and standards (ASTM, FDA, and EMA) that are important to consider for translating new biomaterials into clinical practice are highligted.

Accurate Needle Localization Using Two-Dimensional Power Doppler and B-Mode Ultrasound Image Analyses: A Feasibility Study.

Curvilinear ultrasound transducers are commonly used in various needle insertion interventions, but localizing the needle in curvilinear ultrasound images is usually challenging. In this paper, a new method is proposed to localize the needle in curvilinear ultrasound images by exciting the needle using a piezoelectric buzzer and imaging the excited needle using a curvilinear ultrasound transducer to acquire a power Doppler image and a B-mode image. The needle-induced Doppler responses that appear in the power Doppler image are analyzed to estimate the needle axis initially and identify the candidate regions that are expected to include the needle. The candidate needle regions in the B-mode image are analyzed to improve the localization of the needle axis. The needle tip is determined by analyzing the intensity variations of the power Doppler and B-mode images around the needle axis. The proposed method is employed to localize different needles that are inserted in three ex vivo animal tissue types at various insertion angles, and the results demonstrate the capability of the method to achieve automatic, reliable and accurate needle localization. Furthermore, the proposed method outperformed two existing needle localization methods.

Immunohistochemical Analysis of CCN Proteins in Calcified Tissues.

Immunohistochemistry is a major technique to determine the distribution and localization of differentially produced proteins in the context of an intact tissue. It exploits one of the properties of antibodies, specific binding to an antigen, i.e., to the epitope of its target protein, in combination with a color-developing enzymatic reaction or tagged fluorophore. We have clarified the spatial and temporal expression patterns of CCN family proteins in several different types of animal tissues by using this immunohistochemical technique to support our corresponding data obtained in vitro. In this chapter, we provide our protocol for immunohistochemistry optimized for paraffin-embedded sections after having determined the optimal conditions for the use of antibodies against each member of the CCN family.

Quantitative Evaluation of Filter Aided Sample Preparation (FASP) and Multienzyme Digestion FASP Protocols.

Filter aided sample preparation (FASP) and related methods gain increasing popularity for proteomic sample preparation. Nevertheless, the originally published FASP method has been criticized by several authors, who reported low digestion performance. In this work, we re-evaluate FASP and the related multienzyme digestion (MED) FASP method. We use different types of animal tissues and cultured cells and test the performance of the method under various conditions. We analyze the protein to peptide conversion by assessing the yield of peptides, frequency of peptides with missed cleavage sites, and the reproducibility of FASP. We identify conditions allowing efficient protein processing with high peptide yields and demonstrate advantages of the two step digestion strategy over single step digestion with trypsin. In addition, we show that FASP outperforms in-solution cleavage strategies. Our results clearly demonstrate that the performance of digestion varies between different types of samples. We show that MED FASP in combination with the total protein approach provides highly reproducible protein abundance values. The presented data can be used as a guide for optimization of sample processing.

Rates of development of immatures of three species of Chrysomya (Diptera: Calliphoridae) reared in different types of animal tissues: implications for estimating the postmortem interval

Blowflies have major medical and sanitary importance because they can be vectors of viruses, bacteria, and helminths and are also causative agents of myiasis. Also, these flies, especially those belonging to the genus Chrysomya, are among the first insects to arrive at carcasses and are therefore valuable in providing data for the estimation of the minimum postmortem interval (PMImin). The PMImin can be calculated by assessing the weight, length, or development stage of blowfly larvae. Lack of information on the variables that might affect these parameters in different fly species can generate inaccuracies in estimating the PMImin. This study evaluated the effects of different types of bovine tissues (the liver, muscle, tongue, and stomach) and chicken heart on the development rates of larvae of Chrysomya albiceps Wiedemann, Chrysomya megacephala Fabricius, and Chrysomya putoria Wiedemann (Diptera: Calliphoridae). The efficiency of each rearing substrate was assessed by maggot weight gain (mg), larval development time (h), larval and pupal survival (%), and emergence interval (h). The development rates of larvae of all blowfly species studied here were directly influenced by the type of food substrate. Tissues that have high contents of protein and fat (muscle and heart) allowed the highest larval weight gain. For bovine liver, all Chrysomya species showed slower growth, by as much as 48h, compared to the other tissues. Different rates of development are probably associated with specific energy requirements of calliphorids and the nutritional composition of each type of food.

Procedure for tissue sample preparation and metabolite extraction for high-throughput targeted metabolomics

Reproducible quantification of metabolites in tissue samples is of high importance for characterization of animal models and identification of metabolic changes that occur in different tissue types in specific diseases. However, the extraction of metabolites from tissue is often the most labor-intensive and error-prone step in metabolomics studies. Here, we report the development of a standardized high-throughput method for rapid and reproducible extraction of metabolites from multiple tissue samples from different organs of several species. The method involves a bead-based homogenizer in combination with a simple extraction protocol and is compatible with state-of-the-art metabolomics kit technology for quantitative and targeted flow injection tandem mass spectrometry. We analyzed different extraction solvents for both reproducibility as well as suppression effects for a range of different animal tissue types including liver, kidney, muscle, brain, and fat tissue from mouse and bovine. In this study, we show that for most metabolites a simple methanolic extraction is best suited for reliable results. An additional extraction step with phosphate buffer can be used to improve the extraction yields for a few more polar metabolites. We provide a verified tissue extraction setup to be used with different indications. Our results demonstrate that this high-throughput procedure provides a basis for metabolomic assays with a wide spectrum of metabolites. The developed method can be used for tissue extraction setup for different indications like studies of metabolic syndrome, obesity, diabetes or cardiovascular disorders and nutrient transformation in livestock.

Tissue typing using ultrasound RF time series: Experiments with animal tissue samples

This article provides experimental evidence to show that the time series of radiofrequency (RF) ultrasound data can be used for tissue typing. It also explores the tissue typing information in RF time series. Clinical and high-frequency ultrasound are studied. Bovine liver, pig liver, bovine muscle, and chicken breast were used in the experiments as the animal tissue types. In the proposed approach, the authors record RF echo signals backscattered from tissue, while the imaging probe and the tissue are stationary. This sequence of recorded RF data generates a time series of RF echoes for each spatial sample of the RF signal. The authors use spectral and fractal features of ultrasound RF time series averaged over a region of interest, along with feedforward neural networks for tissue typing. The experiments are repeated at ultrasound frequency of 6.6 and also 55 MHz. The effects of increasing power and frame rate are studied. The methodology yielded an average two-class classification accuracy of 95.1% when ultrasound data were acquired at 6.6 MHz and 98.1% when data were collected with a high-frequency probe operating at 55 MHz. In four-class classification experiments, the recorded accuracies were 78.6% and 86.5% for low and high-frequency ultrasound data, respectively. A set of 12 texture features extracted from the B-mode image equivalents of the RF data yields an accuracy of only 77.5% in typing the analyzed tissues. An increase in acoustic power and the frame rate of ultrasound results in an improvement in classification results. The results of this study demonstrate that RF time series can be used for ultrasound-based tissue typing. Further investigation of the underlying physical mechanisms is necessary.

In-Vitro Tests of a Rapid, Stable-Temperature Recharging System for Implantable Batteries

In this paper, the authors report in-vitro tests of an ultrasound system and method of wirelessly transmitting significant amounts of energy into the human body for the purpose of recharging implantable batteries. We demonstrate the complete charging of Li-ion batteries with energy capacities of 35 mA h, 200 mA h, and 600 mA h through several types of animal tissue while keeping the temperature rise of the tissue and piezoelectric receiver below the desired 2°C human safety limit recommended by FDA medical device guidelines. Given these encouraging results, it is logical to conclude that the rapidly growing neurostimulator market is a desirable and appropriate target for introduction of this novel recharging method.

Reciprocal regulation of metabolic and signaling pathways

BackgroundBy studying genome-wide expression patterns in healthy and diseased tissues across a wide range of pathophysiological conditions, DNA microarrays have revealed unique insights into complex diseases. However, the high-dimensionality of microarray data makes interpretation of heterogeneous gene expression studies inherently difficult.ResultsUsing a large-scale analysis of more than 40 microarray studies encompassing ~2400 mammalian tissue samples, we identified a common theme across heterogeneous microarray studies evident by a robust genome-wide inverse regulation of metabolic and cell signaling pathways: We found that upregulation of cell signaling pathways was invariably accompanied by downregulation of cell metabolic transcriptional activity (and vice versa). Several findings suggest that this characteristic gene expression pattern represents a new principle of mammalian transcriptional regulation. First, this coordinated transcriptional pattern occurred in a wide variety of physiological and pathophysiological conditions and was identified across all 20 human and animal tissue types examined. Second, the differences in metabolic gene expression predicted the magnitude of differences for signaling and all other pathways, i.e. tissue samples with similar expression levels of metabolic transcripts did not show any differences in gene expression for all other pathways. Third, this transcriptional pattern predicted a profound effect on the proteome, evident by differences in structure, stability and post-translational modifications of proteins belonging to signaling and metabolic pathways, respectively.ConclusionsOur data suggest that in a wide range of physiological and pathophysiological conditions, gene expression changes exhibit a recurring pattern along a transcriptional axis, characterized by an inverse regulation of major metabolic and cell signaling pathways. Given its widespread occurrence and its predicted effects on protein structure, protein stability and post-translational modifications, we propose a new principle for transcriptional regulation in mammalian biology.

Determination of dimetridazole and metronidazole in poultry and porcine tissues by gas chromatography–electron capture negative ionization mass spectrometry

A sensitive and selective method using gas chromatography–electron capture negative ionization mass spectrometry (GC–ECNI-MS) for analysis of dimetridazole (DMZ) and metronidazole (MNZ) in poultry muscles, porcine kidney and liver, and chicken liver, was developed and validated for the purpose of food surveillance testing of the residues of these two nitroimidazoles in various types of animal tissues in the Hong Kong Special Administrative Region. Before homogenization and extraction with toluene, [2H3]dimetridazole-(DMZ-d3) and secnidazole (SNZ) were added to tissue samples as internal standards. The organic extracts were mixed with n-hexane and subject to solid-phase extraction cleanup by amine extraction columns. MNZ and SNZ were derivatized with BSA prior to GC–ECNI-MS determination. Good recovery and precision were obtained and the limit of detection was below parts per billion levels for poultry and porcine tissues. The method could also be applied for the detection of the hydroxylated metabolite of DMZ.

Restricted Diffusion in Biophysical Systems: Experiment

The pulsed-gradient spin echo nuclear magnetic resonance (PGSENMR) technique was used to measure restricted diffusion of water in three types of animal tissue: human blood plasma and red cells; rat and rabbit heart; rat and rabbit liver. Characteristic lengths (L) for restriction of diffusion are estimated from dependence on the measuring time. Limitations on the range of observable restrictive lengths (1.5-15 mum) are discussed.The decrease in diffusivity due to 1 mum alumina powder (volume fraction = 0.18) in glycerin/water mixtures agrees with the Wang theory assuming spherical particles and no hydration. The characteristic length (L approximately 4 mum) is larger than the particle size (1 mum) or separation (1.8 mum). Comparison of the diffusivities in tissues at short diffusion times with the Wang theory indicates some bound or trapped water.For packed red blood cells, a restriction (L approximately 2.3 mum) was attributed tothe red cell membrane. A permeability p approximately 0.014 cm/s may be estimated from the decrease in diffusivity. Average values of diffusivity ratio in heart were: 0.36 +/- 0.02 for rat; and 0.26 +/- 0.03 for rabbit; and in liver: 0.25 +/- 0.01 for rat; 0.25 +/- .04 for 10-day old rabbit; and 0.195 +/- 0.03 for 2-yr old rabbit. A restriction (L approximately 2.7 mum) in rat liver probably results from the mitochondria.

Lymphocytic choriomeningitis infection of mice as a model for the study of latent virus infection.

Lymphocytic choriomeningitis virus has been used to set up a model of a latent virus infection in mice. It has been shown to be possible to induce reproducible virus infections in mice which remain completely symptom-free in spite of levels of viral growth equal to those found in the sick animal, by the inoculation of mice within a few hours of birth. This is a convenient method of producing a latent infection in the mice. The effect of the age of the mice at the time of intracerebral inoculation was studied with respect to the pattern of disease produced. Several methods were tried without success in order to induce overt disease in the latently infected animals. The virus did not cause any demonstrable cytopathogenic effect on mouse tissue and several other types of animal tissue. A slight cytopathogenic effect was observed in a strain of human cells in vitro. Virus persisted for weeks in some of the tissue cultures, without damaging the tissue but with the production of active virus. The bearing of the results obtained is discussed in relationship to current concepts of latent virus infection and particularly immunological tolerance. A concept of a special variety of latency is introduced and the name "vital" infection suggested for this.

Cholesterol Metabolism in the Animal Body

THERE has been a considerable amount of recent work on the unsaponifiable fatty material of several types of animal tissue, and one of the results of this kind of experiment has been to throw some light on the changes which probably take place during life in the substance cholesterol (I), a ubiquitous constituent of animal cells.