Abstract The disruption of clinical trials during the COVID-19 pandemic has been discussed widely. But no systemically study has quantitatively examined the multi-dimensional effect of COVID-19 on the clinical trials of non-COVID-19 diseases under a well-recognized disease classification system. By acquiring over 380,000 clinical trials from ClinicalTrials.gov and Dimensions, and automatically mapping trials with the WHO Global Health Estimates (GHE) cause category, this study explores the effect of COVID-19 on trials’ activeness, efficiency, and international collaboration. Beyond a global perspective, the granular comparative analysis using the USA, China, Japan, the UK as representative cases are conducted. Utilizing an interrupted time series model, we find that while aggregate number of trial registrations has remained relatively stable, there is a notable crowding-out effect for non-COVID-19 diseases, affecting both non-communicable and communicable diseases. Interestingly, despite heightened focus on COVID- 19 research, trial efficiency for other diseases remained largely unaffected. COVID-19 prompted increased global collaboration in clinical research. Through further categorization of sponsorship type and identification of digitized trials by text-mining analysis, we summarized and validated three potential factors to shed light on the observed effects of COVID-19 on clinical studies. Additionally, the valuable insights and essential lessons in managing unprecedented pandemics are discussed. Peer Review https://www.webofscience.com/api/gateway/wos/peer-review/10.1162/qss_a_00354
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