Our stratigraphic and paleontological investigations revealed three sandy event deposits (E1, E2, and E3) within peaty clay at the Sotomeyachi site on the Japan Sea coast of Honshu (mainland of Japan), northwestern Japan. Visual examination and X-ray computed tomographic images of samples of the deposits provided evidence of strong currents characterized by rip-up mud clasts, load casts, and erosional lower stratigraphic contacts. Marine, brackish, and freshwater diatom species in the deposits indicate they were derived from various coastal sources. Radiocarbon dating constrained the ages of event deposit E2 to 1764–1902 CE and E3 to 1558–1845 CE, 1699–1918 CE, and 1704–1781 CE. According to historical records, the E2 deposits likely correspond to the tsunami generated by the 1833 Shonai-oki earthquake, and the E3 deposits correspond to a tsunami associated with either a submarine landslide associated with the 1741 Oshima-Oshima eruption or the 1793 Nishi-Tsugaru earthquake. Because our numerical simulation of the 1741 tsunami showed no significant inundation at the study site, it is more likely that the 1793 earthquake was responsible for tsunami deposit E3. The E1 deposit is discontinuous and showed different characteristics (absence of load structures, rip-up mud clasts and mixed diatom assemblages) to those of events E2 and E3, so it is unlikely to be a tsunami deposit.