Trophic Functional Groups Research Articles

Marine toxin domoic acid alters protistan community structure and assembly process in sediments

Domoic acid (DA)-producing algal blooms have been the issue of worldwide concerns in recent decades, but there has never been any attempt to investigate the effects of DA on microbial ecology in marine environments. Protists are considered to be key regulators of microbial activity, community structure and evolution, we therefore explore the effect of DA on the ecology of protists via metagenome in this work. The results indicate that trace amounts of DA can act as a stressor to alter alpha and beta diversity of protistan community. Among trophic functional groups, consumers and phototrophs are negative responders of DA, implying DA is potentially capable of functional-level effects in the ocean. Moreover, microecological theory reveals that induction of DA increases the role of deterministic processes in microbial community assembly, thus altering the biotic relationships and successional processes in symbiotic patterns. Finally, we demonstrate that the mechanism by which DA shapes protistan ecological network is by acting on phototrophs, which triggers cascading effects in networks and eventually leading to shifts in ecological succession of protists. Overall, our results present the first perspective regarding the effects of DA on marine microbial ecology, which will supplement timely information on the ecological impacts of DA in the ocean.

Regional differences in water beetle communities networks settling in dystrophic lakes in northern Poland

The relationships between the species that form the networks in small dystrophic lakes remain poorly recognised. To investigate and better understand the functioning of beetle communities in different ecosystems, we created three network models that we subjected to graph network analysis. This approach displays correlation–based networks of connections (edges) between objects (nodes) by evaluating the features of the whole network and the attributes of nodes and edges in the context of their roles, expressed by centrality metrics. We used this method to determine the importance of specific species in the networks and the interspecific relationships. Our analyses are based on faunal material collected from 25 dystrophic lakes in three regions of northern Poland. We found a total of 104 species representing different ecological elements and functional trophic groups. We have shown that the network of relationships between the biomass of species differs considerably in the three study regions. The Kashubian Lakeland had the highest cohesion and density, while the network in the Suwalki Lakeland was the thinnest and most heterogeneous, which might be related to the fractal structure and the degree of development of the studied lakes. Small–bodied predators that congregated in different clusters with species with similar ecological preferences dominated all networks. We found the highest correlations in the Masurian Lakeland, where we obtained the highest centralisation of the network. Small tyrphophiles typically occupied the central places in the network, while the periphery of the network consisted of clusters with different habitat preferences, including large predators. The species that were most important for network cohesion and density were mainly tyrphophilous species, such as Anacaena lutescens, Hygrotus decoratus, Enochrus melanocephalus and Hydroporus neglectus. The values of attributes determining the role of species in community networks were influenced by both biotic and environmental factors.

Seasonal variations of macrozoobenthic community trophic structure in the waters adjacent to the seaweed beds of Dalian Island in the North Yellow Sea.

To investigate the effects of algal detritus export on the trophic structure of macrozoobenthic community in the adjacent benthic habitat during the bloom and decline of macroalgae, we collected macrozoobenthos from the adjacent sea area of Dalian Island in the North Yellow Sea in May (the algal bloom period) and August (the algal decay period) of 2020. We quantifyied the seasonal changes in the trophic structure of macrozoobenthic community by using carbon and nitrogen stable isotope techniques. Results showed that δ13C and δ15N values of macrozoo-benthos in May ranged from -23.14‰ to -14.24‰, 6.21‰ to 12.90‰, respectively, and -22.36‰ to -14.13‰, 5.33‰ to 12.00‰, respectively in August. Results of PERMANOVA analysis showed that δ13C values of macrozoobenthos differed significantly between the two months, while δ15N values were not significantly different. Based on the Euclidean distance, the macrozoobenthic communities in both months could be classified into five trophic functional groups. The trophic levels of macrozoobenthos ranged from 2.00 (Nitidotellina minuta) to 3.97 (Glycera onomichiensis) in May and from 2.00 (N. minuta) to 3.96 (G. onomichiensis) in August. The δ13C range, δ15N range, mean centroid distance, total area and corrected standard ellipse areas which represented community trophic structure indices in August were higher than those in May. Our results indicated that the trophic diversity level and trophic niche width of the macrozoobenthic community in the adjacent sea area of the seaweed bed were higher in the algal decline season.

ECOfast – An integrative ecological evaluation index for an ecosystem-based assessment of shallow rocky reefs

The degradation of marine ecosystems is a growing concern worldwide, emphasizing the need for efficient tools to assess their ecological status. Herein, a novel ecosystem-based ecological evaluation index of shallow rocky reefs is introduced and tested in the Aegean and Ionian Seas (NE Mediterranean). The index focuses on a specific set of pre-selected species, including habitat-forming, key, commercially important, and non-indigenous species, across a wide range of trophic levels (1.00–4.53). Data acquisition is conducted through rapid non-destructive SCUBA diving surveys to assess all macroscopic food web components (macroalgae, invertebrates, and fish). Two versions of the index, ECOfast and ECOfast-NIS, were developed, each applying a different approach to account for the impact of non-indigenous species. In our case study, the correlations between the two versions of the index and sea surface temperature, protection status, occurrence of carnivorous fish, and non-indigenous herbivores were assessed through generalized additive models (GAMs). The assessment assigned 93% (ECOfast) or 96% (ECOfast-NIS) of the sites to a moderate to bad ecological status, indicating an alarming situation in the shallow rocky reefs of the NE Mediterranean. Sites evaluated as poor or bad were characterized by extensive coverage of ephemeral macroalgae, absence or minimal presence of large indigenous carnivorous fish, and complete absence of one to three out of five invertebrate functional trophic groups. The community composition of macroalgae, herbivorous species, and carnivorous fishes differed between the 5 m and 15 m depth zones. Surface temperature and carnivorous fish occurrence were the most important tested predictors of the ecological status of shallow rocky reefs. The best GAMs showed that the ECOfast score declined with sea surface temperature and increased with the occurrence of carnivorous fish; ECOfast-NIS declined with sea surface temperature and the occurrence of non-indigenous fish and increased with the occurrence of carnivorous fish. The non-destructive and integrative nature of this approach, its speed of data acquisition and analysis, and its capacity to account for highly mobile predatory fish and non-indigenous species render the ECOfast index a novel, robust, and valuable tool for assessing the ecological status of shallow rocky reefs.

Community dynamics of microbial eukaryotes in intertidal mudflats in the hypertidal Bay of Fundy

Protists (microbial eukaryotes) are a critically important but understudied group of microorganisms. They are ubiquitous, represent most of the genetic and functional diversity among eukaryotes, and play essential roles in nutrient and energy cycling. Yet, protists remain a black box in marine sedimentary ecosystems like the intertidal mudflats in the Bay of Fundy. The harsh conditions of the intertidal zone and high energy nature of tides in the Bay of Fundy provide an ideal system for gaining insights into the major food web players, diversity patterns and potential structuring influences of protist communities. Our 18S rDNA metabarcoding study quantified seasonal variations and vertical stratification of protist communities in Bay of Fundy mudflat sediments. Three ‘SAR’ lineages were consistently dominant (in terms of abundance, richness, and prevalence), drove overall community dynamics and formed the core microbiome in sediments. They are Cercozoa (specifically thecate, benthic gliding forms), Bacillariophyta (mainly cosmopolitan, typically planktonic diatoms), and Dinophyceae (dominated by a toxigenic, bloom-forming species). Consumers were the dominant trophic functional group and were comprised mostly of eukaryvorous and bacterivorous Cercozoa, and omnivorous Ciliophora, while phototrophs were dominated by Bacillariophyta. The codominance of Apicomplexa (invertebrate parasites) and Syndiniales (protist parasites) in parasite assemblages, coupled with broader diversity patterns, highlighted the combined marine and terrestrial influences on microbial communities inhabiting intertidal sediments. Our findings, the most comprehensive in a hypertidal benthic system, suggest that synergistic interactions of both local and regional processes (notably benthic-pelagic coupling) may drive heterogenous microbial distribution in high-energy coastal systems.

Fish functional trophic groups in headwater karst streams from the Upper Paraguay River basin

Abstract Data obtained by direct observation of organisms in their natural habitats can provide valuable contributions regarding intra- and inter-specific interactions, as well as spatial distribution and trophic relationships. However, relatively few such data are available for the Neotropical ichthyofauna relative to the great species diversity of this region. We present data on the ichthyofauna in karst environments of the Serra da Bodoquena, Upper Paraguay River basin regarding their categorization into functional trophic groups. We used direct observations that focused on the most frequent feeding tactics and their spatial (vertical and horizontal) distribution in the channel. We observed 83 fish species in 17 functional trophic groups. The greatest species richness was concentrated in the Characidae and Loricariidae in the categories Diurnal Backwater Drift Feeders and Grazers, respectively. Regarding horizontal depth stratification, we found a positive relationship between the association of small fish with the shallow marginal habitats. This work represents a contribution to a region known for its high tourist potential and to the important diversity of the entire ichthyofauna of the Upper Paraguay basin region that requires proper conservation strategies for sustaining these species.

Marine Resource Recovery Following the COVID-19 Event in Southern Thailand

This study investigated coral and reef fish recovery following the COVID-19 event between low and high environmental disturbance reefs at Racha Yai Island, Southern Thailand. Three and four 50-m permanent line transects were set at low and high environmental reefs to collect the percent of live coral cover, fish diversity and abundance, and fish trophic-functional groups based on diet and habitat use. Our results showed a significant rise in the percentage of live coral cover, the number of individual fish, the number of fish species, and species richness at both bays following the COVID-19 lockdown due to a crucial reduction in human activities on the reef. In addition, there were increases in the number of corallivore fishes belonging to Chaetodontidae and Pomacentridae families and a reduction of omnivorous fish at the fish-feeding tourist attraction reefs due during the COVID-19 lockdown due to reducing fish-feeding tourism. This indicated that restricted human activities and reduced anthropogenic stress on a coral reef may have substantial short-term impacts on reef fish diversity. Our insights could help designate guidelines to manage tourist impacts on coral reefs and aid in their prolonged persistence. Doi: 10.28991/CEJ-2022-08-11-011 Full Text: PDF

Aquatic macroinvertebrate trophic guilds, functional feeding groups, and water quality of an andean urban river

In the Anthropocene, man has imposed his activities above the natural processes of ecosystems. Rivers have undergone major changes associated with urban centers, so monitoring them is important to determine their status and suitability to provide environmental services. Studies applying the community ecology approach, such as energy flow in aquatic macroinvertebrate assemblages, may be appropriate to determine their status and functioning. This study characterized an Andean river that runs across the city of Ayacucho (Peru). Water physicochemical parameters and biotic quality indices were used and compared with the abundance of trophic guild components and functional feeding groups to demonstrate that the latter are at least equally suitable to estimate water quality. The river section studied ranged from 2640 to 2900 m a.s.l. and was monitored in the wet and dry seasons. Six monitoring stations were established according to the extent of the influence of the urban center. Water physicochemical variables and macroinvertebrate abundances were determined. A Surber net was used for multihabitat sampling; macroinvertebrates were identified to genus level (in most cases) and counted to estimate relative abundances. Trophic guilds (detritivore, predator, herbivore) were formed using the genus data from identification according to the information available in Argentina, Colombia, Ecuador, Bolivia, and Peru. Functional feeding groups were set based on the classification of families. The sensitivity of trophic metrics was assessed by relating them to environmental variables and the Andean Biotic Index (ABI), the Biological Monitoring Working Party adapted for Colombia (BMWP/Col.), and the Ephemeroptera, Plecoptera, Trichoptera (EPT) indices. Environmental variables and biotic indices increased significantly in the most impacted stations, where the abundance of most taxa decreased. The components of trophic guilds and functional groups varied, and those feeding on fine particles increased in sites with a higher urban impact. The metrics based on trophic characteristics were highly correlated with the BMWP/Col and ABI indices. Therefore, these indices can be used to estimate river water quality and provide information on its functioning.

Responses of soil fungal communities and functional guilds to ~160 years of natural revegetation in the Loess Plateau of China.

Natural revegetation has been widely confirmed to be an effective strategy for the restoration of degraded lands, particularly in terms of rehabilitating ecosystem productivity and soil nutrients. Yet the mechanisms of how natural revegetation influences the variabilities and drivers of soil residing fungal communities, and its downstream effects on ecosystem nutrient cycling are not well understood. For this study, we investigated changes in soil fungal communities along with ~160 years of natural revegetation in the Loess Plateau of China, employing Illumina MiSeq DNA sequencing analyses. Our results revealed that the soil fungal abundance was greatly enhanced during the later stages of revegetation. As revegetation progresses, soil fungal richness appeared first to rise and then decline at the climax Quercus liaotungensis forest stage. The fungal Shannon and Simpson diversity indexes were the lowest and highest at the climax forest stage among revegetation stages, respectively. Principal component analysis, Bray–Curtis similarity indices, and FUNGuild function prediction suggested that the composition, trophic modes, and functional groups for soil fungal communities gradually shifted along with natural revegetation. Specifically, the relative abundances of Basidiomycota, Agaricomycetes, Eurotiomycetes, and ectomycorrhizal fungi progressively increased, while that of Ascomycota, Sordariomycetes, Dothideomycetes, Tremellomycetes, saprotrophic, pathotrophic, arbuscular mycorrhizal fungi, and endophyte fungi gradually decreased along with natural revegetation, respectively. The most enriched members of Basidiomycota (e.g., Agaricomycetes, Agaricales, Cortinariaceae, Cortinarius, Sebacinales, Sebacinaceae, Tricholomataceae, Tricholoma, Russulales, and Russulaceae) were found at the climax forest stage. As important carbon (C) sources, the most enriched symbiotic fungi (particularly ectomycorrhizal fungi containing more recalcitrant compounds) can promote organic C and nitrogen (N) accumulation in soils of climax forest. However, the most abundant of saprotrophic fungi in the early stages of revegetation decreased soil organic C and N accumulation by expediting the decomposition of soil organic matter. Our results suggest that natural revegetation can effectively restore soil fungal abundance, and modify soil fungal diversity, community composition, trophic modes, and functional groups by altering plant properties (e.g., plant species richness, diversity, evenness, litter quantity and quality), quantity and quality of soil nutrient substrates, soil moisture and pH. These changes in soil fungal communities, particularly their trophic modes and functional groups along with natural revegetation, impact the accumulation and decomposition of soil C and N and potentially affect ecosystem C and N cycling in the Loess Plateau of China.

Effect of biological and environmental factors on microplastic ingestion of commercial fish species.

Marine litter is an emerging pollution all over the world. In addition to the macro sized plastics, ongoing scientific efforts revealed risks of micro and nano sized plastic particles in marine environment. In the past decades, an increasing number of studies have been carried out to understand the dynamics of this pollution. The aim of the present study was to investigate the microplastic (MPs) ingestion in commercially important fish species and to evaluate biological and environmental factors influencing the ingestion status. Gastrointestinal tract content of a total of 2222 individuals belonging to 17 species were examined for MPs existence. Out of 17 species evaluated, 13 of them was detected to ingest MPs. Our results showed that 18.1% of investigated fishes ingested MPs and the average length of the detected particles was 1.26±1.38 (±SD) mm. The most dominant MP type was fiber (90.1%), while the most common particle colours were black (46.9%) and blue (29.4%). Polypropylene (85%) was the most common polymer type detected. Our evaluations indicated that the exposure of fish distributed in coastal areas to microplastic pollution is corelated to physical (precipitation and distance to nearest shore) and biological (functional trophic group, habitat of the species) factors. In order to design a more effective control mechanism, these impacts should be included in the assessments in future practices to reveal the effects of microplastic pollution on biota.

An approach to discriminating water quality status based on trophic-functional diversity of periphytic protozoan communities in marine ecosystems

To determine the sensitivity of trophic-functional diversity of periphytic protozoa to environmental change, a 1-year baseline survey was carried out using glass microscope slides as artificial substrates at four sampling sites along a pollution gradient in coastal waters of the Yellow Sea, northern China. Eight trophic-functional groups were identified from 144 observed species based on feeding type and food resource. Results showed that: (1) bacterivores increased, while algivores and non-selectives decreased in abundance with increasing levels of pollution; (2) the trophic-functional pattern of the biofilm-dwelling protozoan communities showed a significant variation among the four sites; and (3) the ellipse test based on paired trophic-functional distinctness indices (Δ φ+ and Λφ+) indicated a significant departure from an expected trophic-functional pattern in polluted areas. Based on these findings, it is suggested that trophic-functional distinctness of periphytic protozoa may be a feasible bioindicator of marine water quality.

Insects diversity in an agroecosystem of Bhabar region of Uttrakhand

Species diversity and abundance of insects associated in an agricultural ecosystem was studied in Bhabar region of district Nainital in Uttarakhand from March 2018 to February 2020. Data revealed a total of 148 insect species belonging to 47 families and nine orders (Lepidoptera, Coleoptera, Hemiptera, Orthoptera, Hymenoptera, Odonata, Diptera, Dictyoptera, and Phasmida), identified from 2007 specimens. These were classified into five functional trophic groups: phytophagous, predators, omnivores, saprophages and decomposers. The diversity indexes showed significance- Diversity (Hʹ=1.778), Evenness (E=0.9689), and Margalef’s Index (d=1.924). Diversity indices of insect orders showed Lepidoptera to be the most diverse (Hʹ=1.994) with maximum species richness having high Margalef’s index (d=2.607), and dipterans with highest evenness (E=0.9572). A total of 1331 individuals of insect pollinators/ visitors were observed, belonging to 99 species of 5 orders (Lepidoptera, Hymenoptera, Coleoptera, Hemiptera, and Diptera).

Macrobenthic Assemblages, Distribution and Functional Guilds from a Freshwater-Dominated Tropical Estuary

Assessment of benthic diversity and estuarine ecological quality is becoming increasingly important. Estuaries are not only highly productive and variable environments, but they are also areas of high anthropogenic perturbations. In this study, benthic macrofauna were sorted, identified and analyzed from a freshwater-dominated tropical estuary along the Bay of Bengal to assess their community structure, distribution and functional guilds, and to uncover the environmental drivers influencing their distributional patterns. Results revealed that the studied physio-chemical variables (DO, pH, alkalinity and temperature) were significantly varied (p < 0.05) among the sites. Capitella sp. was dominant (18%) of the forty morphospecies recorded, indicating organic richness of the area. The ANOVA results revealed that macrobenthic density differed significantly (p < 0.01) between the study locations, and diversity indices (Shannon diversity index, H′) also differed significantly (F4,12 = 5.89; p = 0.02). The benthic density decreased from the head to the mouth, which could be related to salinity fluctuations and large freshwater discharges. Upstream sites were completely segregated from downstream and mid-estuarine sites, according to cluster analysis (CA). The SIMPER results clarified the site grouping pattern, showing that Mysis-1 spp., Capitella spp. and Nephtys-1 were the most significant contributors. From the communities, five functional trophic groups were identified where deposit feeders were the most dominant (66.44%). Most of the macrobenthos had strong positive correlations with DO (r = 0.92) and water temperature (r = 0.86) and a negative correlation with soil pH (r = −0.28), per correlation and CCA analyses. Individually, soil pH (r = 0.88) and alkalinity (r = 0.898) showed strong positive correlation with Capitella sp. and Chironomus sp.2. The above results indicate that macrobenthos of this estuary do not follow the usual pattern of spatial distribution, and they are structured by DO, alkalinity and soil pH. In addition, dominance of some pollution indicator species (Capitella sp. and Chironomus sp.) and deposit feeders indicates a poor ecological condition of the estuary.

Prescribed burning in spring or autumn did not affect the soil fungal community in Mediterranean Pinus nigra natural forests

In the context of global change, wildfires are not only a threat but are also increasing in their severity in forest ecosystems worldwide, affecting and modifying vegetation, wildlife, and fungal dynamics. Mediterranean ecosystems are frequently affected by fire and prescribed burning is being increasingly used as a tool to reduce the risk and severity of wildfires. Although some of the effects of prescribed burning have been studied, the best moment to perform a prescribed burn to reduce the impact of fire on fungal communities has not been fully investigated. In this study, we analysed the effect of prescribed burning in two different seasons (spring and autumn) on soil fungi associated with naturalPinusnigraforests. Four years after prescribed burning was applied, our analyses showed that the total fungal richness and the composition of fungal communities in spring-burned, autumn-burned, and unburned control plots did not differ significantly. However, analyses of specific phyla and functional trophic groups did reveal some significant differences between spring- or autumn-burned plots and unburned control plots. Valuable edible fungi, which were not affected by the prescribed burning, were also found in the study area. Thus, our results suggest that prescribed burning is not only an interesting tool that could be used to reduce the risk of wildfire but also is compatible with the conservation of fungal communities, and could even promote specific valuable edible species, generating complementary incomes for the rural population. Although further studies are needed, our analyses suggest that the season (spring or autumn) in which prescribed burning is performed does not affect fungal conservation and, therefore, does not need to be one of the factors taken into consideration when selecting the most appropriate time to perform a prescribed burning.

Protistan consumers and phototrophs are more sensitive than bacteria and fungi to pyrene exposure in soil

The levels of organic pollutants, in particular polycyclic aromatic hydrocarbons (PAHs), are increasing worldwide, yet we lack clarity on how these pollutants affect microbial communities of different trophic levels, including protists, fungi, and bacteria. Herein, we conducted soil microcosm incubation experiments to investigate the effects of pyrene, a typical PAH, on microbial communities along concentration gradients from 0 to 500 mg kg−1 soil. Protistan communities were more sensitive to pollutants than fungal and bacterial communities, and protistan consumers and phototrophs were the dominant trophic functional groups. In addition, by assessing changes in the diversity and structure of the soil microbiome and ecological networks, we found that the microbial communities, including the protistan community and the two trophic communities composed of protists and their prey, were destabilized with increasing stress and pyrene concentrations. We identified links and complicated relationships between phototrophs, bacteria, and consumers in food webs, which explain the importance of protists in stabilizing the microbial community. Collectively, our work provides novel evidence that protists are considerably sensitive to pollution stress, and caution should be exercised in future evaluations of the protistan and multitrophic communities in polluted soil ecosystems.

Fish functional responses to local habitat variation in streams within multiple land uses areas in the Amazon

Abstract In this study, we assessed the effects of multiple land uses and local habitat variables on the composition of fish functional trophic groups (FTG’s) and on the ecomorphological traits of fish in Amazonian streams. We evaluated land use types and local habitat variables in 26 streams distributed within a land use gradient. Land use and habitat variables affected the composition of FTG’s, as evidenced by the increased abundance of diurnal channel drift feeders in areas with high dissolved oxygen and deeper thalweg. At the same time, diurnal surface pickers, as well as diggers, and ambush and stalker predators were more abundant in streams with higher canopy density. Only habitat variables affected the ecomorphological characteristics of the species. Fish with higher values of relative caudal peduncle length were positively associated with high canopy density, while fish with greater relative mouth width were negatively associated with the variables impact in the riparian zone and cover of fish shelter. The stream fish functional structure was mainly affected by the impacts caused to the local habitat resulting from different land uses. Thus, preserving forest remnants, as well as recovering degraded areas, is essential for the maintenance of aquatic biodiversity in the region.

Different kelp species support unique macroinvertebrate assemblages, suggesting the potential community‐wide impacts of kelp harvesting along the Humboldt Current System

Abstract Kelp forests provide habitat for myriad species yet remain poorly studied in some ecoregions, including where there is increasing interest in commercial kelp harvesting for the lucrative alginate industry. To identify indicators for monitoring the impacts of kelp harvesting, the structure and composition of macrobenthic invertebrate assemblages associated with large brown macroalgae, Eisenia cokeri, Lessonia trabeculata and Macrocystis pyrifera, from the Humboldt Current System of Peru were determined. Within kelp habitats two distinct habitats were sampled: (a) adult kelp holdfasts; and (b) the benthos adjacent to the kelp sporophyte (hereafter under‐canopy rock). For each sample, organisms were identified, enumerated and weighed. Totals of 108, 102 and 113 different species were found associated with Eisenia cokeri, M. pyrifera and L. trabeculata, respectively comprising distinct assemblages associated with each kelp forest. Both habitat types (holdfasts and under‐canopy rock) supported diverse, but different, macroinvertebrate assemblages, with richness, abundance and functional trophic groups in general higher in holdfasts compared with on under‐canopy rock. Lastly, macroinvertebrate abundance, biomass, and species richness significantly increased with holdfast size. Results confirm that each kelp species is unique in terms of associated assemblage composition and indicate that kelp harvesting for the alginate industry may have large impacts. We suggest that these effects on associated biodiversity should be incorporated within kelp harvesting management plans. We suggest that holdfast diameter is a good ecological indicator as reductions in holdfast size across the population will indicate a decline in the diversity of macroinvertebrates that are important food sources for higher order organisms. We therefore suggest that monitoring studies include morphological measurements as well as measurement of kelp density.

Marine biodiversity of a pristine coral reef in French Polynesia

Understanding the natural state of coral reefs is paramount to evaluate the response of these ecosystems to local and global human impacts as well as management and conservation strategies. In French Polynesia, some islands are still pristine or uninhabited, such as Tupai atoll. Tupai has been uninhabited, with access to the lagoon prohibited since 2010. However, fishers from nearby islands often take from the outer reef slope at Tupai. Our marine biodiversity survey (coral, macro-invertebrates, and fish) conducted in 2019 highlighted a low density of commercial fish species and top-predators on the outer slope in comparison to the lagoon, where the top-predators represented 16% (of the density) of functional trophic groups. Our surveys also showed a high living coral cover (46%) on the outer slope of Tupai, perhaps due to the absence of both touristic sub-aquatic activities and local pollution from private and commercial activities. Overall, this initial scientific assessment of Tupai has granted an understanding of the spatial patterns of coral, macro-invertebrates, and fish assemblages in the absence of human impacts (i.e., in the lagoon), representing an ecological baseline that could inform conservation management strategies to ensure the preservation of coral reef ecosystem.

Similarities and Differences among Soil Fungal Assemblages in Managed Forests and Formerly Managed Forest Reserves

Unlike the numerous works concerning the effect of management on the forest mycobiome, only a few studies have addressed how fungi from different trophic groups recover from natural and anthropogenic disturbances and develop structural features typical of unmanaged old-growth forests. Our objective is to compare the soil fungal assemblages represented by different functional/trophic groups in protected and managed stands located in European mixed forests dominated by Scots pine. Fungal communities were analyzed using high-throughput Illumina MiSeq sequencing of fungal internal transcribed spacer 1 (ITS1) amplicons. Formerly managed forest reserves (established around 50 years ago) and forests under standard forest management appeared to be similar in terms of total and mean species richness of all fungal operational taxonomic units (OTUs), as well as OTUs assigned to different functional trophic groups. Among the 599 recorded OTUs, 497 (83%) were shared between both management types, whereas 9.5% of taxa were unique to forest reserves and 7.5% were unique to managed stands. Ascomycota and Basidiomycota were the predominant phyla, comprising 88% of all identified fungi. The main functional components of soil fungal assemblages consisted of saprotrophic (42% fungal OTUs; 27% reads) and ectomycorrhizal fungi (16%; 47%). Two-way analysis of similarities (ANOSIM) revealed that both site and management strategy influenced the species composition of soil fungal communities, with site being a primary effect for saprotrophic and ectomycorrhizal fungi. Volume of coarse and very fine woody debris and soil pH significantly influenced the ectomycorrhizal fungal community, whereas saprotrophic fungi were influenced primarily by volume of coarse woody debris and soil nitrate concentration. Among the identified fungal OTUs, 18 red-listed fungal species were identified from both forest reserves and managed forests, comprising two ECM fungi and four saprotrophs from the category of endangered species. Our results suggest that the transformation of fungal diversity after cessation of forest management is rather slow, and that both forest reserves and managed forests help uphold fungal diversity.

The Impact of Nitrogen Pollution in the Agricultural Landscape on Lichens: A Review of Their Responses at the Community, Species, Biont and Physiological Levels

Lichenized fungi are widely used as bioindicators owing to their sensitivity to various anthropogenic impacts. Increased nitrogen deposition affects the occurrence, abundance and distribution of lichens. The main sources of nitrogen in the agricultural landscape are ammonia (NH3) and the ammonium cation (NH4+). Livestock farming and the use of organic and mineral fertilizers are primarily responsible for the emissions of these compounds. N in excess can negatively impact lichen biota and lead, for example, to species decline, impoverishment of lichen communities or unbalanced symbiosis. However, there is also evidence for certain opposite effects, in particular at medium N concentrations. Positive influences may be manifested, for example, by higher chlorophyll a concentrations, or by a greater lichen diversity being supported by the coexistence of lichens with different trophic requirements. Indicator values of lichens in relation to N input are exhibited, for example, by some biont markers (the contents of ergosterol and chlorophyll a), particular species, such as Xanthoriaparietina, or trophic functional groups (oligotrophilous and nitrophilous lichens). Gaps identified in the current knowledge are discussed.