Publisher Summary This chapter describes the technique that combines electrophoresis on polyacrylamide gel with autoradiography to analyze small amounts of tritium-labeled RNA. The sensitivity of the technique is increased by working with thin gel slabs dried to a much reduced thickness so as to minimize self absorption of tritium emissions. The use of tritium as a labeling isotope is convenient when dealing with small amounts of material or with low efficiency of incorporation, because of the high specific activity of the 3 H-labeled compounds commercially available. Electrophoresis of RNA is done essentially as described by Loening (1967). Acrylamide and bisacrylamide are used at 2.2 and 0.1% final concentration, respectively. Gel and electrophoresis buffer is 0.02 M sodium acetate, 2 m M sodium EDTA, and 0.04 M tris (pH 7.8); 33 μ l of N, N, N′, N′-tetramethylethylenediamine and 0.33 ml of 10% ammonium persulfate per gram of acrylamide are added. The solution is rapidly mixed and poured into a polymerization chamber, avoiding air bubbles. Polymerization occurs in about 15–20 minutes. The polymerization chamber consists of two microscope glass slides having very regular surfaces. Good separation of RNA fractions is obtained in 30 minutes with a current of 10 m A and a voltage of 100 V, running 10 gels at a time.
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