Tree Assemblages Research Articles

Directional changes over time in the species composition of tropical vascular epiphyte assemblages

Abstract Understanding the degree to which deterministic and stochastic processes drive community assembly is an ongoing focus of research in community ecology. This effort is strongly biased towards ground‐rooted plants, resulting in a limited understanding of communities of other life‐forms, such as structurally dependent plants. Vascular epiphytes are sessile organisms growing non‐parasitically on three‐dimensional dynamic patches, their host plants. Since negative biotic interactions are thought to play a minor role in vascular epiphyte assembly, in some forests, epiphytes are fascinating model organisms to understand the prevalence of environmental filtering in shaping community assembly. We assessed the contribution of deterministic processes on the temporal dynamics of vascular epiphyte assemblages by tracking the direction of changes in composition, species richness and abundance in time at different ecological and spatial scales. We made use of a globally unique dataset from a lowland forest in Panama. We predict that if niche‐based mechanisms dominate, (a) temporal changes will be directional and (b) differences in the species composition of epiphyte assemblages will be primarily related to host plant characteristics and, to a lesser degree, to the distance between host trees. We show that temporal changes in vascular epiphyte assemblages were directional at different ecological scales, such as the forest patch, host species or individual tree assemblages. Epiphyte assemblages on host trees became more similar in their composition over time than expected by chance, and these changes were not due to homogenisation. While host characteristics were related to these directional changes, host structure rather than host identity was more strongly related to variation in assemblage dissimilarity, while spatial distance among trees was of minor importance. The observed directionality was primarily due to environmental filtering. This study provides the first evidence that niche‐based mechanisms dominate the dynamics of vascular epiphyte assemblages. Analysing temporal patterns of vascular epiphyte assemblages is a first important step towards understanding the relative importance of deterministic processes for diversity maintenance of one of the most diverse plant groups in the tropics. Synthesis. Directionality in the temporal changes of epiphyte assemblages suggests that niche‐based mechanisms dominate these temporal changes. Host size over host identity is the most important environmental filter for epiphyte assemblages establishment.

The spatial variation of air purification benefit provided by street tree assemblages in Shenyang, China

The spatial variation of air purification benefit provided by street tree assemblages in Shenyang, China

Environmental filters and biotic interactions drive species richness and composition in ecotone forests of the northern Brazilian Amazonia

The structure of tree communities in tropical forests depends on environmental filters and biotic interactions such as competition and facilitation. Many ecotone forests in Northern Amazonia are intriguingly populated by tree assemblages characterized by distinct abundances of a single species, Peltogyne gracilipes (Leguminosae). It is unclear whether this pattern solely reflects environmental filters or also antagonistic interactions among species with similar habitat requirements. The aim of this study was to determine the response of species richness and composition to environmental filters, and analyze the role of P. gracilipes in structuring tree communities in ecotone forest areas of the Northern Brazilian Amazonia. We sampled 129 permanent plots along a hydro-edaphic gradient. All arboreal individuals with stem diameter ≥10 cm were measured and identified. Multiple regressions were performed to test the effects of environmental filters, and abundance of P. gracilipes on the tree species richness and composition. Species richness and composition responded to the same filters which, in turn, affected species composition directly and indirectly, through the abundance of P. gracilipes. Our results indicate that both abiotic filters and biotic interactions shape the studied tree communities. P. gracilipes can be considered an indicator species of hydro-edaphic conditions, but also is itself a driver of tree community structure.

Effect of tide level on submerged mangrove recognition index using multi-temporal remotely-sensed data

Mangrove forests are intertidal wetland with a diverse assemblage of trees, shrubs and palms growing along tropical and subtropical coastlines. Effective mapping of mangrove forests has not yet been achieved due to the periodicity of tidal dynamics. Our previous studies showed that a submerged mangrove recognition index (SMRI), which was proposed based on the differential spectral signature of mangrove forests from high and low tides, has potential advantages in mangrove discrimination and classification. However, the effect of tide level on the performance of SMRI is still unclear. In this study, GaoFen-1 images with various tide heights were acquired, and SMRI images from low tide to high tide were obtained. Then, the resulting SMRI images were compared in detail, and the relationship between tide level and SMRI values was analyzed. This experiment was accomplished via a case study in Yunlin, Guangxi Province in China. The results showed that an increased difference in tide level led to an increase in the number of pixels of high SMRI values, indicating that more undetected submerged mangrove forests could be distinguished using SMRI. Furthermore, an exponential relationship was observed between SMRI and tide level. It suggests that SMRI effectively helps to distinguish submerged mangrove forests from multi-tide remotely-sensed imagery, and also benefits accurate mapping of mangrove forests.

Ecological consequences of herbivory by Japanese macaques (Macaca fuscata) on succession patterns of tree assemblages: A case of snowy regions in Japan.

Apart from frugivory, we have limited knowledge of the ecological consequences of primate herbivory. We aimed to ascertain the effects of spring folivory and winter bark/bud herbivory by Japanese macaques (Macaca fuscata) on tree species and succession patterns of cool-temperate forests with heavy snow. To evaluate the impact of herbivory on individual trees, we assessed the growth and mortality of trees consumed by simulating herbivory on nine tree species over 4 years. Additionally, we assessed the cumulative impacts of bark/bud herbivory observed at the tree community level by monitoring the patterns of natural herbivory for almost a decade and evaluating the structure of tree assemblages in places with different cumulative impacts of herbivory. The results of simulated herbivory showed that the mortality caused by both spring and winter herbivory was limited (<20%) for almost all tree species monitored; however, the simulated folivory led to delayed tree growth and/or weakening of tree architecture. In contrast, the simulated bark/bud herbivory sometimes resulted in overcompensation of the tree consumed. The multiyear monitoring of natural herbivory demonstrated that, while bark/bud herbivory did not reduced the diversity and biomass of tree assemblages, the cumulative impacts of natural herbivory could have affected the tree succession pattern, resulting in increasing the availability of bark/buds preferably fed by macaques. The key cause for this feedback effect of herbivory on available foods of macaques might be heavy snow conditions, which could physically and physiologically restrain the excessive bark/buds herbivory by macaques.

Intensification of açaí palm management largely impoverishes tree assemblages in the Amazon estuarine forest

The exploitation of non-timber forest products has been encouraged in order to reconcile economic uses, biodiversity conservation and the provision of ecosystem services. In this paper we investigate how increments on the açaí palm density (Euterpe oleracea) via forest management change tree assemblages across 47 plots in the Amazon estuarine forest (Brazil). Assemblage attributes were confronted to açai clump density, soil fertility, canopy openness and elevation. Both tree species density and richness were negatively affected by acai, but species richness was also affected by tree abundance. Species-accumulation curves also indicated higher alpha and beta diversity across low-intensity forest patches with high-intensity patches lacking half of the tree species. A small set of species dominated forest patches, but açaí density did not correlate with the abundance of valuable species. Explanatory variables, including açai density, explained a small fraction of the variation on the functional profile of tree assemblages, but functional richness was reduced by a half across forest stands exceeding 600 açaí clumps per ha. Our results suggest that açaí intensification alters the structure of woody plant assemblages in estuarine forest. Tree abundance and species richness consistently declines as açaí clump density increases, with some forest stands being dominated by açaí and almost lacking any tree species. Accordingly, landscapes dominated by high-intensity forest stands are largely impoverished in terms of understory, canopy and emergent tree species. These findings question the current legal regulations and thresholds adopted for açai management, while alert for potential disasters caused by poorly-regulated extractions of NTFPs.

Phylogenetic homogenization of Amazonian tree assemblages in forest islands after 26 years of isolation

AbstractQuestionLosses in species richness and functional diversity of tree assemblages have often been observed in Neotropical fragmented landscapes, but the way in which tree phylogenetic diversity responds to forest insularization over decadal timescales remains unclear. Here, we examine how tree phylogenetic diversity and structure have responded to profound landscape alteration and subsequent non‐random species losses within forest islands created within a vast hydroelectric reservoir.LocationBalbina Hydroelectric Dam Reservoir, Central Brazilian Amazonia.MethodsWe used a large tree data set including 435 subplots of 0.05 ha each in 34 forest islands of variable sizes and three continuous forest sites in the Balbina Hydroelectric Dam, which contained 11,000 stems representing 365 species and 188 genera. In each subplot we quantified tree phylogenetic diversity and structure and investigated their relationship with landscape structure metrics and the proportion of species within specific functional groups.ResultsWe uncovered a reduction in phylogenetic diversity in small (&lt;10 ha) isolated islands, particularly in more fire‐prone areas near forest edges and surrounded by low amounts of forest cover. Additionally, assemblage‐wide phylogenetic decay was a result of non‐random species losses, given that tree assemblages dominated by small‐seeded, soft‐wooded pioneer species exhibited lower values of phylogenetic diversity and structure. We also uncovered a phylogenetic signal in traits associated with disturbance‐adapted species within this major man‐made forest archipelago.ConclusionWe uncovered pronounced phylogenetic diversity decay that was mostly driven by the proliferation of disturbance‐adapted species, such as small‐seeded pioneer species exhibiting fast life histories. Our results undermine more optimistic views based on studies in fragmented landscapes dominated by terrestrial matrix habitats, and indicate that true land‐bridge forest islands experience more detrimental effects on different components of tree diversity. Our study contributes to elucidate a growing underestimation of the pervasive threats posed by mega‐dams to tropical forest biodiversity and ecosystem functioning.

Co-benefits of protecting mangroves for biodiversity conservation and carbon storage

The conservation of ecosystems and their biodiversity has numerous co-benefits, both for local societies and for humankind worldwide. While the co-benefit of climate change mitigation through so called blue carbon storage in coastal ecosystems has raised increasing interest in mangroves, the relevance of multifaceted biodiversity as a driver of carbon storage remains unclear. Sediment salinity, taxonomic diversity, functional diversity and functional distinctiveness together explain 69%, 69%, 27% and 61% of the variation in above- and belowground plant biomass carbon, sediment organic carbon and total ecosystem carbon storage, respectively, in the Sundarbans Reserved Forest. Functional distinctiveness had the strongest explanatory power for carbon storage, indicating that blue carbon in mangroves is driven by the functional composition of diverse tree assemblages. Protecting and restoring mangrove biodiversity with site-specific dominant species and other species of contrasting functional traits would have the co-benefit of maximizing their capacity for climate change mitigation through increased carbon storage.

Patterns and drivers of natural regeneration on old-fields in semi-arid floodplain ecosystems

Socio-economic and environmental drivers are causing large scale abandonment of agricultural land worldwide. Simultaneously, there is growing recognition that urgent and widespread revegetation is required in our agricultural landscapes to restore biodiversity, ecosystem services and promote carbon sequestration. The design of effective revegetation strategies, however, can be limited by a lack of knowledge regarding patterns and processes of regeneration. Here, we examine naturally regenerating woody vegetation on 12 old-fields and compare this to paired remnant vegetation across four regions of a semi-arid agricultural area in eastern Australia. We found that naturally regenerating vegetation on old-fields exhibited similarities to remnant vegetation in terms of composition but varied substantially with respect to key structural attributes. Woody vegetation tends to regenerate in these old-fields with relatively high density given sufficient time (~ 30–40 years), but prior to this, very limited structural recovery occurs at all. The composition and richness of tree seedling and shrub assemblages did not differ between remnant and old-field areas. However, tree assemblages in remnant areas differed in composition and had higher species richness. Old-fields had extremely low numbers of exotic trees and shrubs. Simultaneously, most dominant native species present in the remnant vegetation were also observed in regenerating old-fields, contributing to a low degree of compositional difference between old-fields and remnant areas overall. The abundance of paddock trees, time since abandonment and mean annual rainfall are key drivers influencing natural regeneration of these old-fields. We recommend that natural regeneration is a viable form of restoration of old-fields in the northern Murray-Darling Basin given sufficient time.

The potential role of an alien tree species in supporting forest restoration: Lessons from Shiretoko National Park, Japan

Restoring forests has recently received considerable attention in the context of sequestering carbon and supporting biodiversity. Although considering alien species as a tool for natural forest restoration still remains controversial, harnessing alien species when they are already present in an ecosystem might result in overall benefits for nature and society. In this study we evaluated whether the presence of an alien tree species supports or hinders the establishment of naturally regenerating forests in Shiretoko National Park, Japan. In particular, we focused on Larix kaempferi, which is widely present yet non-native to the region, and examined how this alien species affects two factors influencing the success of restoration: wind disturbance and deer herbivory. We examined the following effects of L. kaempferi plantations on natural regeneration: (1) the windbreak function for protecting native tree growth and (2) the nursery function to promote the regeneration of native tree saplings and seedlings under high herbivory pressure. We assessed tree height and regeneration, using large-scale remotely sensed data and terrestrial inventory data in five major vegetation types. We found that L. kaempferi plantations can protect native species from predominant winds. Additionally, L. kaempferi canopy cover promoted abundance and species richness in understory saplings and seedlings compared to other vegetation types such as primary and secondary forests, even under excessive browsing pressure. No regenerating L. kaempferi individuals were observed during the field census, suggesting the species is likely not invasive in our study system. The positive relationship between alien tree species and the regeneration of native tree assemblages emphasizes that existing alien species have the potential to act as nurse plants. Our findings imply that the presence of alien species can contribute to natural forest restoration by improving the local environmental conditions for native species in the short-term. Given the multiple ecological and social needs in our changing world, careful consideration is required to evaluate the long-term consequences of alien species. Especially in ecosystems in which alien species have already established, using their positive functions rather than swiftly eradicating them from the landscape might be beneficial for long-term restoration goals. We conclude that managers need to be aware of the context-dependency of alien species to make restoration more effective.

Litter inputs drive patterns of soil nitrogen heterogeneity in a diverse tropical forest: Results from a litter manipulation experiment

Plant functional traits affect soil nutrient cycling in many ecosystems, but high levels of diversity make it challenging to identify their influence in tropical rainforests. Here, we used a litter manipulation experiment to demonstrate that differences in litter chemistry alone are sufficient to drive changes in soil nitrogen (N) cycling within a two-year period in a lowland tropical rainforest. Previously, we used airborne imaging spectroscopy to identify ten 0.25 ha plots on the Osa Peninsula of southwestern Costa Rica, each containing 10–20 emergent trees, with relatively high or low mean canopy N content (± 0.4 standard deviations of the landscape mean; n = 5 each). Plots with high canopy N content had higher soil inorganic N concentrations, faster net N cycling rates, and greater nitrous oxide (N2O) emissions. Because abiotic conditions were similar among the plot types, we hypothesized that litter inputs drove the formation of these high and low soil N patches. We tested this hypothesis with a reciprocal litter transplant experiment. After two years of monthly treatments, litter inputs from the high canopy N plots increased soil N availability in the low canopy N plots by 30% but had no measurable effects on net N cycling rates or N2O emissions. Surprisingly, litter inputs from the low canopy N plots increased soil N availability and net nitrification in the high canopy N plots. While somewhat counterintuitive from a canopy N perspective, these results may reflect a more nuanced effect of litter chemistry. Although low canopy N plot litter had lower N content than high canopy N plot litter, it leached relatively more and higher quality soluble carbon (C), which we speculate may have had a positive priming effect, releasing N from more recalcitrant compounds. Additionally, low canopy N plot litter supported higher rates of free-living N fixation, which could have directly increased soil N availability. Overall, our results show that tropical tree assemblages with differing foliar chemistry can directly influence soil properties through litter inputs, and that this effect may be mediated not only by litter N, but also relative C solubility and chemistry.

Tree recruitment failure in old‐growth forest patches across human‐modified rainforests

Abstract Land‐use change threatens biodiversity in tropical landscapes, but its impact on rainforest regeneration remains poorly known. In fact, the landscape‐scale patterns driving the diversity of regenerating plants within forest fragments have been rarely explored, and we are uncertain whether such drivers vary across regions with different land‐use change patterns. We assessed the effect of landscape composition (forest cover and matrix openness) and configuration (forest patch density) on species diversity of sapling assemblages (trees ≥30 cm height and &lt;1 cm diameter) in old‐growth forest fragments from three Mexican rainforest regions with different disturbance levels (n = 20 landscapes per region). We separately assessed old‐growth forest specialists (OGS) and forest generalist (FG) species to test the hypotheses that: (a) OGS species show recruitment limitation (‘loser’ species), and can therefore be negatively impacted by landscape changes, especially by forest loss and matrix openness in more deforested regions; and (b) FG species can regenerate and even proliferate in more disturbed landscapes (‘winner’ species). We recorded ~24,000 plants from 415 species. Landscape composition showed stronger effects than landscape configuration. The diversity of OGS species generally decreased in more deforested landscapes dominated by open matrices, and FG species followed the opposite response, especially in the regions with high‐to‐intermediate degree of disturbance. Overall, forest fragmentation (patch density) showed weak or no effects on species diversity, especially after controlling for forest cover effects (i.e. fragmentation per se). In contrast to the fragmentation threshold hypothesis, the effect of fragmentation was independent of the regional context. Moreover, FG species were affected by landscape attributes operating at larger scales than OGS species. Synthesis. Our findings support our hypotheses, and suggest that forest loss and matrix openness, not fragmentation per se, can cause the recruitment failure of tree assemblages in highly deforested rainforests. This can be related to source and dispersal limitation in more deforested landscapes with treeless matrices. Therefore, to promote the regenerative potential (resilience) of forest patches in human‐modified tropical landscapes, conservation programs should focus on preventing forest loss (even the smallest forest patches) and improving matrix quality with treed elements, particularly in highly deforested tropical regions.

Landscape forest loss changes sunfleck dynamics in forest fragments of southern Bahia, Brazil

AbstractLandscape-scale habitat loss can change the floristic composition of forest fragments, affecting the survival of specific groups of plants, as shade-tolerant and emergent trees. This increasing in tree mortality creates forest canopy gaps of different sizes that ultimately determine the solar radiation available in the forest understorey. We conducted a study aiming to assess how the loss of forest cover at landscape level (i.e. deforestation) affects the sunfleck dynamics, a proxy of light regime in forest understorey. We expected that fragments located in landscapes with less forest cover have a high number of larger canopy gaps and, consequently, long-lasting sunflecks. In each forest fragment, a 100 per 50 m plot was established, and in each plot, we took 10 hemispherical photographs. The images were analysed using the Gap Light Analyzer software. The sunflecks were divided into six temporal classes. We evidenced that landscape-scale deforestation increased the frequency of all sunfleck intervals &gt;8 min, particularly the long-lasting (&gt; 32 min) sunflecks. We propose that the increasing frequency of long-lasting sunflecks reduces suitability of microhabitat to some shade-tolerant species in local fragments, a potential proximal mechanism contributing to compositional shifts of tree assemblages observed in forest fragments within deforested landscapes.

Tree Diversity and Timber Resources Assessment in Secondary Forests of Quirino Forest Landscape Project, Philippines

This is a part of baseline data gathering for a short-term project in 12 barangays referred as Quirino Forest Landscape (QFL). The study assessed trees’ diversity, biophysical attributes, utilization values and ecological importance. Quadrat sampling was performed to gather abundance and biometric data of trees with diameter at breast height of 15cm and greater. Data analysis employed alpha diversity indices, distance and similarity measures, carbon-based allometric equations, stand-stock table and other tools. Secondary information and first-hand accounts were used to gather ecological and utilization values. Diversity was very high, highly heterogeneous, and very complex. Diffun was found to have the most contiguous tree assemblage; Cabarroguis and Aglipay share more species than with Maddela and Diffun. Analysis of photographed canopies revealed mean canopy closure is 77.41%. Close to half of individual trees fall under 40cm and 50cm dbh classes, implying QFL is secondary forest. Trees have aboveground stored Carbon of 642.87tons/ha or 1.26tons/tree. The area host five premium timbers, 10 Philippine Mahogany timbers, Rosewoods, 15 Furniture/Construction, and 95 underutilized species. Slightly more than a third (33.60%) of sampled canopy trees (43 species total) require conservation effort, White Lauan (Shorea contorta) is the most critical. To control further damage, measures to prevent further forest cover loss must be instituted to understand and sustain ecosystem functions. Keywords: Secondary Forest, biodiversity, importance value, carbon storage, cabarroguis, Quirino Forest Landscape

Functional Paleoecology and the Pollen-Plant Functional Trait Linkage

Paleoecological investigations using the pollen-plant functional trait linkage are increasing in value as new insights to past ecological function and dynamics are revealed. These retrospective approaches link pollen sequences to plant functional trait measurements to reveal long-term changes in ecosystem properties that are difficult to resolve using traditional paleoecological methods. Despite these methodological improvements and the newfound perspectives, there has yet to be thorough testing of whether transforming pollen to ecological function tracks functional trait distributions in geographic space. We assess this in North America by linking surface pollen samples to measurements of three functional traits that represent major axes of plant ecological strategy. Pollen-derived estimates of function were first used to investigate occupied trait space at different scales. These estimates were used to reconstruct the latitudinal functional diversity gradient of North America, and results were compared to the continent’s functional diversity gradient estimated from tree assemblages and gradients based on pollen richness and evenness. Results indicated that the patterns in pollen-based function sufficiently track ecological function in trait and geographic space and the macroecological biodiversity pattern was reconstructed, although there were minor differences between the slopes of the functional diversity and each of the pollen index gradients. Taken together, the outcomes of our investigation indicate reliability in extending the pollen-plant functional trait linkage into deeper time, at least for examining North American functional dynamics.

Disentangling multi‐species aggregate versus overlapping distributions

AbstractAim: Single‐species distributions are well known to present random, aggregate, or regular patterns. However, at the community level, multi‐species aggregate distribution patterns are not simply the lumped aggregate distribution of each species in the community. Actually, the superimposition of specimens of different species on a distribution map can present an interacting distributional pattern: different species may overlap with each other (or conversely, avoid each other). To this end, other than aggregation, it is necessary to further quantify distributionally overlapping patterns of different species at the community level.Methods and results: In this study, we combined the conspecific‐encounter index v and Moran's I index to disentangle community‐level distributional aggregation versus superimposition. Numerical simulations demonstrated that the two indices, calculated from biodiversity data collected using the sequential sampling of specimens along line transects, were effective and complementary in predicting multi‐species distribution patterns. The conspecific‐encounter index was sensitive to the change in the degree of distributional aggregation while being insensitive to the change in the distributionally overlapping pattern of different species at the community level. In contrast, Moran's I index can detect the change in the degree of distributional overlap while being insensitive to the change in the level of distributional aggregation at the community level. Moreover, through additional simulations, we showed that the conspecific‐encounter index was robust despite many specimens from dominant species being omitted in the sampling. Finally, an empirical test on the Barro Colorado Island (BCI) forest plot in Panama revealed that tree assemblages in that region presented both random and non‐overlapping distributions, the latter being reported herein for the first time.Conclusions: The performance of Moran's I index and the conspecific‐encounter index are complementary when disentangling multi‐species aggregate versus overlapping distributions at the community level.

Spatial variation and drivers of vegetation structure and composition in coastal freshwater wetlands of subtropical Australia

Coastal freshwater wetlands (CFWs) are among the most understudied wetlands globally and are highly vulnerable to projected climate changes. To address CFW knowledge gaps in south-east Queensland, Australia, we surveyed the floristic composition and structure of wooded CFWs and explored variation in vegetation patterns in relation to selected environmental drivers. Understorey and shrub assemblages were surveyed using a cover-class scale and stem counts for tree species abundance. Vegetation structure attributes (stem density, basal area) were calculated from survey data. Redundancy analysis was used to investigate drivers of vegetation structure and the species composition of each stratum. Vegetation structure patterns were associated with gradients of rainfall, soil moisture, salinity and pH. Understorey species composition was associated with wallum wetland species, native perennial grass and herb species, and vegetation patterns of the canopy. Common CFW species, namely Melaleuca quinquenervia and Eucalyptus tereticornis, dominated tree assemblage variation. Overall, CFW vegetation exhibited strong associations with gradients of salinity, rainfall, groundwater dependence and disturbance. Alterations to key drivers of vegetation pattern with future climate changes are likely to markedly influence the composition, structure and function of CFW vegetation communities. Action is therefore required to maintain CFW vegetation communities and ecological function in these diverse and unique wetland systems.

Phylogenetic regionalization of tree assemblages reveals novel patterns of evolutionary affinities in the Atlantic Forest

AbstractAimWe used a phylogenetic approach to group assemblages of woody plant into major vegetation units in the Atlantic Forest, thus for the first time incorporating information on species evolutionary relationships into a bioregionalization of this critical hotspot. A phylogenetic regionalization will provide a spatially explicit framework for answering many basic and applied questions in biogeography, ecology and conservation.LocationAtlantic Forest.TaxonAngiospermsMethodsOur data set comprises 614 genera and 116 families, spread over 1,755 assemblages. To place assemblages in a multivariate evolutionary composition space, we used a phylogenetically informed ordination analysis, and to determine what the main phylogenetic groups of assemblages were, we used K‐means clustering based on phylogenetic dissimilarity of assemblages. To quantify how well environmental variables distinguish the phylogenetic groups found, we implemented classification tree approaches. Then, to explore the evolutionary turnover between the phylogenetic groups, we calculated phylogenetic beta diversity. Finally, we determined the lineages that are most strongly associated with individual phylogenetic groups using an indicator analysis for lineages.ResultsOur analyses suggest that there are seven principal groups, in terms of evolutionary lineage composition, in the Atlantic Forest. The greatest turnover of phylogenetic lineage composition separates tropical evergreen rain forest and semideciduous assemblages from subtropical and highland assemblages. The mixed subtropical forest showed the lowest phylogenetic compositional similarity values with other groups. Tropical rain forest had the highest number of significant indicator lineages, and the highest values of the indicator statistic for lineages.Main conclusionsWe found that the most pronounced evolutionary division separates southern and highland tree assemblages from those occurring under more tropical climates and at lower elevations. Our phylogenetic analyses point to an environmentally driven compositional division, likely based on the regular occurrence of freezing versus non‐freezing temperatures. Precipitation and edaphic regimes that assemblages experience had less definitive effects on their evolutionary lineage composition.

Timber and non-timber forest products in the northernmost Neotropical rainforest: Ecological factors unravel their landscape distribution

The benefits provided by tropical rainforests are unevenly distributed throughout the landscape and are shaped by abiotic and biotic components that influence the spatial distribution and functional traits of the species involved. We tested whether environmental stratification of the rainforest in biophysical Landscape Units (LU), defined by topography and soil, is related to the spatial distribution of diversity, abundance and productivity (standing biomass) of tree assemblages that provide potential forest products (PFP). Considering that different PFP are associated with specific plant traits, we also tested whether a phylogenetic signal exists among the species that comprise specific use categories. Non-metric multidimensional scaling ordinations and permutational analysis of variance were based on the frequency, abundance and productivity of 129 species, the PFP of which were classified as fodder, food, fuelwood, medicinal, melliferous, ornamental, plywood and timber in 15 plots of 0.5 ha each. We constructed a phylogenetic tree of the studied species and analyzed the phylogenetic signal strength (D-statistic) among them. The spatial distribution of diversity and abundance of useful species changes among the LU. Specific PFP can be provided in contrasting habitat conditions, but generally not by the same species. The PFP categories that presented a phylogenetic signal were associated with wood characteristics (fuelwood and plywood) and the palatability of the leaves and reproductive structures (fodder). The Moraceae family was significantly related to fodder and plywood, whereas Meliaceae, Myrtaceae and Sapotaceae were mostly used for fuelwood. The medicinal species presented convergent traits distributed throughout the phylogeny. However, since our study included a broad variety of plant structures, it is possible that phylogenetic dispersion can change if we consider the specific uses within each category. Our findings show that the assemblages of PFP suppliers can be clustered through biophysical units based on soil and topography, and specific categories of PFP are often supplied by phylogenetically related species. This knowledge is fundamental in order to incorporate the high diversity of tree species and their potential uses into productive reforestation and agroforestry programs.

Are phylogenies resolved at the genus level appropriate for studies on phylogenetic structure of species assemblages?

Phylogenies are essential to studies investigating the effect of evolutionary history on assembly of species in ecological communities and geographical and ecological patterns of phylogenetic structure of species assemblages. Because phylogenies well resolved at the species level are lacking for many major groups of organisms such as vascular plants, researchers often generate a species-level phylogenies using a phylogeny well resolved at the genus level as a backbone and attaching species to their respective genera in the phylogeny as polytomies or by using a megaphylogeny well resolved at the genus level as a backbone and adding additional species to the megaphylogeny as polytomies of their respective genera. However, whether the result of a study using species-level phylogenies generated in these ways is robust, compared to that based on phylogenies fully resolved at the species level, has not been assessed. Here, we use 1093 angiosperm tree assemblages (each in a 110 × 110 km quadrat) in North America as a model system to address this question, by examining six commonly used metrics of phylogenetic structure (phylogenetic diversity and phylogenetic relatedness) and six climate variables commonly used in ecology. Our results showed that (1) the scores of phylogenetic metrics derived from species-level phylogenies resolved at the genus level with species being attached to their respective genera as polytomies are very strongly or perfectly correlated to those derived from a phylogeny fully resolved at the species level (the mean of correlation coefficients is 0.973), and (2) the relationships between the scores of phylogenetic metrics and climate variables are consistent between the two sets of analyses based on the two types of phylogeny. Our study suggests that using species-level phylogenies resolved at the genus level with species being attached to their genera as polytomies is appropriate in studies exploring patterns of phylogenetic structure of species in ecological communities across geographical and ecological gradients.