Transient processes were analyzed in the automatic control system of the vibroactive forces electrodynamic compensator. Active vibration isolation system was considered, where a pneumatic spring based on the rubber-cord shell and the vibroactive forces electrodynamic compensator with a hydraulic inertial motion transducer were combined in a single construct. The paper shows that to ensure high efficiency of the vibration isolation, the gain in the electrodynamic compensator control circuit should be sufficiently large, but this leads to an increase in the transient process and the oscillation period duration. The proportional-integral controller could be introduced to reduce the oscillation index in the control system. However, the inertial mass oscillation center is shifting in the electrodynamic compensator in this case, which could lead to losses in its performance. An approach to solving this problem is proposed using the mechanism of averaging the measured current in the control coil and subtracting it from the current value, which makes it possible to eliminate the inertial mass shift while maintaining the transient process short duration, when a proportional-integral controller is included in the control circuit. It is shown that reducing the transient process period due to inclusion of the proportional-integral controller in the control circuit significantly increases the vibration isolation efficiency in the vibroactive forces non-stationary mode, for example, in the start-stop mode.